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Volumn 4, Issue 1, 2014, Pages

Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing

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EID: 84896342409     PISSN: None     EISSN: 20439113     Source Type: Journal    
DOI: 10.1186/2043-9113-4-1     Document Type: Article
Times cited : (7)

References (65)
  • 1
    • 84896373522 scopus 로고    scopus 로고
    • Health and nutritional properties of probiotics in food including powder milk with live lactic acid bacteria
    • City; 2001, FAO/WHO
    • FAO/WHO Health and nutritional properties of probiotics in food including powder milk with live lactic acid bacteria. Book Health and nutritional properties of probiotics in food including powder milk with live lactic acid bacteria http://www.who.int/foodsafety/publications/fs_management/en/probiotics.pdf. City; 2001, FAO/WHO.
    • Book Health and nutritional properties of probiotics in food including powder milk with live lactic acid bacteria
  • 2
    • 0035820307 scopus 로고    scopus 로고
    • Probiotics in primary prevention of atopic disease: a randomised placebo-controlled trial
    • 10.1016/S0140-6736(00)04259-8, 11297958
    • Kalliomaki M, Salminen S, Arvilommi H, Kero P, Koskinen P, Isolauri E. Probiotics in primary prevention of atopic disease: a randomised placebo-controlled trial. Lancet 2001, 357:1076-1079. 10.1016/S0140-6736(00)04259-8, 11297958.
    • (2001) Lancet , vol.357 , pp. 1076-1079
    • Kalliomaki, M.1    Salminen, S.2    Arvilommi, H.3    Kero, P.4    Koskinen, P.5    Isolauri, E.6
  • 4
    • 0035812167 scopus 로고    scopus 로고
    • In vitro adherence properties of lactobacillus rhamnosus DR20 and bifidobacterium lactis DR10 strains and their antagonistic activity against an enterotoxigenic Escherichia coli
    • 10.1016/S0168-1605(01)00440-8, 11518430
    • Gopal PK, Prasad J, Smart J, Gill HS. In vitro adherence properties of lactobacillus rhamnosus DR20 and bifidobacterium lactis DR10 strains and their antagonistic activity against an enterotoxigenic Escherichia coli. Int J Food Microbiol 2001, 67:207-216. 10.1016/S0168-1605(01)00440-8, 11518430.
    • (2001) Int J Food Microbiol , vol.67 , pp. 207-216
    • Gopal, P.K.1    Prasad, J.2    Smart, J.3    Gill, H.S.4
  • 5
    • 0035140141 scopus 로고    scopus 로고
    • Protective effect of Lactobacillus casei strain Shirota on Shiga toxin-producing Escherichia coli O157:H7 infection in infant rabbits
    • 10.1128/IAI.69.2.1101-1108.2001, 97991, 11160007
    • Ogawa M, Shimizu K, Nomoto K, Takahashi M, Watanuki M, Tanaka R, Tanaka T, Hamabata T, Yamasaki S, Takeda Y. Protective effect of Lactobacillus casei strain Shirota on Shiga toxin-producing Escherichia coli O157:H7 infection in infant rabbits. Infect Immun 2001, 69:1101-1108. 10.1128/IAI.69.2.1101-1108.2001, 97991, 11160007.
    • (2001) Infect Immun , vol.69 , pp. 1101-1108
    • Ogawa, M.1    Shimizu, K.2    Nomoto, K.3    Takahashi, M.4    Watanuki, M.5    Tanaka, R.6    Tanaka, T.7    Hamabata, T.8    Yamasaki, S.9    Takeda, Y.10
  • 6
    • 0035150486 scopus 로고    scopus 로고
    • Probiotic agents to protect the urogenital tract against infection
    • Reid G. Probiotic agents to protect the urogenital tract against infection. Am J Clin Nutr 2001, 73:437S-443S.
    • (2001) Am J Clin Nutr , vol.73
    • Reid, G.1
  • 7
    • 84855446498 scopus 로고    scopus 로고
    • Treating TNBS-induced colitis in rats with probiotics
    • Wan YM, Zhu YQ, Xia B, Luo J. Treating TNBS-induced colitis in rats with probiotics. Turk J Gastroenterol 2011, 22:486-493.
