-
1
-
-
0038497542
-
Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid
-
Watson JD, Crick FH (1953) Molecular structure of nucleic acids; A structure for deoxyribose nucleic acid. Nature 171(4356):737-738.
-
(1953)
Nature
, vol.171
, Issue.4356
, pp. 737-738
-
-
Watson, J.D.1
Crick, F.H.2
-
2
-
-
76549238253
-
The pleated sheet, a new layer configuration of polypeptide chains
-
Pauling L, Corey RB (1951) The pleated sheet, a new layer configuration of polypeptide chains. Proc Natl Acad Sci USA 37(5):251-256.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, Issue.5
, pp. 251-256
-
-
Pauling, L.1
Corey, R.B.2
-
3
-
-
76549252207
-
The structure of proteins; two hydrogenbonded helical configurations of the polypeptide chain
-
Pauling L, Corey RB, Branson HR (1951) The structure of proteins; Two hydrogenbonded helical configurations of the polypeptide chain. Proc Natl Acad Sci USA 37(4): 205-211.
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, Issue.4
, pp. 205-211
-
-
Pauling, L.1
Corey, R.B.2
Branson, H.R.3
-
5
-
-
0021828928
-
Hydrogen bonding and biological specificity analysed by protein engineering
-
DOI 10.1038/314235a0
-
Fersht AR, et al. (1985) Hydrogen bonding and biological specificity analyzed by protein engineering. Nature 314(6008):235-238. (Pubitemid 15076511)
-
(1985)
Nature
, vol.314
, Issue.6008
, pp. 235-238
-
-
Fersht, A.R.1
Shi, J.P.2
Knill-Jones, J.3
-
6
-
-
0027475726
-
Toward an estimation of binding constants in aqueous solution: Studies of associations of vancomycin group antibiotics
-
DOI 10.1073/pnas.90.4.1172
-
Williams DH, Searle MS, Mackay JP, Gerhard U, Maplestone RA (1993) Toward an estimation of binding constants in aqueous solution: Studies of associations of vancomycin group antibiotics. Proc Natl Acad Sci USA 90(4):1172-1178. (Pubitemid 23058134)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.4
, pp. 1172-1178
-
-
Williams, D.H.1
Searle, M.S.2
Mackay, J.P.3
Gerhard, U.4
Maplestone, R.A.5
-
7
-
-
0027485091
-
Solvent water and protein behavior: View through a retroscope
-
Klotz IM (1993) Solvent water and protein behavior: View through a retroscope. Protein Sci 2(11):1992-1999. (Pubitemid 23328555)
-
(1993)
Protein Science
, vol.2
, Issue.11
, pp. 1992-1999
-
-
Klotz, I.M.1
-
8
-
-
0000648204
-
On the structure of native, denatured, and coagulated proteins
-
Mirsky AE, Pauling L (1936) On the structure of native, denatured, and coagulated proteins. Proc Natl Acad Sci USA 22(7):439-447.
-
(1936)
Proc Natl Acad Sci USA
, vol.22
, Issue.7
, pp. 439-447
-
-
Mirsky, A.E.1
Pauling, L.2
-
9
-
-
0030736114
-
Free energy of amide hydrogen bond formation in vacuum, in water, and in liquid alkane solution
-
Ben-Tal N, et al. (1997) Free energy of amide hydrogen bond formation in vacuum, in water, and in liquid alkane solution. J Phys Chem B 101(3):450-457. (Pubitemid 127617329)
-
(1997)
Journal of Physical Chemistry B
, vol.101
, Issue.3
, pp. 450-457
-
-
Ben-Tal, N.1
Sitkoff, D.2
Topol, I.A.3
Yang, A.-S.4
Burt, S.K.5
Honig, B.6
-
10
-
-
0034718590
-
Energetics of the interaction between water and the helical peptide group and its role in determining helix propensities
-
Avbelj F, Luo P, Baldwin RL (2000) Energetics of the interaction between water and the helical peptide group and its role in determining helix propensities. Proc Natl Acad Sci USA 97(20):10786-10791.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.20
, pp. 10786-10791
-
-
Avbelj, F.1
Luo, P.2
Baldwin, R.L.3
-
11
-
-
84986435971
-
The nature of the n-ho=c hydrogen bond: An intermolecular perturbation theory study of the formamide/formaldehyde complex
-
Mitchell JBO, Price SL (1990) The nature of the n-ho=c hydrogen bond: An intermolecular perturbation theory study of the formamide/formaldehyde complex. J Comput Chem 11(10):1217-1233.
