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Volumn 28, Issue 2, 2014, Pages 446-455

Use of ancient sedimentary DNA as a novel conservation tool for high-altitude tropical biodiversity

Author keywords

Albertine Rift; High elevation biodiversity; Lake sediment; Metabarcoding; SedaDNA; Vascular plants; Virunga volcanoes

Indexed keywords

ALPINE ENVIRONMENT; ALTITUDE; ANTHROPOGENIC EFFECT; BIODIVERSITY; CONSERVATION PLANNING; CRATER; ECOZONE; ELEVATION; LACUSTRINE DEPOSIT; MITOCHONDRIAL DNA; PALEOECOLOGY; PROVENANCE; RECONSTRUCTION; RESTORATION ECOLOGY; SEDIMENT CORE; TAXONOMY; TROPICAL REGION; UPLAND REGION; VEGETATION DYNAMICS;

EID: 84896313907     PISSN: 08888892     EISSN: 15231739     Source Type: Journal    
DOI: 10.1111/cobi.12195     Document Type: Article
Times cited : (76)

References (53)
  • 1
    • 0002219388 scopus 로고
    • Characterization of peat and lake deposits
    • B. E. Berglund, editor Wiley, New York.
    • Aaby, B., and B. E. Berglund. 1986. Characterization of peat and lake deposits. Pages 231-246 in B. E. Berglund, editor. Handbook of Holocene palaeoecology and paleohydrology. Wiley, New York.
    • (1986) Handbook of Holocene palaeoecology and paleohydrology , pp. 231-246
    • Aaby, B.1    Berglund, B.E.2
  • 3
    • 84875893142 scopus 로고    scopus 로고
    • Fungal paleodiversity revealed using high-throughput metabarcoding of ancient DNA from Arctic permafrost
    • DOI: 10.1111/1462-2920.12020.
    • Bellemain, E., et al. 2013. Fungal paleodiversity revealed using high-throughput metabarcoding of ancient DNA from Arctic permafrost. Environmental Microbiology 15:1176-1189. DOI: 10.1111/1462-2920.12020.
    • (2013) Environmental Microbiology , vol.15 , pp. 1176-1189
    • Bellemain, E.1
  • 4
    • 0033879603 scopus 로고    scopus 로고
    • Future uses of pollen analysis must include plant macrofossils
    • Birks, H. H., and H. J. B. Birks. 2000. Future uses of pollen analysis must include plant macrofossils. Journal of Biogeography 27:31-35.
    • (2000) Journal of Biogeography , vol.27 , pp. 31-35
    • Birks, H.H.1    Birks, H.J.B.2
  • 7
    • 78650053507 scopus 로고    scopus 로고
    • Potential impacts of climate change on the environmental services of humid tropical alpine regions
    • Buytaert, W., F. Cuesta-Camacho, and C. Tobón. 2011. Potential impacts of climate change on the environmental services of humid tropical alpine regions. Global Ecology and Biogeography 20:19-33.
    • (2011) Global Ecology and Biogeography , vol.20 , pp. 19-33
    • Buytaert, W.1    Cuesta-Camacho, F.2    Tobón, C.3
  • 8
    • 0012561773 scopus 로고    scopus 로고
    • Wetlands of East Africa: biodiversity, exploitation and policy perspectives
    • B. Gopal, W. J. Junk, and J. A. Davies, editors Backhuys Publishers, Lieden, The Netherlands.
    • Chapman, L. J., J. Balirwa, F. W. B. Bugenyi, C. Chapman, and T. L. Crisman. 2001. Wetlands of East Africa: biodiversity, exploitation and policy perspectives. Pages 101-131 in B. Gopal, W. J. Junk, and J. A. Davies, editors. Biodiversity in wetlands: assessment, function and conservation. Backhuys Publishers, Lieden, The Netherlands.
