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Volumn 201, Issue , 2014, Pages 79-85

Validation and comparison of different end point and real time RT-PCR assays for detection and genotyping of porcine reproductive and respiratory syndrome virus

Author keywords

Genotyping; PRRSV; QRT PCR; RT PCR

Indexed keywords

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTERIVIRUS; ARTICLE; ASSAY; CELL CULTURE; COMPARATIVE STUDY; CONTROLLED STUDY; DIAGNOSTIC TEST ACCURACY STUDY; GENOTYPE; INTERNAL CONTROL SYSTEM; MEASUREMENT REPEATABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SERUM; SYBR GREEN ONE STEP REAL TIME POLYMERASE CHAIN REACTION; TAQMAN BASED ONE STEP REAL TIME POLYMERASE CHAIN REACTION; VALIDATION PROCESS; VIREMIA; VIRUS DETECTION; ANIMAL; CLASSIFICATION; EVALUATION STUDY; GENETICS; GENOTYPING TECHNIQUE; ISOLATION AND PURIFICATION; MOLECULAR DIAGNOSIS; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME; PROCEDURES; REPRODUCIBILITY; SWINE;

EID: 84896517107     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2014.02.015     Document Type: Article
Times cited : (14)

References (34)
  • 1
    • 64949099800 scopus 로고    scopus 로고
    • Development of a one-step real-time quantitative PCR assay based on primer-probe energy transfer for the detection of porcine reproductive and respiratory syndrome virus
    • Balka G., Hornyák A., Bálint A., Benyeda Z., Rusvai M. Development of a one-step real-time quantitative PCR assay based on primer-probe energy transfer for the detection of porcine reproductive and respiratory syndrome virus. J. Virol. Methods 2009, 158:41-45.
    • (2009) J. Virol. Methods , vol.158 , pp. 41-45
    • Balka, G.1    Hornyák, A.2    Bálint, A.3    Benyeda, Z.4    Rusvai, M.5
  • 2
    • 0036637940 scopus 로고    scopus 로고
    • Assessing the duration of persistence and shedding of porcine reproductive and respiratory syndrome virus in a large population of breeding-age gilts
    • Batista L., Dee S.A., Rossow K.D., Dee J., Pijoan C. Assessing the duration of persistence and shedding of porcine reproductive and respiratory syndrome virus in a large population of breeding-age gilts. Can. J. Vet. Res. 2002, 66:196-200.
    • (2002) Can. J. Vet. Res. , vol.66 , pp. 196-200
    • Batista, L.1    Dee, S.A.2    Rossow, K.D.3    Dee, J.4    Pijoan, C.5
  • 3
    • 34447291386 scopus 로고    scopus 로고
    • Molecular diagnosis of viral diseases, present trends and future aspects. A view from the OIE collaborating centre for the application of polymerase chain reaction methods for diagnosis of viral diseases in veterinary medicine
    • Belák S. Molecular diagnosis of viral diseases, present trends and future aspects. A view from the OIE collaborating centre for the application of polymerase chain reaction methods for diagnosis of viral diseases in veterinary medicine. Vaccine 2007, 25:5444-5452.
    • (2007) Vaccine , vol.25 , pp. 5444-5452
    • Belák, S.1
  • 4
    • 14644393522 scopus 로고    scopus 로고
    • The molecular diagnosis of porcine viral diseases: a review
    • Belák S. The molecular diagnosis of porcine viral diseases: a review. Acta Vet. Hung. 2005, 53:113-124.
    • (2005) Acta Vet. Hung. , vol.53 , pp. 113-124
    • Belák, S.1
  • 6
    • 29244438450 scopus 로고    scopus 로고
    • Standardisation of data from real-time quantitative PCR methods - evaluation of outliers and comparison of calibration curves
