Identification of the paternal parent of 'Bing' sweet cherry and confirmation of descendants using single nucleotide polymorphism markers

Journal of the American Society for Horticultural Science

Volumn 139, Issue 2, 2014, Pages 148-156

  Rosyara, Umesh R ^a   Sebolt, Audrey M ^a   Peace, Cameron ^b   Iezzoni, Amy F ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

Coefficient of parentage; Inbreeding; Paternity test; Pedigree reconstruction; Prunus avium; Relatedness; Single nucleotide polymorphism; SNP array

Indexed keywords

EID: 84896322464     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.139.2.148     Document Type: Article

References (18)

1. Bink, M.C.A.M., M.P. Boer, C.J.F. ter Braak, J. Jansen, R.E. Voorrips, and W.E. van de Weg. 2008. Bayesian analysis of complex traits in pedigreed plant populations. Euphytica 161:85-96.
2. Bink, M.C.A.M., L.R. Totir, C.J.F. ter Braak, C.R. Winkler, M.P. Boer, and O.S. Smith. 2012. QTL linkage analysis of connected populations using ancestral marker and pedigree information. Theor. Appl. Genet. 124:1097-1113.
3. Blouin, M.S. 2003. DNA-based methods for pedigree reconstruction and kinship analysis in natural populations. Trends Ecol. Evol. 18:503-511.
4. Bowers, J., J.-M. Boursiquot, P. This, K. Chu, H. Johansson, and C. Meredith. 1999. Historical genetics: The parentage of Chardonnay, Gamay, and other wine grapes of northeastern France. Science 285:1562-1565.
5. Choi, C. and F. Kappel. 2004. Inbreeding, coancestry, and founding clones of sweet cherry from North America. J. Amer. Soc. Hort. Sci. 129:535-543.
6. De la Rosa, R., A. Belaj, A. Munoz-Merida, O. Trelles, I. Ortiz-Martin, J.J. Gonzalez-Plaza, V. Valpuesta, and C.R. Beuzon. 2013. Development of EST-derived SSR markers with long-core repeat in olive and their use for paternity testing. J. Amer. Soc. Hort. Sci. 138:290-296.
7. De la Rosa, R., C.M. James, and K.R. Tobutt. 2004. Using microsatellites for paternity testing in olive progenies. HortScience 39: 351-354.
8. Elston, R.C. 1986. Probability and paternity testing. Amer. J. Hum. Genet. 39:112-122.
9. Evett, I.W. and B.S. Weir. 1998. Interpreting DNA evidence: Statistical genetics for forensic scientists. Sinauer Associates, Sunderland, MA.
10. Fries, R. and G. Durstewitz. 2001. Digital DNA signatures for animal tagging. Nat. Biotechnol. 19:508.
11. Haldar, S., S. Haedinges, D. Edge-Garza, N. Oraguzie, J. Olmstead, A. Iezzoni, and C. Peace. 2010. Applying genetic markers for selffertility in the WSU sweet cherry breeding program. Acta Hort. 859:375-380.
12. Harada, T., K. Matsukawa, T. Sato, R. Ishikawa, M. Niizeki, and K. Saito. 1993. DNA-RAPDs detect genetic variation and paternity in Malus. Euphytica 65:87-91.
13. Hedrick, U.P. 1915. The cherries of New York. New York Agr. Expt. Sta., Geneva, NY.
14. Iezzoni, A., H. Schmidt, and A. Albertini. 1990. Cherries (Prunus spp.), p. 110-173. In: Moore, J.N. (ed.). Genetic resources for temperate fruit and nut crops, Intl. Soc. Hort. Sci., Wageningen, The Netherlands.
15. Iezzoni, A.F., R.L. Andersen, H. Schmidt, R. Tao, K.R. Tobutt, and P.A. Wiersma. 2005. Proceedings of the S-allele workshop at the 2001 International Cherry Symposium. Acta Hort. 667:25-35.
16. Kempthorne, O. 1957. An introduction to genetic statistics. Wiley, New York, NY.
17. Konovalov, D.A. and D. Heg. 2008. A maximum-likelihood relatedness estimator allowing for negative relatedness values. Mol. Ecol. Resources 8:256-263.
18. Konovalov, D.A., C. Manning, and M.T. Henshaw. 2004. KINGROUP: A program for pedigree relationship reconstruction and kin group assignments using genetic markers. Mol. Ecol. Notes 4:779-782.