    • (2001) Biodiversity in wetlands: assessment, function and conservation , pp. 101-131
    • Chapman, L.J.1    Balirwa, J.2    Bugenyi, F.W.B.3    Chapman, C.4    Crisman, T.L.5
  • 9
    • 79955671022 scopus 로고    scopus 로고
    • When is an invasive not an invasive? Macrofossil evidence of doubtful native plant species in the Galapagos Islands
    • Coffey, E. E. D., C. A. Froyd, and K. J. Willis. 2011. When is an invasive not an invasive? Macrofossil evidence of doubtful native plant species in the Galapagos Islands. Ecology 92:805-812.
    • (2011) Ecology , vol.92 , pp. 805-812
    • Coffey, E.E.D.1    Froyd, C.A.2    Willis, K.J.3
  • 10
    • 53749094032 scopus 로고    scopus 로고
    • Global warming, elevational range shifts, and lowland biotic attrition in the wet tropics
    • Colwell, R. K., G. Brehm, C. L. Cardelús, A. C. Gilman, and J. T. Longino. 2008. Global warming, elevational range shifts, and lowland biotic attrition in the wet tropics. Science 322:258-261.
    • (2008) Science , vol.322 , pp. 258-261
    • Colwell, R.K.1    Brehm, G.2    Cardelús, C.L.3    Gilman, A.C.4    Longino, J.T.5
  • 11
    • 0037011961 scopus 로고    scopus 로고
    • Geology of mankind
    • Crutzen, P. J. 2002. Geology of mankind. Nature 415:23.
    • (2002) Nature , vol.415 , pp. 23
    • Crutzen, P.J.1
  • 12
    • 84869814167 scopus 로고    scopus 로고
    • Why do tropical mountains support exceptionally high biodiversity? The Eastern Arc mountains and the drivers of Saintpaulia diversity
    • DOI:10.1371/journal.pone.0048908.
    • Dimitrov, D., D. Nogués-Bravo, and N. Scharff. 2012. Why do tropical mountains support exceptionally high biodiversity? The Eastern Arc mountains and the drivers of Saintpaulia diversity. Public Library of Science ONE 7:e48908. DOI:10.1371/journal.pone.0048908.
    • (2012) Public Library of Science ONE , vol.7
    • Dimitrov, D.1    Nogués-Bravo, D.2    Scharff, N.3
  • 13
    • 77952671763 scopus 로고    scopus 로고
    • Historical genetics on a sediment core from a Kenyan lake: intraspecific genotype turnover in a tropical rotifer is related to past environmental changes
    • Epp, L. S., K. R. Stoof, M. H. Trauth, and R. Tiedemann. 2010. Historical genetics on a sediment core from a Kenyan lake: intraspecific genotype turnover in a tropical rotifer is related to past environmental changes. Journal of Paleolimnology 43:939-954.
    • (2010) Journal of Paleolimnology , vol.43 , pp. 939-954
    • Epp, L.S.1    Stoof, K.R.2    Trauth, M.H.3    Tiedemann, R.4
  • 15
    • 84856272979 scopus 로고    scopus 로고
    • How threatened are alpine environments? A cross taxonomic study
    • Franzen, M., and M. Molander. 2012. How threatened are alpine environments? A cross taxonomic study. Biodiversity and Conservation 21:517-526.
    • (2012) Biodiversity and Conservation , vol.21 , pp. 517-526
    • Franzen, M.1    Molander, M.2
  • 17
    • 84857602027 scopus 로고    scopus 로고
    • Patterns and perceptions of climate change in a biodiversity conservation hotspot
    • DOI:10.1371/journal.pone.0032408.
    • Hartter, J., M. D. Stampone, S. J. Ryan, K. Kirner, C. A. Chapman, and A. Goldman. 2012. Patterns and perceptions of climate change in a biodiversity conservation hotspot. Public Library of Science ONE 7:e32408. DOI:10.1371/journal.pone.0032408.