    • Burns M.J., Nixon G.J., Foy C.A., Harris N. Standardisation of data from real-time quantitative PCR methods - evaluation of outliers and comparison of calibration curves. BMC Biotechnol. 2005, 5:31.
    • (2005) BMC Biotechnol. , vol.5 , pp. 31
    • Burns, M.J.1    Nixon, G.J.2    Foy, C.A.3    Harris, N.4
  • 7
    • 84873123487 scopus 로고    scopus 로고
    • A SYBR Green-based real-time RT-PCR assay for simple and rapid detection and differentiation of highly pathogenic and classical type 2 porcine reproductive and respiratory syndrome virus circulating in China
    • Chai Z., Ma W., Fu F., Lang Y., Wang W., Tong G., Liu Q., Cai X., Li X. A SYBR Green-based real-time RT-PCR assay for simple and rapid detection and differentiation of highly pathogenic and classical type 2 porcine reproductive and respiratory syndrome virus circulating in China. Arch. Virol. 2013, 158:407-415.
    • (2013) Arch. Virol. , vol.158 , pp. 407-415
    • Chai, Z.1    Ma, W.2    Fu, F.3    Lang, Y.4    Wang, W.5    Tong, G.6    Liu, Q.7    Cai, X.8    Li, X.9
  • 8
    • 33745858019 scopus 로고    scopus 로고
    • Porcine reproductive and respiratory syndrome virus
    • Cho J.G., Dee S.A. Porcine reproductive and respiratory syndrome virus. Theriogenology 2006, 66:655-662.
    • (2006) Theriogenology , vol.66 , pp. 655-662
    • Cho, J.G.1    Dee, S.A.2
  • 10
    • 34247464685 scopus 로고    scopus 로고
    • Diversity and evolution of a newly emerged North American Type 1 porcine arterivirus: analysis of isolates collected between 1999 and 2004
    • Fang Y., Schneider P., Zhang W.P., Faaberg K.S., Nelson E.A., Rowland R.R.R. Diversity and evolution of a newly emerged North American Type 1 porcine arterivirus: analysis of isolates collected between 1999 and 2004. Arch. Virol. 2007, 152:1009-1017.
    • (2007) Arch. Virol. , vol.152 , pp. 1009-1017
    • Fang, Y.1    Schneider, P.2    Zhang, W.P.3    Faaberg, K.S.4    Nelson, E.A.5    Rowland, R.R.R.6
  • 11
    • 0036042217 scopus 로고    scopus 로고
    • The genetic diversity of European type PRRSV is similar to that of the North American type but is geographically skewed within Europe
    • Forsberg R., Storgaard T., Nielsen H.S., Oleksiewicz M.B., Cordioli P., Sala G., Hein J., Bøtner A. The genetic diversity of European type PRRSV is similar to that of the North American type but is geographically skewed within Europe. Virology 2002, 299:38-47.
    • (2002) Virology , vol.299 , pp. 38-47
    • Forsberg, R.1    Storgaard, T.2    Nielsen, H.S.3    Oleksiewicz, M.B.4    Cordioli, P.5    Sala, G.6    Hein, J.7    Bøtner, A.8
  • 13
    • 70349384628 scopus 로고    scopus 로고
    • A review of RT-PCR technologies used in veterinary virology and disease control sensitive and specific diagnosis of five livestock diseases notifiable to the World Organisation for Animal Health
    • Hoffmann B., Beer M., Reid S.M., Mertens P., Oura C.A.L., van Rijn P.A., Slomka M.J., Banks J., Brown I.H., Alexander D.J., King D.P. A review of RT-PCR technologies used in veterinary virology and disease control sensitive and specific diagnosis of five livestock diseases notifiable to the World Organisation for Animal Health. Vet. Microbiol. 2009, 139:1-23.
    • (2009) Vet. Microbiol. , vol.139 , pp. 1-23
    • Hoffmann, B.1    Beer, M.2    Reid, S.M.3    Mertens, P.4    Oura, C.A.L.5    van Rijn, P.A.6    Slomka, M.J.7    Banks, J.8    Brown, I.H.9    Alexander, D.J.10    King, D.P.11
  • 14
    • 33745931047 scopus 로고    scopus 로고