    • (2011) Turk J Gastroenterol , vol.22 , pp. 486-493
    • Wan, Y.M.1    Zhu, Y.Q.2    Xia, B.3    Luo, J.4
  • 8
    • 79951670849 scopus 로고    scopus 로고
    • Bifidobacterium animalis subsp. lactis BB-12 in reducing the risk of infections in infancy
    • 10.1017/S0007114510003685, 20863419
    • Taipale T, Pienihakkinen K, Isolauri E, Larsen C, Brockmann E, Alanen P, Jokela J, Soderling E. Bifidobacterium animalis subsp. lactis BB-12 in reducing the risk of infections in infancy. Br J Nutr 2011, 105:409-416. 10.1017/S0007114510003685, 20863419.
    • (2011) Br J Nutr , vol.105 , pp. 409-416
    • Taipale, T.1    Pienihakkinen, K.2    Isolauri, E.3    Larsen, C.4    Brockmann, E.5    Alanen, P.6    Jokela, J.7    Soderling, E.8
  • 9
    • 53049095486 scopus 로고    scopus 로고
    • A differential effect of 2 probiotics in the prevention of eczema and atopy: a double-blind, randomized, placebo-controlled trial
    • 10.1016/j.jaci.2008.07.011, 18762327
    • Wickens K, Black PN, Stanley TV, Mitchell E, Fitzharris P, Tannock GW, Purdie G, Crane J. A differential effect of 2 probiotics in the prevention of eczema and atopy: a double-blind, randomized, placebo-controlled trial. J Allergy Clin Immunol 2008, 122:788-794. 10.1016/j.jaci.2008.07.011, 18762327.
    • (2008) J Allergy Clin Immunol , vol.122 , pp. 788-794
    • Wickens, K.1    Black, P.N.2    Stanley, T.V.3    Mitchell, E.4    Fitzharris, P.5    Tannock, G.W.6    Purdie, G.7    Crane, J.8
  • 10
    • 27744576789 scopus 로고    scopus 로고
    • Real-time polymerase chain reaction for detecting bacterial DNA directly from blood of neonates being evaluated for sepsis
    • 10.1016/S1525-1578(10)60590-9, 1867550, 16258155
    • Jordan JA, Durso MB. Real-time polymerase chain reaction for detecting bacterial DNA directly from blood of neonates being evaluated for sepsis. J Mol Diagn 2005, 7:575-581. 10.1016/S1525-1578(10)60590-9, 1867550, 16258155.
    • (2005) J Mol Diagn , vol.7 , pp. 575-581
    • Jordan, J.A.1    Durso, M.B.2
  • 12
    • 1842409545 scopus 로고    scopus 로고
    • Molecular diagnosis of bacterial endocarditis by broad-range PCR amplification and direct sequencing
    • 230051, 9350723
    • Goldenberger D, Kunzli A, Vogt P, Zbinden R, Altwegg M. Molecular diagnosis of bacterial endocarditis by broad-range PCR amplification and direct sequencing. J Clin Microbiol 1997, 35:2733-2739. 230051, 9350723.
    • (1997) J Clin Microbiol , vol.35 , pp. 2733-2739
    • Goldenberger, D.1    Kunzli, A.2    Vogt, P.3    Zbinden, R.4    Altwegg, M.5
  • 13
    • 0042022029 scopus 로고    scopus 로고
    • Seronegative bacteremic melioidosis caused by Burkholderia pseudomallei with ambiguous biochemical profile: clinical importance of accurate identification by 16S rRNA gene and groEL gene sequencing
    • 10.1128/JCM.41.8.3973-3977.2003, 179777, 12904433
    • Woo PC, Lau SK, Woo GK, Fung AM, Ngan AH, Hui WT, Yuen KY. Seronegative bacteremic melioidosis caused by Burkholderia pseudomallei with ambiguous biochemical profile: clinical importance of accurate identification by 16S rRNA gene and groEL gene sequencing. J Clin Microbiol 2003, 41:3973-3977. 10.1128/JCM.41.8.3973-3977.2003, 179777, 12904433.
    • (2003) J Clin Microbiol , vol.41 , pp. 3973-3977
    • Woo, P.C.1    Lau, S.K.2    Woo, G.K.3    Fung, A.M.4    Ngan, A.H.5    Hui, W.T.6    Yuen, K.Y.7
  • 14
    • 0017693393 scopus 로고
    • Classification of methanogenic bacteria by 16S ribosomal RNA characterization
    • 10.1073/pnas.74.10.4537, 431980, 16592452
    • Fox GE, Magrum LJ, Balch WE, Wolfe RS, Woese CR. Classification of methanogenic bacteria by 16S ribosomal RNA characterization. Proc Natl Acad Sci U S A 1977, 74:4537-4541. 10.1073/pnas.74.10.4537, 431980, 16592452.