    • (2012) Public Library of Science ONE , vol.7
    • Hartter, J.1    Stampone, M.D.2    Ryan, S.J.3    Kirner, K.4    Chapman, C.A.5    Goldman, A.6
  • 18
    • 80052594093 scopus 로고    scopus 로고
    • Restoring remote ecosystems
    • Higgs, E. S., and W. M. Roush. 2011. Restoring remote ecosystems. Restoration Ecology 19:553-558.
    • (2011) Restoration Ecology , vol.19 , pp. 553-558
    • Higgs, E.S.1    Roush, W.M.2
  • 20
    • 34948842866 scopus 로고    scopus 로고
    • Accuracy and quality of massively parallel DNA pyrosequencing
    • DOI:10.1186/gb-2007-8-7-r143.
    • Huse, S., J. Huber, H. Morrison, M. Sogin, and D. Welch. 2007. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biology 8:R143. DOI:10.1186/gb-2007-8-7-r143.
    • (2007) Genome Biology , vol.8
    • Huse, S.1    Huber, J.2    Morrison, H.3    Sogin, M.4    Welch, D.5
  • 21
    • 84859596016 scopus 로고    scopus 로고
    • A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability
    • Jørgensen, T., et al. 2012a. A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability. Molecular Ecology 21:1989-2003.
    • (2012) Molecular Ecology , vol.21 , pp. 1989-2003
    • Jørgensen, T.1
  • 22
    • 84859603942 scopus 로고    scopus 로고
    • Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA meta-barcoding
    • Jørgensen, T., et al. 2012b. Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA meta-barcoding. Molecular Ecology 21:1980-1988.
    • (2012) Molecular Ecology , vol.21 , pp. 1980-1988
    • Jørgensen, T.1
  • 23
    • 0036947754 scopus 로고    scopus 로고
    • Long-term environmental trends and the future of tropical wetlands
    • Junk, W. J. 2002. Long-term environmental trends and the future of tropical wetlands. Environmental Conservation 29:414-435.
    • (2002) Environmental Conservation , vol.29 , pp. 414-435
    • Junk, W.J.1
  • 24
    • 19944427467 scopus 로고    scopus 로고
    • Africa's hotspots of biodiversity redefined
    • Küper, W., et al. 2004. Africa's hotspots of biodiversity redefined. Annals of the Missouri Botanical Garden 91:525-535.
    • (2004) Annals of the Missouri Botanical Garden , vol.91 , pp. 525-535
    • Küper, W.1
  • 27
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl, T. 1993. Instability and decay of the primary structure of DNA. Nature 362:709-715.
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 28
    • 1842815211 scopus 로고    scopus 로고
    • Defining conservation strategies with historical perspectives: a case study from a degraded oak grassland ecosystem
    • MacDougall, A. S., B. R. Beckwith, and C. Y. Maslovat. 2004. Defining conservation strategies with historical perspectives: a case study from a degraded oak grassland ecosystem. Conservation Biology 18:455-465.
    • (2004) Conservation Biology , vol.18 , pp. 455-465
    • MacDougall, A.S.1    Beckwith, B.R.2    Maslovat, C.Y.3
  • 29
    • 79952460778 scopus 로고    scopus 로고
    • A review of the relative merits of conserving, using, or draining papyrus swamps
    • Maclean, I. M. D., R. R. Boar, and C. Lugo. 2011. A review of the relative merits of conserving, using, or draining papyrus swamps. Environmental Management 47:218-229.
    • (2011) Environmental Management , vol.47 , pp. 218-229
    • Maclean, I.M.D.1    Boar, R.R.2    Lugo, C.3
  • 30
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies, M., et al. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1
  • 31
    • 84871898577 scopus 로고    scopus 로고
    • Palaeoecological evidence for Holocene environmental change from the Virunga volcanoes in the Albertine Rift, central Africa
    • McGlynn, G., S. Mooney, and D. Taylor. 2013. Palaeoecological evidence for Holocene environmental change from the Virunga volcanoes in the Albertine Rift, central Africa. Quaternary Science Reviews 61:32-46.
