Quantification of Hantaan virus with a SYBR green i-based one-step qRT-PCR assay

PLoS ONE

Volumn 8, Issue 11, 2013, Pages

  Jiang, Wei ^a   Yu, Hai Tao ^a   Zhao, Ke ^a   Zhang, Ye ^a   Du, Hong ^a   Wang, Ping Zhong ^a   Bai, Xue Fan ^a  

^a FOURTH MILITARY MEDICAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ARTICLE; CELL CULTURE; CLINICAL ARTICLE; CONTROLLED STUDY; GENE DOSAGE; HANTAVIRUS; HEMORRHAGIC FEVER WITH RENAL SYNDROME; HEPATITIS B VIRUS; HEPATITIS C VIRUS; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS; IN VITRO STUDY; LIMIT OF DETECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; QUANTITATIVE ANALYSIS; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA TRANSCRIPTION; SENSITIVITY AND SPECIFICITY; SEOUL VIRUS; VIRUS DETECTION; VIRUS GENOME; VIRUS LOAD; ANIMAL; CELL LINE; GENETICS; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; VIROLOGY;

ANIMALS; CELL LINE; HANTAAN VIRUS; HEMORRHAGIC FEVER WITH RENAL SYNDROME; HUMANS; REAL-TIME POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; VIRAL LOAD;

EID: 84896718810     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0081525     Document Type: Article

References (22)