-
(1990)
J Comput Chem
, vol.11
, Issue.10
, pp. 1217-1233
-
-
Mitchell, J.B.O.1
Price, S.L.2
-
12
-
-
0242363173
-
Energetics of hydrogen bonds in peptides
-
DOI 10.1073/pnas.2133366100
-
Sheu SY, Yang DY, Selzle HL, Schlag EW (2003) Energetics of hydrogen bonds in peptides. Proc Natl Acad Sci USA 100(22):12683-12687. (Pubitemid 37339959)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.22
, pp. 12683-12687
-
-
Sheu, S.-Y.1
Yang, D.-Y.2
Selzle, H.L.3
Schlag, E.W.4
-
13
-
-
0029669955
-
Free-energy determinants of alpha-helix insertion into lipid bilayers
-
Ben-Tal N, Ben-Shaul A, Nicholls A, Honig B (1996) Free-energy determinants of alpha-helix insertion into lipid bilayers. Biophys J 70(4):1803-1812.
-
(1996)
Biophys J
, vol.70
, Issue.4
, pp. 1803-1812
-
-
Ben-Tal, N.1
Ben-Shaul, A.2
Nicholls, A.3
Honig, B.4
-
14
-
-
0024975174
-
Letters to the editor. Thermodynamics of amide hydrogen bond formation in polar and apolar solvents
-
DOI 10.1016/0022-2836(89)90609-8
-
Sneddon SF, Tobias DJ, Brooks CL, 3rd (1989) Thermodynamics of amide hydrogen bond formation in polar and apolar solvents. J Mol Biol 209(4):817-820. (Pubitemid 20046134)
-
(1989)
Journal of Molecular Biology
, vol.209
, Issue.4
, pp. 817-820
-
-
Sneddon, S.F.1
Tobias, D.J.2
Brooks III, C.L.3
-
15
-
-
73649159246
-
Side-chain interactions in myoglobin
-
Kendrew JC (1962) Side-chain interactions in myoglobin. Brookhaven Symp Biol 15: 216-228.
-
(1962)
Brookhaven Symp Biol
, vol.15
, pp. 216-228
-
-
Kendrew, J.C.1
-
16
-
-
0021192240
-
Hydrogen bonding in globular proteins
-
Baker EN, Hubbard RE (1984) Hydrogen bonding in globular proteins. Prog Biophys Mol Biol 44(2):97-179.
-
(1984)
Prog Biophys Mol Biol
, vol.44
, Issue.2
, pp. 97-179
-
-
Baker, E.N.1
Hubbard, R.E.2
-
17
-
-
0021755525
-
Intrahelical hydrogen bonding of serine, threonine and cysteine residues within alpha-helices and its relevance to membrane-bound proteins
-
Gray TM, Matthews BW (1984) Intrahelical hydrogen bonding of serine, threonine and cysteine residues within alpha-helices and its relevance to membrane-bound proteins. J Mol Biol 175(1):75-81.
-
(1984)
J Mol Biol
, vol.175
, Issue.1
, pp. 75-81
-
-
Gray, T.M.1
Matthews, B.W.2
-
18
-
-
0033747337
-
Serine and threonine residues bend alpha-helices in the chi(1) = g(-) conformation
-
Ballesteros JA, Deupi X, Olivella M, Haaksma EE, Pardo L (2000) Serine and threonine residues bend alpha-helices in the chi(1) = g(-) conformation. Biophys J 79(5): 2754-2760.
-
(2000)
Biophys J
, vol.79
, Issue.5
, pp. 2754-2760
-
-
Ballesteros, J.A.1
Deupi, X.2
Olivella, M.3
Haaksma, E.E.4
Pardo, L.5
-
19
-
-
79958079887
-
A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions
-
Shapovalov MV, Dunbrack RL, Jr. (2011) A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions. Structure 19(6):844-858.
