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Volumn 8, Issue 11, 2013, Pages

Identification of novel sRNAs in mycobacterial species

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RNA; SMALL RNA; UNCLASSIFIED DRUG;

EID: 84896711222     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0079411     Document Type: Article
Times cited : (30)

References (33)
  • 2
    • 84863924309 scopus 로고    scopus 로고
    • Bacterial small RNA regulators: Versatile roles and rapidly evolving variations
    • Gottesman S, Storz G (2011) Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol 3: a003798.
    • (2011) Cold Spring Harb Perspect Biol , vol.3
    • Gottesman, S.1    Storz, G.2
  • 4
    • 4344682527 scopus 로고    scopus 로고
    • The small RNA regulators of Escherichia coli: Roles and mechanisms
    • Gottesman S (2004) The small RNA regulators of Escherichia coli: roles and mechanisms. Annu Rev Microbiol 58: 303-328.
    • (2004) Annu Rev Microbiol , vol.58 , pp. 303-328
    • Gottesman, S.1
  • 5
    • 77958028354 scopus 로고    scopus 로고
    • Regulatory RNA in bacterial pathogens
    • Papenfort K, Vogel J (2010) Regulatory RNA in bacterial pathogens. Cell host & Microbe 8: 116-127.
    • (2010) Cell Host & Microbe , vol.8 , pp. 116-127
    • Papenfort, K.1    Vogel, J.2
  • 6
    • 80052035218 scopus 로고    scopus 로고
    • Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli
    • Shinhara A, Matsui M, Hiraoka K, Nomura W, Hirano R, et al. (2011) Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli. BMC Genomics 12: 428.
    • (2011) BMC Genomics , vol.12 , pp. 428
    • Shinhara, A.1    Matsui, M.2    Hiraoka, K.3    Nomura, W.4    Hirano, R.5
  • 7
    • 80052526246 scopus 로고    scopus 로고
    • Genome-wide detection of novel regulatory RNAs in E. Coli
    • Raghavan R, Groisman EA, Ochman H (2011) Genome-wide detection of novel regulatory RNAs in E. coli. Genome Res 21: 1487-1497.
    • (2011) Genome Res , vol.21 , pp. 1487-1497
    • Raghavan, R.1    Groisman, E.A.2    Ochman, H.3
  • 8
  • 10
    • 79952174199 scopus 로고    scopus 로고
    • An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803
    • Mitschke J, Georg J, Scholz I, Sharma CM, Dienst D, et al. (2011) An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proc Natl Acad Sci U S A 108: 2124-2129.
    • (2011) Proc Natl Acad Sci U S a , vol.108 , pp. 2124-2129
    • Mitschke, J.1    Georg, J.2    Scholz, I.3    Sharma, C.M.4    Dienst, D.5
  • 11
    • 81755177792 scopus 로고    scopus 로고
    • Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis
    • Arnvig KB, Comas I, Thomson NR, Houghton J, Boshoff HI, et al. (2011) Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis. PLoS Pathogens 7: e1002342.
    • (2011) PLoS Pathogens , vol.7
    • Arnvig, K.B.1    Comas, I.2    Thomson, N.R.3    Houghton, J.4    Boshoff, H.I.5
  • 12
    • 67651225588 scopus 로고    scopus 로고
    • Identification of small RNAs in Mycobacterium tuberculosis
    • Arnvig KB, Young DB (2009) Identification of small RNAs in Mycobacterium tuberculosis. Mol Microbiol 73: 397-408.
    • (2009) Mol Microbiol , vol.73 , pp. 397-408
    • Arnvig, K.B.1    Young, D.B.2
  • 13
    • 77955077136 scopus 로고    scopus 로고
    • Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis
    • DiChiara JM, Contreras-Martinez LM, Livny J, Smith D, McDonough K a, et al. (2010) Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis. Nucleic Acids Res 38: 4067-4078.
    • (2010) Nucleic Acids Res , vol.38 , pp. 4067-4078
    • DiChiara, J.M.1    Contreras-Martinez, L.M.2    Livny, J.3    Smith, D.4    McDonough, K.A.5
  • 14
    • 84871315407 scopus 로고    scopus 로고
    • Genome-wide discovery of small RNAs in Mycobacterium tuberculosis