    • A universal heterologous internal control system for duplex real-time RT-PCR assays used in a detection system for pestiviruses
    • Hoffmann B., Depner K., Schirrmeier H., Beer M. A universal heterologous internal control system for duplex real-time RT-PCR assays used in a detection system for pestiviruses. J. Virol. Methods 2006, 136:200-209.
    • (2006) J. Virol. Methods , vol.136 , pp. 200-209
    • Hoffmann, B.1    Depner, K.2    Schirrmeier, H.3    Beer, M.4
  • 16
    • 68949183311 scopus 로고    scopus 로고
    • Development of SYBR green I based one-step real-time RT-PCR assay for the detection and differentiation of very virulent and classical strains of infectious bursal disease virus
    • Kong L.L., Omar A.R., Hair Bejo M., Ideris A., Tan S.W. Development of SYBR green I based one-step real-time RT-PCR assay for the detection and differentiation of very virulent and classical strains of infectious bursal disease virus. J. Virol. Methods 2009, 161:271-279.
    • (2009) J. Virol. Methods , vol.161 , pp. 271-279
    • Kong, L.L.1    Omar, A.R.2    Hair Bejo, M.3    Ideris, A.4    Tan, S.W.5
  • 17
    • 0017360990 scopus 로고
    • The measurement of observer agreement for categorical data
    • Landis J.R., Koch G.G. The measurement of observer agreement for categorical data. Biometrics 1977, 33:159-174.
    • (1977) Biometrics , vol.33 , pp. 159-174
    • Landis, J.R.1    Koch, G.G.2
  • 19
    • 78649333818 scopus 로고    scopus 로고
    • Porcine reproductive and respiratory syndrome virus: an update on an emerging and re-emerging viral disease of swine
    • Lunney J.K., Benfield D.A., Rowland R.R. Porcine reproductive and respiratory syndrome virus: an update on an emerging and re-emerging viral disease of swine. Virus Res. 2010, 154:1-6.
    • (2010) Virus Res. , vol.154 , pp. 1-6
    • Lunney, J.K.1    Benfield, D.A.2    Rowland, R.R.3
  • 22
    • 43649106364 scopus 로고    scopus 로고
    • Simultaneous detection and genotyping of porcine reproductive and respiratory syndrome virus (PRRSV) by real-time RT-PCR and amplicon melting curve analysis using SYBR Green
    • Martínez E., Riera P., Sitjà M., Fang Y., Oliveira S., Maldonado J. Simultaneous detection and genotyping of porcine reproductive and respiratory syndrome virus (PRRSV) by real-time RT-PCR and amplicon melting curve analysis using SYBR Green. Res. Vet. Sci. 2008, 85:184-193.
    • (2008) Res. Vet. Sci. , vol.85 , pp. 184-193
    • Martínez, E.1    Riera, P.2    Sitjà, M.3    Fang, Y.4    Oliveira, S.5    Maldonado, J.6
  • 23
    • 78649316053 scopus 로고    scopus 로고
    • The ever-expanding diversity of porcine reproductive and respiratory syndrome virus
    • Murtaugh M.P., Stadejek T., Abrahante J.E., Lam T.T., Leung F.C. The ever-expanding diversity of porcine reproductive and respiratory syndrome virus. Virus Res. 2010, 154:18-30.
    • (2010) Virus Res. , vol.154 , pp. 18-30
    • Murtaugh, M.P.1    Stadejek, T.2    Abrahante, J.E.3    Lam, T.T.4    Leung, F.C.5
  • 25
    • 15744370504 scopus 로고    scopus 로고
    • New insights into the genetic diversity of European porcine reproductive and respiratory syndrome virus (PRRSV)
    • Pesch S., Meyer C., Ohlinger V.F. New insights into the genetic diversity of European porcine reproductive and respiratory syndrome virus (PRRSV). Vet. Microbiol. 2005, 107:31-48.
    • (2005) Vet. Microbiol. , vol.107 , pp. 31-48
    • Pesch, S.1    Meyer, C.2    Ohlinger, V.F.3
  • 27
    • 84872685189 scopus 로고    scopus 로고