    • (1977) Proc Natl Acad Sci U S A , vol.74 , pp. 4537-4541
    • Fox, G.E.1    Magrum, L.J.2    Balch, W.E.3    Wolfe, R.S.4    Woese, C.R.5
  • 15
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies-the next generation
    • 10.1038/nrg2626, 19997069
    • Metzker ML. Sequencing technologies-the next generation. Nat Rev Genet 2010, 11:31-46. 10.1038/nrg2626, 19997069.
    • (2010) Nat Rev Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 17
    • 52449129099 scopus 로고    scopus 로고
    • Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories
    • 10.1111/j.1469-0691.2008.02070.x, 18828852
    • Woo PC, Lau SK, Teng JL, Tse H, Yuen KY. Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories. Clin Microbiol Infect 2008, 14:908-934. 10.1111/j.1469-0691.2008.02070.x, 18828852.
    • (2008) Clin Microbiol Infect , vol.14 , pp. 908-934
    • Woo, P.C.1    Lau, S.K.2    Teng, J.L.3    Tse, H.4    Yuen, K.Y.5
  • 19
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
    • 10.1186/1471-2105-7-371, 1564154, 16893466
    • Lozupone C, Hamady M, Knight R. UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 2006, 7:371. 10.1186/1471-2105-7-371, 1564154, 16893466.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 20
    • 84860483735 scopus 로고    scopus 로고
    • Next-generation sequencing reveals significant bacterial diversity of botrytized wine
    • 10.1371/journal.pone.0036357, 3341366, 22563494
    • Bokulich NA, Joseph CM, Allen G, Benson AK, Mills DA. Next-generation sequencing reveals significant bacterial diversity of botrytized wine. PloS one 2012, 7:e36357. 10.1371/journal.pone.0036357, 3341366, 22563494.
    • (2012) PloS one , vol.7
    • Bokulich, N.A.1    Joseph, C.M.2    Allen, G.3    Benson, A.K.4    Mills, D.A.5
  • 21
    • 78650453707 scopus 로고    scopus 로고
    • Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
    • 10.1093/nar/gkq873, 3001100, 20880993
    • Claesson MJ, Wang Q, O'Sullivan O, Greene-Diniz R, Cole JR, Ross RP, O'Toole PW. Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions. Nucleic Acids Res 2010, 38:e200. 10.1093/nar/gkq873, 3001100, 20880993.
    • (2010) Nucleic Acids Res , vol.38
    • Claesson, M.J.1    Wang, Q.2    O'Sullivan, O.3    Greene-Diniz, R.4    Cole, J.R.5    Ross, R.P.6    O'Toole, P.W.7
  • 22
    • 0035162224 scopus 로고    scopus 로고
    • Comparison of fluorescent in situ hybridization and conventional culturing for detection of Helicobacter pylori in gastric biopsy specimens
    • 10.1128/JCM.39.1.304-308.2001, 87719, 11136788
    • Russmann H, Kempf VA, Koletzko S, Heesemann J, Autenrieth IB. Comparison of fluorescent in situ hybridization and conventional culturing for detection of Helicobacter pylori in gastric biopsy specimens. J Clin Microbiol 2001, 39:304-308. 10.1128/JCM.39.1.304-308.2001, 87719, 11136788.
    • (2001) J Clin Microbiol , vol.39 , pp. 304-308
    • Russmann, H.1    Kempf, V.A.2    Koletzko, S.3    Heesemann, J.4    Autenrieth, I.B.5
  • 23
    • 84907133299 scopus 로고
    • Australia's media campaign against drug abuse
    • Barber JJ, Grichting WL. Australia's media campaign against drug abuse. Int J Addict 1990, 25:693-708.
    • (1990) Int J Addict , vol.25 , pp. 693-708
    • Barber, J.J.1    Grichting, W.L.2
  • 24
    • 78650776251 scopus 로고    scopus 로고
    • Optimizing the analysis of human intestinal microbiota with phylogenetic microarray
    • 10.1111/j.1574-6941.2010.01009.x, 3077101, 21155851
    • Rigsbee L, Agans R, Foy BD, Paliy O. Optimizing the analysis of human intestinal microbiota with phylogenetic microarray. FEMS Microbiol Ecol 2011, 75:332-342. 10.1111/j.1574-6941.2010.01009.x, 3077101, 21155851.