    • Miotto P, Forti F, Ambrosi A, Pellin D, Veiga DF, et al. (2012) Genome-wide discovery of small RNAs in Mycobacterium tuberculosis. PLoS one 7: e51950.
    • (2012) PLoS One , vol.7
    • Miotto, P.1    Forti, F.2    Ambrosi, A.3    Pellin, D.4    Veiga, D.F.5
  • 15
    • 84859037548 scopus 로고    scopus 로고
    • A Genome-Wide Identification Analysis of Small Regulatory RNAs in Mycobacterium tuberculosis by RNA-Seq and Conservation Analysis
    • Pellin D, Miotto P, Ambrosi A, Cirillo DM, Di Serio C (2012) A Genome-Wide Identification Analysis of Small Regulatory RNAs in Mycobacterium tuberculosis by RNA-Seq and Conservation Analysis. PLoS ONE 7: e32723.
    • (2012) PLoS ONE , vol.7
    • Pellin, D.1    Miotto, P.2    Ambrosi, A.3    Cirillo, D.M.4    Di Serio, C.5
  • 16
    • 84860349834 scopus 로고    scopus 로고
    • A screen for non-coding RNA in Mycobacterium tuberculosis reveals a cAMP-responsive RNA that is expressed during infection
    • Pelly S, Bishai WR, Lamichhane G (2012) A screen for non-coding RNA in Mycobacterium tuberculosis reveals a cAMP-responsive RNA that is expressed during infection. Gene 500: 85-92.
    • (2012) Gene , vol.500 , pp. 85-92
    • Pelly, S.1    Bishai, W.R.2    Lamichhane, G.3
  • 17
    • 52449093583 scopus 로고    scopus 로고
    • High-throughput, kingdomwide prediction and annotation of bacterial non-coding RNAs
    • Livny J, Teonadi H, Livny M, Waldor MK (2008) High-throughput, kingdomwide prediction and annotation of bacterial non-coding RNAs. PLoS ONE 3: e3197.
    • (2008) PLoS ONE , vol.3
    • Livny, J.1    Teonadi, H.2    Livny, M.3    Waldor, M.K.4
  • 18
    • 84874980389 scopus 로고    scopus 로고
    • Identification and characterization of small RNAs in Yersinia pestis
    • Beauregard A, Smith E, Petrone B, Singh N, Karch C, et al. (2013) Identification and characterization of small RNAs in Yersinia pestis. RNA Biol 10: 397-405.
    • (2013) RNA Biol , vol.10 , pp. 397-405
    • Beauregard, A.1    Smith, E.2    Petrone, B.3    Singh, N.4    Karch, C.5
  • 19
    • 84874538564 scopus 로고    scopus 로고
    • Definition and annotation of (myco)bacterial non-coding RNA
    • Edinburgh, Scotland
    • Lamichhane G, Arnvig KB, McDonough KA (2013) Definition and annotation of (myco)bacterial non-coding RNA. Tuberculosis (Edinburgh, Scotland) 93: 26-29.
    • (2013) Tuberculosis , vol.93 , pp. 26-29
    • Lamichhane, G.1    Arnvig, K.B.2    McDonough, K.A.3
  • 20
    • 84864128142 scopus 로고    scopus 로고
    • Bioinformatic Discovery of Bacterial Regulatory RNAs Using SIPHT
    • Keiler KC, editor. Totowa, NJ: Humana Press
    • Livny J (2012) Bioinformatic Discovery of Bacterial Regulatory RNAs Using SIPHT. In: Keiler KC, editor. Bacterial Regulatory RNA: Methods and Protocols. Totowa, NJ: Humana Press, Vol. 905. 3-14.
    • (2012) Bacterial Regulatory RNA: Methods and Protocols , vol.905 , pp. 3-14
    • Livny, J.1
  • 22
    • 84878808640 scopus 로고    scopus 로고
    • Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs
    • Khoo JS, Chai SF, Mohamed R, Nathan S, Firdaus-Raih M (2012) Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs. BMC Genomics 13 Suppl 7: S13.
    • (2012) BMC Genomics , vol.13 , Issue.SUPPL. 7
    • Khoo, J.S.1    Chai, S.F.2    Mohamed, R.3    Nathan, S.4    Firdaus-Raih, M.5
  • 23
    • 84862331245 scopus 로고    scopus 로고
    • Identification and expression of small non-coding RNA, L10-Leader, in different growth phases of Streptococcus mutans
    • Xia L, Xia W, Li S, Li W, Liu J, et al. (2012) Identification and expression of small non-coding RNA, L10-Leader, in different growth phases of Streptococcus mutans. Nucleic Acid Ther 22: 177-186.
