Genetic characterization of clade 2.3.2.1 avian influenza A(H5N1) viruses, Indonesia, 2012

Emerging Infectious Diseases

Volumn 20, Issue 4, 2014, Pages 671-674

  Dharmayanti, Ni Luh Putu Indi ^a   Hartawan, Risza ^a   Pudjiatmoko, ^b   Wibawa, Hendra ^c   Hardiman, ^a   Balish, Amanda ^d   Donis, Ruben ^d   Todd Davis, C ^d   Samaan, Gina ^d  

^a Indonesian Research Center for Veterinary Science   (Indonesia)

^b INDONESIAN AGENCY FOR AGRICULTURAL RESEARCH AND DEVELOPMENT   (Indonesia)

^c Disease Investigation Center Wates   (Indonesia)

^d CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AVIAN INFLUENZA VIRUS; CLADISTICS; GENETIC ANALYSIS; INDONESIA; MORTALITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ANALYSIS; ANIMAL; AVIAN INFLUENZA; BIRD DISEASE; DNA SEQUENCE; DUCK; GENETICS; INFLUENZA VIRUS A H5N1; PROCEDURES; VIROLOGY;

ANIMALS; DUCKS; INDONESIA; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA IN BIRDS; PHYLOGENY; POULTRY DISEASES; SEQUENCE ANALYSIS, DNA;

EID: 84896457009     PISSN: 10806040     EISSN: 10806059     Source Type: Journal    
DOI: 10.3201/eid2004.130517     Document Type: Article

References (15)

1. World Health Organization. Evolution of H5N1 avian influenza viruses in Asia. Emerg Infect Dis. 2005;11:1515-21. http://dx.doi. org/10.3201/eid1110.050644
2. Lam TT, Hon CC, Pybus OG, Kosakovsky Pond SL, Wong RT, Yip CW, et al. Evolutionary and transmission dynamics of reassortant H5N1 influenza virus in Indonesia. PLoS Pathog. 2008;4:e1000130. http://dx.doi.org/10.1371/journal.ppat.1000130
3. Vijaykrishna D, Bahl J, Riley S, Duan L, Zhang JX, Chen H, et al. Evolutionary dynamics and emergence of panzootic H5N1 influenza viruses. PLoS Pathog. 2008;4:e1000161. http://dx.doi.org/10.1371/ journal.ppat.1000161
4. World Health Organization. Towards a unified nomenclature system for the highly pathogenic H5N1 avian influenza viruses. 2007 [cited 2011 Jul 8]. http://www.who.int/csr/disease/avian_influenza/ guidelines/nomenclature/en/.
5. Swayne DE. Understanding the complex pathobiology of high pathogenicity avian influenza viruses in birds. Avian Dis. 2007;51 (Suppl):242-9. http://dx.doi.org/10.1637/7763-110706-REGR.1
6. Wibawa H, Prijono WB, Dharmayanti NLPI, Irianingsih SH, Miswati Y, Anieka R, et al. Disease outbreak investigation in ducks in Central Java, Jogjakarta and East Java: identification of a new clade of avian influenza A(H5N1) virus in Indonesia [in Indonesian]. Buletin Laboratorium Veteriner. 2012;12(4).
7. Fouchier RA, Bestebroer TM, Herfst S, Van Der Kemp L, Rimmelzwaan GF, Osterhaus AD. Detection of influenza A viruses from different species by PCR amplification of conserved sequences in the matrix gene. J Clin Microbiol. 2000;38:4096-101.
8. World Health Organization. WHO manual on animal influenza diagnosis and surveillance. 2002 [cited 2011 Jul 8]. http://www.who.int/ csr/resources/publications/influenza/en/whocdscsrncs20025rev.pdf
9. Younan M, Poh MK, Elassal E, Davis T, Rivailler P, Balish AL, et al. Microevolution of highly pathogenic avian influenza A(H5N1) viruses isolated from humans, Egypt, 2007-2011. Emerg Infect Dis. 2013;19:43-50. http://dx.doi.org/10.3201/eid1901.121080
10. Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 2007;24:1596-9. http://dx.doi.org/10.1093/molbev/msm092
11. Stevens J, Blixt O, Tumpey TM, Taubenberger JK, Paulson JC, Wilson IA. Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus. Science. 2006;312:404-10. http://dx.doi.org/10.1126/science.1124513
12. World Health Organization. Antigenic and genetic characteristics of zoonotic influenza viruses and development of candidate vaccine viruses for pandemic preparedness. 2013 [cited 2013 Mar 4]. http:// www.who.int/influenza/vaccines/virus/201302_h5h7h9_vaccine virusupdate.pdf
13. Schmolke M, Manicassamy B, Pena L, Sutton T, Hai R, Varga ZT, et al. Differential contribution of PB1-F2 to the virulence of highly pathogenic H5N1 influenza A virus in mammalian and avian species. PLoS Pathog. 2011;7:e1002186. http://dx.doi.org/10.1371/ journal.ppat.1002186
14. World Organization for Animal Health. Outbreaks of highly pathogenic avian influenza (subtype H5N1) in poultry. 2013 [cited 2013 Feb 15]. http://www.oie.int/animal-health-in-the-world/updateon-avian-influenza/2013/
15. World Health Organization. Situation updates-avian influenza. 2013 [cited 2013 Feb 15]. http://www.who.int/influenza/human_ animal_interface/avian_influenza/archive/en/index.html