    • (2011) FEMS Microbiol Ecol , vol.75 , pp. 332-342
    • Rigsbee, L.1    Agans, R.2    Foy, B.D.3    Paliy, O.4
  • 25
    • 31044437052 scopus 로고    scopus 로고
    • Prevention of laboratory-acquired brucellosis: significant side effects of prophylaxis
    • 10.1086/499112, 16392095
    • Maley MW, Kociuba K, Chan RC. Prevention of laboratory-acquired brucellosis: significant side effects of prophylaxis. Clin Infect Dis 2006, 42:433-434. 10.1086/499112, 16392095.
    • (2006) Clin Infect Dis , vol.42 , pp. 433-434
    • Maley, M.W.1    Kociuba, K.2    Chan, R.C.3
  • 26
    • 34848850503 scopus 로고    scopus 로고
    • Review of clinical and laboratory features of human brucellosis
    • 10.4103/0255-0857.34758, 17901634
    • Mantur BG, Amarnath SK, Shinde RS. Review of clinical and laboratory features of human brucellosis. Indian J Med Microbiol 2007, 25:188-202. 10.4103/0255-0857.34758, 17901634.
    • (2007) Indian J Med Microbiol , vol.25 , pp. 188-202
    • Mantur, B.G.1    Amarnath, S.K.2    Shinde, R.S.3
  • 28
    • 74549200558 scopus 로고    scopus 로고
    • Diarrhoea-predominant irritable bowel syndrome distinguishable by 16S rRNA gene phylotype quantification
    • 10.3748/wjg.15.5936, 2795180, 20014457
    • Lyra A, Rinttila T, Nikkila J, Krogius-Kurikka L, Kajander K, Malinen E, Matto J, Makela L, Palva A. Diarrhoea-predominant irritable bowel syndrome distinguishable by 16S rRNA gene phylotype quantification. World J Gastroenterol 2009, 15:5936-5945. 10.3748/wjg.15.5936, 2795180, 20014457.
    • (2009) World J Gastroenterol , vol.15 , pp. 5936-5945
    • Lyra, A.1    Rinttila, T.2    Nikkila, J.3    Krogius-Kurikka, L.4    Kajander, K.5    Malinen, E.6    Matto, J.7    Makela, L.8    Palva, A.9
  • 29
    • 78650037263 scopus 로고    scopus 로고
    • Differential adaptation of human gut microbiota to bariatric surgery-induced weight loss: links with metabolic and low-grade inflammation markers
    • 10.2337/db10-0253, 2992765, 20876719
    • Furet JP, Kong LC, Tap J, Poitou C, Basdevant A, Bouillot JL, Mariat D, Corthier G, Dore J, Henegar C, et al. Differential adaptation of human gut microbiota to bariatric surgery-induced weight loss: links with metabolic and low-grade inflammation markers. Diabetes 2010, 59:3049-3057. 10.2337/db10-0253, 2992765, 20876719.
    • (2010) Diabetes , vol.59 , pp. 3049-3057
    • Furet, J.P.1    Kong, L.C.2    Tap, J.3    Poitou, C.4    Basdevant, A.5    Bouillot, J.L.6    Mariat, D.7    Corthier, G.8    Dore, J.9    Henegar, C.10
  • 31
    • 17044364421 scopus 로고    scopus 로고
    • Comparison between rpoB and 16S rRNA gene sequencing for molecular identification of 168 clinical isolates of corynebacterium
    • 10.1128/JCM.43.4.1934-1936.2005, 1081344, 15815024
    • Khamis A, Raoult D, La Scola B. Comparison between rpoB and 16S rRNA gene sequencing for molecular identification of 168 clinical isolates of corynebacterium. J Clin Microbiol 2005, 43:1934-1936. 10.1128/JCM.43.4.1934-1936.2005, 1081344, 15815024.
    • (2005) J Clin Microbiol , vol.43 , pp. 1934-1936
    • Khamis, A.1    Raoult, D.2    La Scola, B.3
  • 32
    • 83155177948 scopus 로고    scopus 로고
    • Effect of antibiotic growth promoters on intestinal microbiota in food animals: a novel model for studying the relationship between gut microbiota and human obesity?