1. Khaiboullina SF, Morzunov SP, St Jeor SC (2005) Hantaviruses: molecular biology, evolution and pathogenesis. Curr Mol Med 5: 773-790. doi:10.2174/156652405774962317. PubMed: 16375712. (Pubitemid 43009517)
2. Zhang YZ, Zou Y, Fu ZF, Plyusnin A (2010) Hantavirus infections in humans and animals, China. Emerg Infect Dis 16: 1195-1203. doi: 10.3201/eid1608. 090470. PubMed: 20678311.
3. Zhang YZ, Zhang FX, Wang JB, Zhao ZW, Li MH et al. (2009) Hantaviruses in rodents and humans, Inner Mongolia Autonomous Region, China. Emerg Infect Dis 15: 885-891. doi:10.3201/eid1506.081126. PubMed: 19523286.
4. Ma C, Yu P, Nawaz M, Zuo S, Jin T, et al. (2012) Hantaviruses in rodents and humans, Xi'an, PR China. J Gen Virol 93: 2227-2236.
5. Lee HW, Lee PW, Johnson KM (1978) Isolation of the etiologic agent of Korean Hemorrhagic fever. J Infect Dis 137: 298-308. doi:10.1093/infdis/137.3. 298. PubMed: 24670.
6. Plyusnin A (2002) Genetics of hantaviruses: implications to taxonomy. Arch Virol 147: 665-682. doi:10.1007/s007050200017. PubMed: 12038679.
7. Schmaljohn CS, Dalrymple JM (1983) Analysis of Hantaan virus RNA: evidence for a new genus of bunyaviridae. Virology 131: 482-491. doi: 10.1016/0042-6822(83)90514-7. PubMed: 6419460. (Pubitemid 14175449)
8. Zhang FL, Wu XA, Luo W, Bai WT, Liu Y et al. (2007) The expression and genetic immunization of chimeric fragment of Hantaan virus M and S segments. Biochem Biophys Res Commun 354: 858-863. doi: 10.1016/j.bbrc.2007.01.020. PubMed: 17266922. (Pubitemid 46216212)
9. Jonsson CB, Figueiredo LT, Vapalahti O (2010) A global perspective on hantavirus ecology, epidemiology, and disease. Clin Microbiol Rev 23: 412-441. doi:10.1128/CMR.00062-09. PubMed: 20375360.
10. Zou Y, Hu J, Wang ZX, Wang DM, Yu C et al. (2008) Genetic characterization of hantaviruses isolated from Guizhou, China: evidence for spillover and reassortment in nature. J Med Virol 80: 1033-1041. doi:10.1002/jmv.21149. PubMed: 18428127. (Pubitemid 351657016)
11. Chen HX, Qiu FX (1993) Epidemiologic surveillance on the hemorrhagic fever with renal syndrome in China. Chin Med J (Engl) 106: 857-863. PubMed: 7908258.
12. Wang H, Yoshimatsu K, Ebihara H, Ogino M, Araki K et al. (2000) Genetic diversity of hantaviruses isolated in china and characterization of novel hantaviruses isolated from Niviventer confucianus and Rattus rattus. Virology 278: 332-345. doi:10.1006/viro.2000.0630. PubMed: 11118357. (Pubitemid 32012769)
13. Pérez LJ, Díaz de Arce H, Tarradas J, Rosell R, Perera CL et al. (2011) Development and validation of a novel SYBR Green real-time RT-PCR assay for the detection of classical swine fever virus evaluated on different real-time PCR platforms. J Virol Methods 174: 53-59. doi: 10.1016/j.jviromet. 2011.03.022. PubMed: 21458490.
14. Amer HM, Almajhdi FN (2011) Development of a SYBR Green I based real-time RT-PCR assay for detection and quantification of bovine coronavirus. Mol Cell Probes 25: 101-107. doi:10.1016/j.mcp. 2011.03.001. PubMed: 21419844.
15. Dash PK, Boutonnier A, Prina E, Sharma S, Reiter P (2012) Development of a SYBR green I based RT-PCR assay for yellow fever virus: application in assessment of YFV infection in Aedes aegypti. Virol J 9: 27. doi:10.1186/1743-422X-9-27. PubMed: 22264275.
16. Yi J, Xu Z, Zhuang R, Wang J, Zhang Y et al. (2013) Hantaan virus RNA load in patients having hemorrhagic fever with renal syndrome: correlation with disease severity. J Infect Dis 207: 1457-1461. doi: 10.1093/infdis/jis475. PubMed: 22869912.
17. Garin D, Peyrefitte C, Crance JM, Le Faou A, Jouan A et al. (2001) Highly sensitive Taqman PCR detection of Puumala hantavirus. Microbes Infect 3: 739-745. doi:10.1016/S1286-4579(01)01424-1. PubMed: 11489422. (Pubitemid 32727383)
18. Aitichou M, Saleh SS, McElroy AK, Schmaljohn C, Ibrahim MS (2005) Identification of Dobrava, Hantaan, Seoul, and Puumala viruses by one-step real-time RT-PCR. J Virol Methods 124: 21-26. doi:10.1016/j.jviromet.2004.10. 004. PubMed: 15664046. (Pubitemid 40138776)
19. Totzke G, Sachinidis A, Vetter H, Ko Y (1996) Competitive reverse transcription/polymerase chain reaction for the quantification of p53 and mdm2 mRNA expression. Mol Cell Probes 10: 427-433. doi:10.1006/mcpr.1996.0059. PubMed: 9025080. (Pubitemid 27037591)
20. Fronhoffs S, Totzke G, Stier S, Wernert N, Rothe M et al. (2002) A method for the rapid construction of cRNA standard curves in quantitative real-time reverse transcription polymerase chain reaction. Mol Cell Probes 16: 99-110. doi:10.1006/mcpr.2002.0405. PubMed: 12030760. (Pubitemid 34712934)
21. Evander M, Eriksson I, Pettersson L, Juto P, Ahlm C et al. (2007) Puumala hantavirus viremia diagnosed by real-time reverse transcriptase PCR using samples from patients with hemorrhagic fever and renal syndrome. J Clin Microbiol 45: 2491-2497. doi:10.1128/JCM.01902-06. PubMed: 17537944. (Pubitemid 47295479)
22. Zhang N, Liu Z, Han Q, Qiu J, Chen J et al. (2011) Development of one-step SYBR Green real-time RT-PCR for quantifying bovine viral diarrhea virus type-1 and its comparison with conventional RT-PCR. Virol J 8: 374. doi:10.1186/1743-422X-8-374. PubMed: 21798067.