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Volumn 226, Issue 2, 2014, Pages 140-149

Genome-wide miRNA-profiling of aflatoxin B1-induced hepatic injury using deep sequencing

Author keywords

Aflatoxin B1; Hepatocellular carcinoma; High throughput sequencing; MicroRNA

Indexed keywords

AFLATOXIN B1; MICRORNA; MICRORNA 122; MICRORNA 140; MICRORNA 151; MICRORNA 203; MICRORNA 221; MICRORNA 28; MICRORNA 338; MICRORNA 34A; MICRORNA 423; MICRORNA 92A; PROTEIN P53; UNCLASSIFIED DRUG;

EID: 84896047509     PISSN: 03784274     EISSN: 18793169     Source Type: Journal    
DOI: 10.1016/j.toxlet.2014.01.021     Document Type: Article
Times cited : (29)

References (39)
  • 1
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • Allen E., Xie Z. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 2005, 121:207-221.
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2
  • 2
    • 80052945113 scopus 로고    scopus 로고
    • Role of AFB1 as a risk for primary liver cancer in north Indian population
    • Asim M., Sarma M.P., Thayumanavan L., Kar P. Role of AFB1 as a risk for primary liver cancer in north Indian population. ClinBiochem 2011, 44:1235-1240.
    • (2011) ClinBiochem , vol.44 , pp. 1235-1240
    • Asim, M.1    Sarma, M.P.2    Thayumanavan, L.3    Kar, P.4
  • 3
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 4
    • 18744396337 scopus 로고    scopus 로고
    • Frequent deletions and down-regulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia
    • Calin G.A., Dumitru C.D., Shimizu M., Bichi R., Zupo S., Noch E., et al. Frequent deletions and down-regulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:15524-15529.
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 15524-15529
    • Calin, G.A.1    Dumitru, C.D.2    Shimizu, M.3    Bichi, R.4    Zupo, S.5    Noch, E.6
  • 5
    • 29144470346 scopus 로고    scopus 로고
    • Real-time quantification of microRNAs bystem-loop RT-PCR
    • Chen C., Ridzon D.A., Broomer A.J. Real-time quantification of microRNAs bystem-loop RT-PCR. Nucleic Acids Res. 2005, 33:179.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 179
    • Chen, C.1    Ridzon, D.A.2    Broomer, A.J.3
  • 7
    • 0006061295 scopus 로고
    • Identification of the principal aflatoxin B1-DNA adduct formed in vivo in rat liver
    • Croy R.G., Essigmann J.M., Reinhold V.N., Wogan G.N. Identification of the principal aflatoxin B1-DNA adduct formed in vivo in rat liver. PNAS 1978, 75:1745-1749.
    • (1978) PNAS , vol.75 , pp. 1745-1749
    • Croy, R.G.1    Essigmann, J.M.2    Reinhold, V.N.3    Wogan, G.N.4
  • 8
    • 79959913677 scopus 로고    scopus 로고
    • MicroRNA sequence and expression analysis in breast tumors by deep sequencing
    • Farazi T.A., Horlings H.M., Ten Hoeve J.J. MicroRNA sequence and expression analysis in breast tumors by deep sequencing. Cancer Res. 2011, 71:4443-4453.
    • (2011) Cancer Res. , vol.71 , pp. 4443-4453
    • Farazi, T.A.1    Horlings, H.M.2    Ten Hoeve, J.J.3
  • 9
    • 77952299722 scopus 로고    scopus 로고
    • MiR-124 and miR-203 are epigenetically silenced tumor-suppressive microRNAs in hepatocellular carcinoma
    • Furuta M., Kozaki K.I., Tanaka S., Arii S., Imoto I., Inazawa J. miR-124 and miR-203 are epigenetically silenced tumor-suppressive microRNAs in hepatocellular carcinoma. Carcinogenesis 2010, 31:766-776.
    • (2010) Carcinogenesis , vol.31 , pp. 766-776
    • Furuta, M.1    Kozaki, K.I.2    Tanaka, S.3    Arii, S.4    Imoto, I.5    Inazawa, J.6
  • 10
    • 0031431376 scopus 로고    scopus 로고
    • P53 protein expression by hepatocarcinogens in the rat liver andits potential role in mitoinhibition of normal hepatocytes as amechanism of hepatic tumour promotion
    • Gijssel H.E., Maassen C.B., Mulde G.J., Meerman J.H. p53 protein expression by hepatocarcinogens in the rat liver andits potential role in mitoinhibition of normal hepatocytes as amechanism of hepatic tumour promotion. Carcinogenesis 1997, 18:1027-1033.
    • (1997) Carcinogenesis , vol.18 , pp. 1027-1033
    • Gijssel, H.E.1    Maassen, C.B.2    Mulde, G.J.3    Meerman, J.H.4
  • 11
    • 34447117003 scopus 로고    scopus 로고