    • (2012) Nucleic Acid Ther , vol.22 , pp. 177-186
    • Xia, L.1    Xia, W.2    Li, S.3    Li, W.4    Liu, J.5
  • 24
    • 84860392511 scopus 로고    scopus 로고
    • Assessing computational tools for the discovery of small RNA genes in bacteria
    • Lu X, Goodrich-blair H, Tjaden B (2011) Assessing computational tools for the discovery of small RNA genes in bacteria. RNA 17: 1635-1647.
    • (2011) RNA , vol.17 , pp. 1635-1647
    • Lu, X.1    Goodrich-blair, H.2    Tjaden, B.3
  • 25
    • 84874886134 scopus 로고    scopus 로고
    • ChIP-Seq and the complexity of bacterial transcriptional regulation
    • Galagan J, Lyubetskaya A, Gomes A (2013) ChIP-Seq and the complexity of bacterial transcriptional regulation. Curr Top Microbiol Immunol 363: 43-68.
    • (2013) Curr Top Microbiol Immunol , vol.363 , pp. 43-68
    • Galagan, J.1    Lyubetskaya, A.2    Gomes, A.3
  • 26
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Oxford, England
    • Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (Oxford, England) 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 27
    • 84871416651 scopus 로고    scopus 로고
    • Identification of small RNAs in Mycobacterium smegmatis using heterologous Hfq
    • Li SK, Ng PK, Qin H, Lau JK, Lau JP, et al. (2012) Identification of small RNAs in Mycobacterium smegmatis using heterologous Hfq. RNA 19: 74-84.
    • (2012) RNA , vol.19 , pp. 74-84
    • Li, S.K.1    Ng, P.K.2    Qin, H.3    Lau, J.K.4    Lau, J.P.5
  • 28
    • 64949193690 scopus 로고    scopus 로고
    • High-throughput verification of transcriptional starting sites by Deep-RACE
    • Olivarius S, Plessy C, Carninci P (2009) High-throughput verification of transcriptional starting sites by Deep-RACE. Biotechniques 46: 130-132.
    • (2009) Biotechniques , vol.46 , pp. 130-132
    • Olivarius, S.1    Plessy, C.2    Carninci, P.3
  • 29
    • 79958047291 scopus 로고    scopus 로고
    • cis-antisense RNA, another level of gene regulation in bacteria. Microbiology and molecular biology reviews?
    • Georg J, Hess WR (2011) cis-antisense RNA, another level of gene regulation in bacteria. Microbiology and molecular biology reviews?: MMBR 75: 286-300.
    • (2011) MMBR , vol.75 , pp. 286-300
    • Georg, J.1    Hess, W.R.2
  • 30
    • 14244257879 scopus 로고    scopus 로고
    • Detection of 59- and 39-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli
    • DOI 10.1093/nar/gki256
    • Kawano M, Reynolds AA, Miranda-Rios J, Storz G (2005) Detection of 59- and 39-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli. Nucleic Acids Res. 33: 1040-1050. (Pubitemid 41430524)
    • (2005) Nucleic Acids Research , vol.33 , Issue.3 , pp. 1040-1050
    • Kawano, M.1    Reynolds, A.A.2    Miranda-Rios, J.3    Storz, G.4
  • 31
    • 70350771280 scopus 로고    scopus 로고
    • A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes
    • Loh E, Dussurget O, Gripenland J, Vaitkevicius K, Tiensuu T, et al (2009) A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes. Cell 139: 770-779.
    • (2009) Cell , vol.139 , pp. 770-779
    • Loh, E.1    Dussurget, O.2    Gripenland, J.3    Vaitkevicius, K.4    Tiensuu, T.5
  • 32
    • 84867577054 scopus 로고    scopus 로고
    • An atlas of Hfq-bound transcripts reveals 39 UTRs as a genomic reservoir of regulatory small RNAs
    • Chao Y, Papenfort K, Reinhardt R, Sharma CM, Vogel J (2012) An atlas of Hfq-bound transcripts reveals 39 UTRs as a genomic reservoir of regulatory small RNAs. The EMBO journal 31: 4005-4019.
    • (2012) The EMBO Journal , vol.31 , pp. 4005-4019
    • Chao, Y.1    Papenfort, K.2    Reinhardt, R.3    Sharma, C.M.4    Vogel, J.5


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