    • 3153029, 21833309
    • Lin J. Effect of antibiotic growth promoters on intestinal microbiota in food animals: a novel model for studying the relationship between gut microbiota and human obesity?. Front Microbiol 2011, 2:53. 3153029, 21833309.
    • (2011) Front Microbiol , vol.2 , pp. 53
    • Lin, J.1
  • 33
    • 84888266278 scopus 로고    scopus 로고
    • Epidemiology of whooping cough and typing of Bordetella pertussis
    • 10.2217/fmb.13.111, 24199799
    • Hegerle N, Guiso N. Epidemiology of whooping cough and typing of Bordetella pertussis. Future Microbiol 2013, 8(11):1391-1403. 10.2217/fmb.13.111, 24199799.
    • (2013) Future Microbiol , vol.8 , Issue.11 , pp. 1391-1403
    • Hegerle, N.1    Guiso, N.2
  • 34
    • 41949087288 scopus 로고    scopus 로고
    • Brucella: a pathogen without classic virulence genes
    • 10.1016/j.vetmic.2007.11.023, 18226477
    • Seleem MN, Boyle SM, Sriranganathan N. Brucella: a pathogen without classic virulence genes. Vet Microbiol 2008, 129:1-14. 10.1016/j.vetmic.2007.11.023, 18226477.
    • (2008) Vet Microbiol , vol.129 , pp. 1-14
    • Seleem, M.N.1    Boyle, S.M.2    Sriranganathan, N.3
  • 35
    • 79952106942 scopus 로고    scopus 로고
    • Chlamydia pneumoniae infection and lung cancer risk: a meta-analysis
    • 10.1016/j.ejca.2010.11.003, 21194924
    • Zhan P, Suo LJ, Qian Q, Shen XK, Qiu LX, Yu LK, Song Y. Chlamydia pneumoniae infection and lung cancer risk: a meta-analysis. Eur J Cancer 2011, 47:742-747. 10.1016/j.ejca.2010.11.003, 21194924.
    • (2011) Eur J Cancer , vol.47 , pp. 742-747
    • Zhan, P.1    Suo, L.J.2    Qian, Q.3    Shen, X.K.4    Qiu, L.X.5    Yu, L.K.6    Song, Y.7
  • 37
    • 33645072244 scopus 로고    scopus 로고
    • Infectious agents in mucosa-associated lymphoid tissue-type lymphomas: pathogenic role and therapeutic perspectives
    • 10.3816/CLM.2006.n.003, 16507206
    • Guidoboni M, Ferreri AJ, Ponzoni M, Doglioni C, Dolcetti R. Infectious agents in mucosa-associated lymphoid tissue-type lymphomas: pathogenic role and therapeutic perspectives. Clin Lymphoma Myeloma 2006, 6:289-300. 10.3816/CLM.2006.n.003, 16507206.
    • (2006) Clin Lymphoma Myeloma , vol.6 , pp. 289-300
    • Guidoboni, M.1    Ferreri, A.J.2    Ponzoni, M.3    Doglioni, C.4    Dolcetti, R.5
  • 39
    • 12744272147 scopus 로고    scopus 로고
    • Molecular genetic methods for diagnosis and characterisation of Chlamydia trachomatis and Neisseria gonorrhoeae: impact on epidemiological surveillance and interventions
    • 10.1111/j.1600-0463.2004.apm11211-1205.x, 15638837
    • Fredlund H, Falk L, Jurstrand M, Unemo M. Molecular genetic methods for diagnosis and characterisation of Chlamydia trachomatis and Neisseria gonorrhoeae: impact on epidemiological surveillance and interventions. APMIS 2004, 112:771-784. 10.1111/j.1600-0463.2004.apm11211-1205.x, 15638837.
    • (2004) APMIS , vol.112 , pp. 771-784
    • Fredlund, H.1    Falk, L.2    Jurstrand, M.3    Unemo, M.4
  • 40
    • 77951102896 scopus 로고    scopus 로고
    • Pseudomembranes in a patient with flare-up of inflammatory bowel disease (IBD): is it only clostridium difficile or is it still an IBD exacerbation?
    • Berdichevski T, Barshack I, Bar-Meir S, Ben-Horin S. Pseudomembranes in a patient with flare-up of inflammatory bowel disease (IBD): is it only clostridium difficile or is it still an IBD exacerbation?. Endoscopy 2010, 42(Suppl 2):E131.