-
(2011)
Structure
, vol.19
, Issue.6
, pp. 844-858
-
-
Shapovalov, M.V.1
Dunbrack Jr., R.L.2
-
20
-
-
0019464222
-
The spontaneous insertion of proteins into and across membranes: The helical hairpin hypothesis
-
Engelman DM, Steitz TA (1981) The spontaneous insertion of proteins into and across membranes: The helical hairpin hypothesis. Cell 23(2):411-422. (Pubitemid 11096334)
-
(1981)
Cell
, vol.23
, Issue.2
, pp. 411-422
-
-
Engelman, D.M.1
Steitz, T.A.2
-
21
-
-
0021893484
-
2 protein is an integral membrane protein expressed on the infected-cell surface
-
Lamb RA, Zebedee SL, Richardson CD (1985) Influenza virus M2 protein is an integral membrane protein expressed on the infected-cell surface. Cell 40(3):627-633. (Pubitemid 15076578)
-
(1985)
Cell
, vol.40
, Issue.3
, pp. 627-633
-
-
Lamb, R.A.1
Zebedee, S.L.2
Richardson, C.D.3
-
22
-
-
0026612385
-
Influenza virus m2 protein has ion channel activity
-
Pinto LH, Holsinger LJ, Lamb RA (1992) Influenza virus M2 protein has ion channel activity. Cell 69(3):517-528.
-
(1992)
Cell
, vol.69
, Issue.3
, pp. 517-528
-
-
Pinto, L.H.1
Holsinger, L.J.2
Lamb, R.A.3
-
23
-
-
38749106195
-
Structure and mechanism of the M2 proton channel of influenza A virus
-
DOI 10.1038/nature06531, PII NATURE06531
-
Schnell JR, Chou JJ (2008) Structure and mechanism of the M2 proton channel of influenza A virus. Nature 451(7178):591-595. (Pubitemid 351186272)
-
(2008)
Nature
, vol.451
, Issue.7178
, pp. 591-595
-
-
Schnell, J.R.1
Chou, J.J.2
-
24
-
-
38749151911
-
Structural basis for the function and inhibition of an influenza virus proton channel
-
DOI 10.1038/nature06528, PII NATURE06528
-
Stouffer AL, et al. (2008) Structural basis for the function and inhibition of an influenza virus proton channel. Nature 451(7178):596-599. (Pubitemid 351186271)
-
(2008)
Nature
, vol.451
, Issue.7178
, pp. 596-599
-
-
Stouffer, A.L.1
Acharya, R.2
Salom, D.3
Levine, A.S.4
Di Costanzo, L.5
Soto, C.S.6
Tereshko, V.7
Nanda, V.8
Stayrook, S.9
DeGrado, W.F.10
-
25
-
-
76249125649
-
Structure of the amantadine binding site of influenza m2 proton channels in lipid bilayers
-
Cady SD, et al. (2010) Structure of the amantadine binding site of influenza M2 proton channels in lipid bilayers. Nature 463(7281):689-692.
-
(2010)
Nature
, vol.463
, Issue.7281
, pp. 689-692
-
-
Cady, S.D.1
-
26
-
-
77956637693
-
Influenza virus m2 protein mediates escrt-independent membrane scission
-
Rossman JS, Jing X, Leser GP, Lamb RA (2010) Influenza virus M2 protein mediates ESCRT-independent membrane scission. Cell 142(6):902-913.
-
(2010)
Cell
, vol.142
, Issue.6
, pp. 902-913
-
-
Rossman, J.S.1
Jing, X.2
Leser, G.P.3
Lamb, R.A.4
-
27
-
-
77958162674
-
Mechanisms of proton conduction and gating in influenza m2 proton channels from solid-state nmr
-
Hu F, Luo W, Hong M (2010) Mechanisms of proton conduction and gating in influenza M2 proton channels from solid-state NMR. Science 330(6003):505-508.
-
(2010)
Science
, vol.330
, Issue.6003
, pp. 505-508
-
-
Hu, F.1
Luo, W.2
Hong, M.3
-
28
-
-
77958156306
-
Insight into the mechanism of the influenza a proton channel from a structure in a lipid bilayer
-
Sharma M, et al. (2010) Insight into the mechanism of the influenza A proton channel from a structure in a lipid bilayer. Science 330(6003):509-512.