    • Cyclin G1 is a target of miR-122a, a MicroRNA frequently down-regulated in human hepatocellular carcinoma
    • Gramantieri L., Ferracin M., Fornari F. Cyclin G1 is a target of miR-122a, a MicroRNA frequently down-regulated in human hepatocellular carcinoma. Cancer Res. 2007, 67:6092-6099.
    • (2007) Cancer Res. , vol.67 , pp. 6092-6099
    • Gramantieri, L.1    Ferracin, M.2    Fornari, F.3
  • 12
    • 69349083676 scopus 로고    scopus 로고
    • MicroRNA-221 targets Bmf in hepatocellular carcinoma and correlates with tumor multifocality
    • Gramantieri L., Fornari F., Ferracin M. microRNA-221 targets Bmf in hepatocellular carcinoma and correlates with tumor multifocality. Clin. Cancer Res. 2009, 15:5073-5081.
    • (2009) Clin. Cancer Res. , vol.15 , pp. 5073-5081
    • Gramantieri, L.1    Fornari, F.2    Ferracin, M.3
  • 13
    • 33947271964 scopus 로고    scopus 로고
    • MiRNA editing-we should have inosine this coming
    • Habig J.W., Dale T., Bass B.L. miRNA editing-we should have inosine this coming. Mol. Cell. 2007, 25:792-793.
    • (2007) Mol. Cell. , vol.25 , pp. 792-793
    • Habig, J.W.1    Dale, T.2    Bass, B.L.3
  • 14
    • 27544495514 scopus 로고    scopus 로고
    • A polycistronic microRNA cluster, miR-17-92, is proliferation overexpressed in human lung cancers and enhances cell proliferation
    • Hayashita Y., Osada H., Tatematsu Y. A polycistronic microRNA cluster, miR-17-92, is proliferation overexpressed in human lung cancers and enhances cell proliferation. Cancer Res. 2005, 65:9628-9632.
    • (2005) Cancer Res. , vol.65 , pp. 9628-9632
    • Hayashita, Y.1    Osada, H.2    Tatematsu, Y.3
  • 15
    • 37249006781 scopus 로고    scopus 로고
    • Microarray analysis of microRNA expression in hepatocellular carcinoma and non-tumorous tissues without viral hepatitis
    • Huang Y.S., Dai Y., Yu X.F., Bao S.Y., Yin Y.B., Tang M., Hu C.X. Microarray analysis of microRNA expression in hepatocellular carcinoma and non-tumorous tissues without viral hepatitis. J. Gastroentrol. Hepatol. 2008, 23:87-94.
    • (2008) J. Gastroentrol. Hepatol. , vol.23 , pp. 87-94
    • Huang, Y.S.1    Dai, Y.2    Yu, X.F.3    Bao, S.Y.4    Yin, Y.B.5    Tang, M.6    Hu, C.X.7
  • 16
    • 68349160639 scopus 로고    scopus 로고
    • Bead-based microarray analysis of microRNA expression inhepatocellular carcinoma: miR-338 is downregulated
    • Huang X.H., Wang Q., Chen J.S. Bead-based microarray analysis of microRNA expression inhepatocellular carcinoma: miR-338 is downregulated. Hepato Res. 2009, 39:786-794.
    • (2009) Hepato Res. , vol.39 , pp. 786-794
    • Huang, X.H.1    Wang, Q.2    Chen, J.S.3
  • 17
    • 46249083024 scopus 로고    scopus 로고
    • MicroRNA profiling in hepatocellular tumors is associated with clinical features and oncogene/tumor suppressor gene mutations
    • Ladeiro Y., Couchy G., Balabaud C., Bioulac S.P., Pelletier L., Rebouissou S., Zucman R.J. MicroRNA profiling in hepatocellular tumors is associated with clinical features and oncogene/tumor suppressor gene mutations. Hepatology 2008, 47:1955-1963.
    • (2008) Hepatology , vol.47 , pp. 1955-1963
    • Ladeiro, Y.1    Couchy, G.2    Balabaud, C.3    Bioulac, S.P.4    Pelletier, L.5    Rebouissou, S.6    Zucman, R.J.7
  • 18
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis B.P., Burge C.B., Bartel D.P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120:15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 19
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li R., Li Y., Kristiansen K., Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics 2008, 24:713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 20
    • 77953237514 scopus 로고    scopus 로고
    • Global burden of aflatoxin-induced hepatocellular carcinoma: a risk assessment
    • Liu Y., Wu F. Global burden of aflatoxin-induced hepatocellular carcinoma: a risk assessment. Environ. Health Perspect. 2010, 118:818-824.
    • (2010) Environ. Health Perspect. , vol.118 , pp. 818-824
    • Liu, Y.1    Wu, F.2
  • 21
    • 79751473114 scopus 로고    scopus 로고
    • The microRNA miR-34a inhibits prostate cancer stem cells and metastasis by directly repressing CD44