    • (2010) Endoscopy , vol.42 , Issue.SUPPL. 2
    • Berdichevski, T.1    Barshack, I.2    Bar-Meir, S.3    Ben-Horin, S.4
  • 41
  • 42
    • 36048972916 scopus 로고    scopus 로고
    • The role of anaerobic bacteria in cutaneous and soft tissue abscesses and infected cysts
    • 10.1016/j.anaerobe.2007.08.004, 17923425
    • Brook I. The role of anaerobic bacteria in cutaneous and soft tissue abscesses and infected cysts. Anaerobe 2007, 13:171-177. 10.1016/j.anaerobe.2007.08.004, 17923425.
    • (2007) Anaerobe , vol.13 , pp. 171-177
    • Brook, I.1
  • 44
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
    • 10.1093/nar/gks1219, 3531112, 23193283
    • Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glockner FO. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 2013, 41:D590-D596. 10.1093/nar/gks1219, 3531112, 23193283.
    • (2013) Nucleic Acids Res , vol.41
    • Quast, C.1    Pruesse, E.2    Yilmaz, P.3    Gerken, J.4    Schweer, T.5    Yarza, P.6    Peplies, J.7    Glockner, F.O.8
  • 45
    • 70449639806 scopus 로고    scopus 로고
    • MiRExpress: analyzing high-throughput sequencing data for profiling microRNA expression
    • 10.1186/1471-2105-10-328, 2767369, 19821977
    • Wang WC, Lin FM, Chang WC, Lin KY, Huang HD, Lin NS. miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression. BMC Bioinformatics 2009, 10:328. 10.1186/1471-2105-10-328, 2767369, 19821977.
    • (2009) BMC Bioinformatics , vol.10 , pp. 328
    • Wang, W.C.1    Lin, F.M.2    Chang, W.C.3    Lin, K.Y.4    Huang, H.D.5    Lin, N.S.6
  • 46
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • 10.1093/bioinformatics/btp352, 2723002, 19505943, Genome Project Data Processing S
    • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Genome Project Data Processing S The sequence alignment/map format and SAMtools. Bioinformatics 2009, 25:2078-2079. 10.1093/bioinformatics/btp352, 2723002, 19505943, Genome Project Data Processing S.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3    Fennell, T.4    Ruan, J.5    Homer, N.6    Marth, G.7    Abecasis, G.8    Durbin, R.9
  • 47
    • 75449110378 scopus 로고    scopus 로고
    • Systematic review of randomised controlled trials: probiotics for functional constipation
    • 2799919, 20039451
    • Chmielewska A, Szajewska H. Systematic review of randomised controlled trials: probiotics for functional constipation. World J Gastroenterol 2010, 16:69-75. 2799919, 20039451.
    • (2010) World J Gastroenterol , vol.16 , pp. 69-75
    • Chmielewska, A.1    Szajewska, H.2
  • 50
    • 77449095695 scopus 로고    scopus 로고
    • Quantitative differences in intestinal Faecalibacterium prausnitzii in obese Indian children
    • 10.1017/S0007114509992182, 19849869
    • Balamurugan R, George G, Kabeerdoss J, Hepsiba J, Chandragunasekaran AM, Ramakrishna BS. Quantitative differences in intestinal Faecalibacterium prausnitzii in obese Indian children. Br J Nutr 2010, 103:335-338. 10.1017/S0007114509992182, 19849869.
    • (2010) Br J Nutr , vol.103 , pp. 335-338
    • Balamurugan, R.1    George, G.2    Kabeerdoss, J.3    Hepsiba, J.4    Chandragunasekaran, A.M.5    Ramakrishna, B.S.6
  • 51
    • 84862230115 scopus 로고    scopus 로고
    • Obesity-associated gut microbiota is enriched in lactobacillus reuteri and depleted in Bifidobacterium animalis and methanobrevibacter smithii
    • 10.1038/ijo.2011.153, 3374072, 21829158
    • Million M, Maraninchi M, Henry M, Armougom F, Richet H, Carrieri P, Valero R, Raccah D, Vialettes B, Raoult D. Obesity-associated gut microbiota is enriched in lactobacillus reuteri and depleted in Bifidobacterium animalis and methanobrevibacter smithii. Int J Obes (Lond) 2012, 36:817-825. 10.1038/ijo.2011.153, 3374072, 21829158.