-
(2010)
Science
, vol.330
, Issue.6003
, pp. 509-512
-
-
Sharma, M.1
-
29
-
-
4344645639
-
A highly unusual palindromic transmembrane helical hairpin formed by SARS coronavirus E protein
-
DOI 10.1016/j.jmb.2004.06.044, PII S0022283604006953
-
Arbely E, et al. (2004) A highly unusual palindromic transmembrane helical hairpin formed by SARS coronavirus E protein. J Mol Biol 341(3):769-779. (Pubitemid 39118410)
-
(2004)
Journal of Molecular Biology
, vol.341
, Issue.3
, pp. 769-779
-
-
Arbely, E.1
Khattari, Z.2
Brotons, G.3
Akkawi, M.4
Salditt, T.5
Arkin, I.T.6
-
30
-
-
33746776201
-
Model of a putative pore: The pentameric α-helical bundle of SARS coronavirus E protein in lipid bilayers
-
DOI 10.1529/biophysj.105.080119
-
Torres J, et al. (2006) Model of a putative pore: The pentameric alpha-helical bundle of SARS coronavirus E protein in lipid bilayers. Biophys J 91(3):938-947. (Pubitemid 44161926)
-
(2006)
Biophysical Journal
, vol.91
, Issue.3
, pp. 938-947
-
-
Torres, J.1
Parthasarathy, K.2
Lin, X.3
Saravanan, R.4
Kukol, A.5
Ding, X.L.6
-
31
-
-
77953767572
-
Bifurcated hydrogen bonds stabilize fibrils of poly(l-glutamic) acid
-
Fulara A, Dzwolak W (2010) Bifurcated hydrogen bonds stabilize fibrils of poly(L-glutamic) acid. J Phys ChemB 114(24):8278-8283.
-
(2010)
J Phys ChemB
, vol.114
, Issue.24
, pp. 8278-8283
-
-
Fulara, A.1
Dzwolak, W.2
-
32
-
-
0034697895
-
Use of a new label, (13)=(18)o in the determination of a structural model of phospholamban in a lipid bilayer spatial restraints resolve the ambiguity arising from interpretations of mutagenesis data
-
Torres J, Adams PD, Arkin IT (2000) Use of a new label, (13)=(18)O, in the determination of a structural model of phospholamban in a lipid bilayer. Spatial restraints resolve the ambiguity arising from interpretations of mutagenesis data. J Mol Biol 300(4):677-685.
-
(2000)
J Mol Biol
, vol.300
, Issue.4
, pp. 677-685
-
-
Torres, J.1
Adams, P.D.2
Arkin, I.T.3
-
33
-
-
0034752541
-
18O group as a novel infrared probe
-
DOI 10.1002/1097-0282(200111)59:6<396::AID-BIP1044>3.0.CO;2-Y
-
Torres J, Kukol A, Goodman JM, Arkin IT (2001) Site-specific examination of secondary structure and orientation determination in membrane proteins: The peptidic (13)C= (18)O group as a novel infrared probe. Biopolymers 59(6):396-401. (Pubitemid 33029231)
-
(2001)
Biopolymers
, vol.59
, Issue.6
, pp. 396-401
-
-
Torres, J.1
Kukol, A.2
Goodman, J.M.3
Arkin, I.T.4
-
34
-
-
84859612417
-
Environment polarity in proteins mapped noninvasively by ftir spectroscopy
-
Manor J, Feldblum ES, Zanni MT, Arkin IT (2012) Environment polarity in proteins mapped noninvasively by FTIR spectroscopy. J Phys Chem Lett 3(7):939-944.
-
(2012)
J Phys Chem Lett
, vol.3
, Issue.7
, pp. 939-944
-
-
Manor, J.1
Feldblum, E.S.2
Zanni, M.T.3
Arkin, I.T.4
-
35
-
-
59649114004
-
Gating mechanism of the influenza a m2 channel revealed by 1d and 2d ir spectroscopies
-
Manor J, et al. (2009) Gating mechanism of the influenza A M2 channel revealed by 1D and 2D IR spectroscopies. Structure 17(2):247-254.