    • (2013) Quaternary Science Reviews , vol.61 , pp. 32-46
    • McGlynn, G.1    Mooney, S.2    Taylor, D.3
  • 32
    • 84868712798 scopus 로고    scopus 로고
    • Emerging perspectives in the restoration of biodiversity-based ecosystem services
    • Montoya, D., L. Rogers, and J. Memmott. 2012. Emerging perspectives in the restoration of biodiversity-based ecosystem services. Trends in Ecology & Evolution 27:666-672.
    • (2012) Trends in Ecology & Evolution , vol.27 , pp. 666-672
    • Montoya, D.1    Rogers, L.2    Memmott, J.3
  • 33
    • 84868658862 scopus 로고    scopus 로고
    • High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens
    • Murray, D. C., et al. 2012. High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens. Quaternary Science Reviews 58:135-145.
    • (2012) Quaternary Science Reviews , vol.58 , pp. 135-145
    • Murray, D.C.1
  • 35
    • 24944484242 scopus 로고    scopus 로고
    • Ancient DNA from pollen: a genetic record of population history in Scots pine
    • Parducci, L., Y. Suyama, M. Lascoux, and K. D. Bennett. 2005. Ancient DNA from pollen: a genetic record of population history in Scots pine. Molecular Ecology 14:2873-2882.
    • (2005) Molecular Ecology , vol.14 , pp. 2873-2882
    • Parducci, L.1    Suyama, Y.2    Lascoux, M.3    Bennett, K.D.4
  • 36
    • 84857678741 scopus 로고    scopus 로고
    • Glacial survival of boreal trees in northern Scandinavia
    • Parducci, L., et al. 2012. Glacial survival of boreal trees in northern Scandinavia. Science 335:1083-1086.
    • (2012) Science , vol.335 , pp. 1083-1086
    • Parducci, L.1
  • 38
    • 33751313524 scopus 로고    scopus 로고
    • The biodiversity of the Albertine rift
    • Plumptre, A. J., et al. 2007a. The biodiversity of the Albertine rift. Biological Conservation 134:178-194.
    • (2007) Biological Conservation , vol.134 , pp. 178-194
    • Plumptre, A.J.1
  • 39
    • 33751331672 scopus 로고    scopus 로고
    • Transboundary conservation in the Greater Virunga Landscape: its importance for landscape species
    • Plumptre, A. J., D. Kujirakwinja, A. Treves, I. Owiunji, and H. Rainer. 2007b. Transboundary conservation in the Greater Virunga Landscape: its importance for landscape species. Biological Conservation 134:279-287.
    • (2007) Biological Conservation , vol.134 , pp. 279-287
    • Plumptre, A.J.1    Kujirakwinja, D.2    Treves, A.3    Owiunji, I.4    Rainer, H.5
  • 40
    • 79958093991 scopus 로고    scopus 로고
    • Extreme conservation leads to recovery of the Virunga mountain gorillas
    • DOI:10.1371/journal.pone.0019788.
    • Robbins, M. M., et al. 2011. Extreme conservation leads to recovery of the Virunga mountain gorillas. Public Library of Science ONE 6:e19788. DOI:10.1371/journal.pone.0019788.
    • (2011) Public Library of Science ONE , vol.6
    • Robbins, M.M.1
  • 41
    • 84872600063 scopus 로고    scopus 로고
    • Challenges in using siliceous subfossils as a tool for inferring past water level and hydroperiod in Everglades marshes
    • Sanchez, C., E. E. Gaiser, C. J. Saunders, A. H. Wachnicka, N. Oehm, and C. Craft. 2013. Challenges in using siliceous subfossils as a tool for inferring past water level and hydroperiod in Everglades marshes. Journal of Paleolimnology 49:45-66.