    • (2012) Int J Obes (Lond) , vol.36 , pp. 817-825
    • Million, M.1    Maraninchi, M.2    Henry, M.3    Armougom, F.4    Richet, H.5    Carrieri, P.6    Valero, R.7    Raccah, D.8    Vialettes, B.9    Raoult, D.10
  • 52
    • 70349631208 scopus 로고    scopus 로고
    • Monitoring bacterial community of human gut microbiota reveals an increase in lactobacillus in obese patients and methanogens in anorexic patients
    • 10.1371/journal.pone.0007125, 2742902, 19774074
    • Armougom F, Henry M, Vialettes B, Raccah D, Raoult D. Monitoring bacterial community of human gut microbiota reveals an increase in lactobacillus in obese patients and methanogens in anorexic patients. PloS one 2009, 4:e7125. 10.1371/journal.pone.0007125, 2742902, 19774074.
    • (2009) PloS one , vol.4
    • Armougom, F.1    Henry, M.2    Vialettes, B.3    Raccah, D.4    Raoult, D.5
  • 53
    • 78149341679 scopus 로고    scopus 로고
    • Ulcerative colitis and irritable bowel patients exhibit distinct abnormalities of the gut microbiota
    • 10.1186/1471-230X-10-134, 3002299, 21073731
    • Noor SO, Ridgway K, Scovell L, Kemsley EK, Lund EK, Jamieson C, Johnson IT, Narbad A. Ulcerative colitis and irritable bowel patients exhibit distinct abnormalities of the gut microbiota. BMC Gastroenterol 2010, 10:134. 10.1186/1471-230X-10-134, 3002299, 21073731.
    • (2010) BMC Gastroenterol , vol.10 , pp. 134
    • Noor, S.O.1    Ridgway, K.2    Scovell, L.3    Kemsley, E.K.4    Lund, E.K.5    Jamieson, C.6    Johnson, I.T.7    Narbad, A.8
  • 54
    • 84861185968 scopus 로고    scopus 로고
    • Alterations in composition and diversity of the intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome
    • e248, 10.1111/j.1365-2982.2012.01891.x, 22339879
    • Carroll IM, Ringel-Kulka T, Siddle JP, Ringel Y. Alterations in composition and diversity of the intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome. Neurogastroenterol Motil 2012, 24:521-530. e248, 10.1111/j.1365-2982.2012.01891.x, 22339879.
    • (2012) Neurogastroenterol Motil , vol.24 , pp. 521-530
    • Carroll, I.M.1    Ringel-Kulka, T.2    Siddle, J.P.3    Ringel, Y.4
  • 55
    • 84861201380 scopus 로고    scopus 로고
    • Increase in fecal primary bile acids and dysbiosis in patients with diarrhea-predominant irritable bowel syndrome
    • e246-517, 10.1111/j.1365-2982.2012.01893.x, 22356587
    • Duboc H, Rainteau D, Rajca S, Humbert L, Farabos D, Maubert M, Grondin V, Jouet P, Bouhassira D, Seksik P, et al. Increase in fecal primary bile acids and dysbiosis in patients with diarrhea-predominant irritable bowel syndrome. Neurogastroenterol Motil 2012, 24:513-520. e246-517, 10.1111/j.1365-2982.2012.01893.x, 22356587.
    • (2012) Neurogastroenterol Motil , vol.24 , pp. 513-520
    • Duboc, H.1    Rainteau, D.2    Rajca, S.3    Humbert, L.4    Farabos, D.5    Maubert, M.6    Grondin, V.7    Jouet, P.8    Bouhassira, D.9    Seksik, P.10
  • 56
    • 79251495453 scopus 로고    scopus 로고
    • Molecular analysis of faecal and duodenal samples reveals significantly higher prevalence and numbers of Pseudomonas aeruginosa in irritable bowel syndrome
    • 10.1099/jmm.0.022848-0, 20947663
    • Kerckhoffs AP, Ben-Amor K, Samsom M, van der Rest ME, de Vogel J, Knol J, Akkermans LM. Molecular analysis of faecal and duodenal samples reveals significantly higher prevalence and numbers of Pseudomonas aeruginosa in irritable bowel syndrome. J Med Microbiol 2011, 60:236-245. 10.1099/jmm.0.022848-0, 20947663.