-
(2009)
Structure
, vol.17
, Issue.2
, pp. 247-254
-
-
Manor, J.1
-
36
-
-
0027160197
-
Backbone-dependent rotamer library for proteins. Application to side-chain prediction
-
DOI 10.1006/jmbi.1993.1170
-
Dunbrack RL, Jr., Karplus M (1993) Backbone-dependent rotamer library for proteins. Application to side-chain prediction. J Mol Biol 230(2):543-574. (Pubitemid 23161363)
-
(1993)
Journal of Molecular Biology
, vol.230
, Issue.2
, pp. 543-574
-
-
Dunbrack Jr., R.L.1
Karplus, M.2
-
37
-
-
75549084424
-
Pdbselect 1992-2009 and pdbfilter-select
-
Database issue
-
Griep S, Hobohm U (2010) PDBselect 1992-2009 and PDBfilter-select. Nucleic Acids Res 38(Database issue):D318-D319.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Griep, S.1
Hobohm, U.2
-
38
-
-
16344378642
-
Analysis of side-chain rotamers in transmembrane proteins
-
DOI 10.1529/biophysj.104.044024
-
Chamberlain AK, Bowie JU (2004) Analysis of side-chain rotamers in transmembrane proteins. Biophys J 87(5):3460-3469. (Pubitemid 40468599)
-
(2004)
Biophysical Journal
, vol.87
, Issue.5
, pp. 3460-3469
-
-
Chamberlain, A.K.1
Bowie, J.U.2
-
39
-
-
33746563448
-
Advances in methods and algorithms in a modern quantum chemistry program package
-
Shao Y, et al. (2006) Advances in methods and algorithms in a modern quantum chemistry program package. Phys Chem Chem Phys 8(27):3172-3191.
-
(2006)
Phys Chem Chem Phys
, vol.8
, Issue.27
, pp. 3172-3191
-
-
Shao, Y.1
-
40
-
-
33746614482
-
Gaussian-basis sets for use in correlated molecular calculations. 1. The atoms boron through neon and hydrogen
-
Dunning TH (1989) Gaussian-basis sets for use in correlated molecular calculations. 1. The atoms boron through neon and hydrogen. J Chem Phys 90:1007-1023.
-
(1989)
J Chem Phys
, vol.90
, pp. 1007-1023
-
-
Dunning, T.H.1
-
41
-
-
4143095330
-
Electron-Affinities of the 1st-row atoms revisited -Systematic basis-sets and wave-functions
-
Kendall RA, Dunning TH, Harrison RJ (1992) Electron-Affinities of the 1st-row atoms revisited -Systematic basis-sets and wave-functions. J Chem Phys 96(9):6796-6806.
-
(1992)
J Chem Phys
, vol.96
, Issue.9
, pp. 6796-6806
-
-
Kendall, R.A.1
Dunning, T.H.2
Harrison, R.J.3
-
42
-
-
0345491105
-
Development of the colle-salvetti correlation-energy formula into a functional of the electron density
-
Lee CT, Yang W, Parr RG (1988) Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys Rev B Condens Matter 37(2): 785-789.
-
(1988)
Phys Rev B Condens Matter
, vol.37
, Issue.2
, pp. 785-789
-
-
Lee, C.T.1
Yang, W.2
Parr, R.G.3
-
43
-
-
4243553426
-
Density-functional exchange-energy approximation with correct asymptotic behavior
-
Becke AD (1988) Density-functional exchange-energy approximation with correct asymptotic behavior. Phys Rev A 38(6):3098-3100.
-
(1988)
Phys Rev A
, vol.38
, Issue.6
, pp. 3098-3100
-
-
Becke, A.D.1
-
46
-
-
18744367282
-
Molecular dynamics integration and molecular vibrational theory. Iii. The infrared spectrum of water
-
Praprotnik M, Janezic D (2005) Molecular dynamics integration and molecular vibrational theory. III. The infrared spectrum of water. J Chem Phys 122(17):174103.
-
(2005)
J Chem Phys
, vol.122
, Issue.17
, pp. 174103
-
-
Praprotnik, M.1
Janezic, D.2
-
47
-
-
9144247871
-
A molecular-dynamics study of the far infrared-spectrum of liquid water
-
Guillot B (1991) A molecular-dynamics study of the far infrared-spectrum of liquid water. J Chem Phys 95:1543-1551.
-
(1991)
J Chem Phys
, vol.95
, pp. 1543-1551
-
-
Guillot, B.1
-
48
-
-
13444280419
-
PDB-TM: Selection and membrane localization of transmembrane proteins in the protein data bank
-
DOI 10.1093/nar/gki002
-
Tusnády GE, Dosztányi Z, Simon I (2005) PDB-TM: Selection and membrane localization of transmembrane proteins in the protein data bank. Nucleic Acids Res 33 (Database issue):D275-D278. (Pubitemid 40207877)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS.
-
-
Tusnady, G.E.1
Dosztanyi, Z.2
Simon, I.3
|