    • (2013) Journal of Paleolimnology , vol.49 , pp. 45-66
    • Sanchez, C.1    Gaiser, E.E.2    Saunders, C.J.3    Wachnicka, A.H.4    Oehm, N.5    Craft, C.6
  • 42
    • 0346431881 scopus 로고    scopus 로고
    • Quaternary pollen analysis: recent progress in palaeoecology and palaeoclimatology
    • Seppä, H., and K. D. Bennett. 2003. Quaternary pollen analysis: recent progress in palaeoecology and palaeoclimatology. Progress in Physical Geography 27:548-579.
    • (2003) Progress in Physical Geography , vol.27 , pp. 548-579
    • Seppä, H.1    Bennett, K.D.2
  • 44
    • 78650499408 scopus 로고    scopus 로고
    • Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate
    • Sønstebø, J. H., et al. 2010. Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate. Molecular Ecology Resources 10:1009-1018.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 1009-1018
    • Sønstebø, J.H.1
  • 45
    • 84859576222 scopus 로고    scopus 로고
    • Hidden diversity in diatoms of Kenyan Lake Naivasha: a genetic approach detects temporal variation
    • Stoof-Leichsenring, K. R., L. S. Epp, M. H. Trauth, and R. Tiedemann. 2012. Hidden diversity in diatoms of Kenyan Lake Naivasha: a genetic approach detects temporal variation. Molecular Ecology 21:1918-1930.
    • (2012) Molecular Ecology , vol.21 , pp. 1918-1930
    • Stoof-Leichsenring, K.R.1    Epp, L.S.2    Trauth, M.H.3    Tiedemann, R.4
  • 47
    • 0001955738 scopus 로고
    • Karakterisering af løse jordarter (characterization of unconsolidated sediments)
    • Series IV
    • Troels-Smith, J. 1955. Karakterisering af løse jordarter (characterization of unconsolidated sediments). Danmarks Geologiske Underøgelse Series IV. 3(10):73 pp.
    • (1955) Danmarks Geologiske Underøgelse , vol.3 , Issue.10 , pp. 73
    • Troels-Smith, J.1
  • 49
    • 1242299736 scopus 로고    scopus 로고
    • Isolation of nucleic acids and cultures from fossil ice and permafrost
    • Willerslev, E., A. J. Hansen, and H. N. Poinar. 2004. Isolation of nucleic acids and cultures from fossil ice and permafrost. Trends in Ecology & Evolution 19:141-147.
    • (2004) Trends in Ecology & Evolution , vol.19 , pp. 141-147
    • Willerslev, E.1    Hansen, A.J.2    Poinar, H.N.3
  • 51
    • 34447337482 scopus 로고    scopus 로고
    • Ancient biomolecules from deap ice cores reveal a forested southern Greenland
    • Willerslev, E., et al. 2007. Ancient biomolecules from deap ice cores reveal a forested southern Greenland. Science 317:111-114.
    • (2007) Science , vol.317 , pp. 111-114
    • Willerslev, E.1
  • 52
    • 33751567545 scopus 로고    scopus 로고
    • What is natural? The need for a long-term perspective in biodiversity conservation
    • Willis, K. J., and H. J. B. Birks. 2006. What is natural? The need for a long-term perspective in biodiversity conservation. Science 314:1261-1265.
    • (2006) Science , vol.314 , pp. 1261-1265
    • Willis, K.J.1    Birks, H.J.B.2
  • 53
    • 84864289492 scopus 로고    scopus 로고
    • DNA from soil mirrors plant taxonomic and growth form diversity
    • Yoccoz, N. G., et al. 2012. DNA from soil mirrors plant taxonomic and growth form diversity. Molecular Ecology 21:3647-3655.
    • (2012) Molecular Ecology , vol.21 , pp. 3647-3655
    • Yoccoz, N.G.1


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