    • Validation of a commercial real-time PCR kit for specific and sensitive detection of Pseudorabies
    • Pol F., Deblanc C., Oger A., Le Dimna M., Simon G., Le Potier M.F. Validation of a commercial real-time PCR kit for specific and sensitive detection of Pseudorabies. J. Virol. Methods 2013, 187:421-423.
    • (2013) J. Virol. Methods , vol.187 , pp. 421-423
    • Pol, F.1    Deblanc, C.2    Oger, A.3    Le Dimna, M.4    Simon, G.5    Le Potier, M.F.6
  • 28
    • 0031568919 scopus 로고    scopus 로고
    • Product differentiation by analysis of DNA melting curves during the polymerase chain reaction
    • Ririe K.M., Rasmussen R.P., Wittwer C.T. Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal. Biochem. 1997, 245:154-160.
    • (1997) Anal. Biochem. , vol.245 , pp. 154-160
    • Ririe, K.M.1    Rasmussen, R.P.2    Wittwer, C.T.3
  • 29
    • 23444453055 scopus 로고    scopus 로고
    • Diagnostic tools for animal diseases
    • Schmitt B., Henderson L. Diagnostic tools for animal diseases. Res. Sci. Tech. 2005, 24:243-250.
    • (2005) Res. Sci. Tech. , vol.24 , pp. 243-250
    • Schmitt, B.1    Henderson, L.2
  • 31
    • 77956626910 scopus 로고    scopus 로고
    • Phylogeny-based evolutionary, demographical, and geographical dissection of north American type 2 porcine reproductive and respiratory syndrome viruses
    • Shi M., Lam T.T., Hon C.C., Murtaugh M.P., Davies P.R., Hui R.K., Li J., Wong L.T., Yip C.W., Jiang J.W., Leung F.C. Phylogeny-based evolutionary, demographical, and geographical dissection of north American type 2 porcine reproductive and respiratory syndrome viruses. J. Virol. 2010, 84:8700-8711.
    • (2010) J. Virol. , vol.84 , pp. 8700-8711
    • Shi, M.1    Lam, T.T.2    Hon, C.C.3    Murtaugh, M.P.4    Davies, P.R.5    Hui, R.K.6    Li, J.7    Wong, L.T.8    Yip, C.W.9    Jiang, J.W.10    Leung, F.C.11
  • 32
    • 78649315620 scopus 로고    scopus 로고
    • Taming PRRSV: revisiting the control strategies and vaccine design
    • Thanawongnuwech R., Suradhat S. Taming PRRSV: revisiting the control strategies and vaccine design. Virus Res. 2010, 154:133-140.
    • (2010) Virus Res. , vol.154 , pp. 133-140
    • Thanawongnuwech, R.1    Suradhat, S.2
  • 33
    • 84855230086 scopus 로고    scopus 로고
    • Identification of a genetically diverse sequence of porcine reproductive and respiratory syndrome virus in Slovenia and the impact on the sensitivity of four molecular tests
    • Toplak I., Rihtarič D., Hostnik P., Grom J., Štukelj M., Valenčak Z. Identification of a genetically diverse sequence of porcine reproductive and respiratory syndrome virus in Slovenia and the impact on the sensitivity of four molecular tests. J. Virol. Methods 2012, 179:51-56.
    • (2012) J. Virol. Methods , vol.179 , pp. 51-56
    • Toplak, I.1    Rihtarič, D.2    Hostnik, P.3    Grom, J.4    Štukelj, M.5    Valenčak, Z.6
  • 34
    • 0037232194 scopus 로고    scopus 로고
    • Duration of infection and proportion of pigs persistently infected with porcine reproductive and respiratory syndrome virus
    • Wills R.W., Doster A.R., Galeota J.A., Sur J.H., Osorio F.A. Duration of infection and proportion of pigs persistently infected with porcine reproductive and respiratory syndrome virus. J. Clin. Microbiol. 2003, 41:58-62.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 58-62
    • Wills, R.W.1    Doster, A.R.2    Galeota, J.A.3    Sur, J.H.4    Osorio, F.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.