    • (2011) J Med Microbiol , vol.60 , pp. 236-245
    • Kerckhoffs, A.P.1    Ben-Amor, K.2    Samsom, M.3    van der Rest, M.E.4    de Vogel, J.5    Knol, J.6    Akkermans, L.M.7
  • 58
    • 80054857288 scopus 로고    scopus 로고
    • Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndrome
    • 10.1053/j.gastro.2011.07.043, 21820992
    • Rajilic-Stojanovic M, Biagi E, Heilig HG, Kajander K, Kekkonen RA, Tims S, de Vos WM. Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndrome. Gastroenterology 2011, 141:1792-1801. 10.1053/j.gastro.2011.07.043, 21820992.
    • (2011) Gastroenterology , vol.141 , pp. 1792-1801
    • Rajilic-Stojanovic, M.1    Biagi, E.2    Heilig, H.G.3    Kajander, K.4    Kekkonen, R.A.5    Tims, S.6    de Vos, W.M.7
  • 60
    • 79959835543 scopus 로고    scopus 로고
    • Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn's disease using terminal restriction fragment length polymorphism analysis
    • 10.1007/s00535-010-0368-4, 21253779
    • Andoh A, Imaeda H, Aomatsu T, Inatomi O, Bamba S, Sasaki M, Saito Y, Tsujikawa T, Fujiyama Y. Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn's disease using terminal restriction fragment length polymorphism analysis. J Gastroenterol 2011, 46:479-486. 10.1007/s00535-010-0368-4, 21253779.
    • (2011) J Gastroenterol , vol.46 , pp. 479-486
    • Andoh, A.1    Imaeda, H.2    Aomatsu, T.3    Inatomi, O.4    Bamba, S.5    Sasaki, M.6    Saito, Y.7    Tsujikawa, T.8    Fujiyama, Y.9
  • 61
    • 33748792311 scopus 로고    scopus 로고
    • Temperature gradient gel electrophoresis of fecal 16S rRNA reveals active Escherichia coli in the microbiota of patients with ulcerative colitis
    • 10.1128/JCM.02600-05, 1594675, 16954244
    • Sokol H, Lepage P, Seksik P, Dore J, Marteau P. Temperature gradient gel electrophoresis of fecal 16S rRNA reveals active Escherichia coli in the microbiota of patients with ulcerative colitis. J Clin Microbiol 2006, 44:3172-3177. 10.1128/JCM.02600-05, 1594675, 16954244.
    • (2006) J Clin Microbiol , vol.44 , pp. 3172-3177
    • Sokol, H.1    Lepage, P.2    Seksik, P.3    Dore, J.4    Marteau, P.5
  • 62
    • 84855923925 scopus 로고    scopus 로고
    • Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers
    • 10.1038/ismej.2011.109, 3260502, 21850056
    • Wang T, Cai G, Qiu Y, Fei N, Zhang M, Pang X, Jia W, Cai S, Zhao L. Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers. ISME J 2012, 6:320-329. 10.1038/ismej.2011.109, 3260502, 21850056.
    • (2012) ISME J , vol.6 , pp. 320-329
    • Wang, T.1    Cai, G.2    Qiu, Y.3    Fei, N.4    Zhang, M.5    Pang, X.6    Jia, W.7    Cai, S.8    Zhao, L.9
  • 63
    • 0029084396 scopus 로고
    • Intestinal floras of populations that have a high risk of colon cancer
    • 167598, 7574628
    • Moore WE, Moore LH. Intestinal floras of populations that have a high risk of colon cancer. Appl Environ Microbiol 1995, 61:3202-3207. 167598, 7574628.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 3202-3207
    • Moore, W.E.1    Moore, L.H.2
  • 64
    • 77954821323 scopus 로고    scopus 로고
    • Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas
    • 10.4161/gmic.1.3.12360, 2927011,2927011, 20740058
    • Shen XJ, Rawls JF, Randall T, Burcal L, Mpande CN, Jenkins N, Jovov B, Abdo Z, Sandler RS, Keku TO. Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas. Gut Microbes 2010, 1:138-147. 10.4161/gmic.1.3.12360, 2927011,2927011, 20740058.
    • (2010) Gut Microbes , vol.1 , pp. 138-147
    • Shen, X.J.1    Rawls, J.F.2    Randall, T.3    Burcal, L.4    Mpande, C.N.5    Jenkins, N.6    Jovov, B.7    Abdo, Z.8    Sandler, R.S.9    Keku, T.O.10


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