    • Liu C., Kelnar K., Liu B. The microRNA miR-34a inhibits prostate cancer stem cells and metastasis by directly repressing CD44. Nat. Med. 2011, 17:211-215.
    • (2011) Nat. Med. , vol.17 , pp. 211-215
    • Liu, C.1    Kelnar, K.2    Liu, B.3
  • 22
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Method 2001, 25:402-408.
    • (2001) Method , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 23
    • 41949102707 scopus 로고    scopus 로고
    • MiRiad roles for the miR-17-92 cluster in development and disease
    • Mendell J.T. miRiad roles for the miR-17-92 cluster in development and disease. Cell 2008, 133:217-222.
    • (2008) Cell , vol.133 , pp. 217-222
    • Mendell, J.T.1
  • 25
    • 33646157967 scopus 로고    scopus 로고
    • Comprehensive analysis of microRNA expression patterns in hepatocellular carcinoma and non-tumorous tissues
    • Murakami Y., Yasuda T., Saigo K., Urashima T., Toyoda H., Okanoue T., Shimotohno K. Comprehensive analysis of microRNA expression patterns in hepatocellular carcinoma and non-tumorous tissues. Oncogene 2006, 25:2537-2545.
    • (2006) Oncogene , vol.25 , pp. 2537-2545
    • Murakami, Y.1    Yasuda, T.2    Saigo, K.3    Urashima, T.4    Toyoda, H.5    Okanoue, T.6    Shimotohno, K.7
  • 26
    • 33746361200 scopus 로고    scopus 로고
    • Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
    • Okoniewski M.J., Miller C.J. Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations. BMC Bioinformatics 2006, 7:276.
    • (2006) BMC Bioinformatics , vol.7 , pp. 276
    • Okoniewski, M.J.1    Miller, C.J.2
  • 27
    • 0025748539 scopus 로고
    • P53 mutation in hepatocellular carcinoma after aflatoxin exposure
    • Ozturk M. p53 mutation in hepatocellular carcinoma after aflatoxin exposure. Lancet 1991, 338:1356-1359.
    • (1991) Lancet , vol.338 , pp. 1356-1359
    • Ozturk, M.1
  • 28
    • 16244398080 scopus 로고    scopus 로고
    • Specific effects of microRNAs on the plant transcriptome
    • Schwab R., Palatnik J.F. Specific effects of microRNAs on the plant transcriptome. Dev. Cell 2005, 8:517-527.
    • (2005) Dev. Cell , vol.8 , pp. 517-527
    • Schwab, R.1    Palatnik, J.F.2
  • 30
    • 80052965983 scopus 로고    scopus 로고
    • MicroRNAs of rat articular cartilage at different developmental stages identified by Solexa sequencing
    • Sun J., Zhong N., Li Q. microRNAs of rat articular cartilage at different developmental stages identified by Solexa sequencing. Osteoarthritis Cartilage 2011, 19:1237-1245.
    • (2011) Osteoarthritis Cartilage , vol.19 , pp. 1237-1245
    • Sun, J.1    Zhong, N.2    Li, Q.3
  • 32
    • 34250868124 scopus 로고    scopus 로고
    • Differential regulation of microRNAs by p53 revealed by massively parallel sequencing: miR-34a is a p53 target that induces apoptosis and G1-arrest
    • Tarasov V., Jung P., Verdoodt B. Differential regulation of microRNAs by p53 revealed by massively parallel sequencing: miR-34a is a p53 target that induces apoptosis and G1-arrest. Cell Cycle 2007, 13:1586-1593.
    • (2007) Cell Cycle , vol.13 , pp. 1586-1593
    • Tarasov, V.1    Jung, P.2    Verdoodt, B.3
  • 33
    • 16544376533 scopus 로고    scopus 로고
    • Human aflatoxicosis in developing countries: a review of toxicology, exposure, potential health consequences, and interventions
    • Williams J.H., Phillips T.D., Jolly P.E., Stiles J.K., Jolly C.M., Aggarwal D. Human aflatoxicosis in developing countries: a review of toxicology, exposure, potential health consequences, and interventions. Am. J. Clin. Nutr. 2004, 80:1106-1122.
    • (2004) Am. J. Clin. Nutr. , vol.80 , pp. 1106-1122
    • Williams, J.H.1    Phillips, T.D.2    Jolly, P.E.3    Stiles, J.K.4    Jolly, C.M.5    Aggarwal, D.6
  • 34
    • 84871493022 scopus 로고    scopus 로고
    • The role of aflatoxins in hepatocellular carcinoma
    • Wu H.C., Santella R. The role of aflatoxins in hepatocellular carcinoma. Hepat. Mon. 2012, 10:e7238.
    • (2012) Hepat. Mon. , vol.10
    • Wu, H.C.1    Santella, R.2
  • 35
    • 39749163245 scopus 로고    scopus 로고
    • Lymphoproliferative disease and autoimmunity in mice with increased miR-17-92 expression in lymphocytes
    • Xiao C., Srinivasan L., Calado D.P. Lymphoproliferative disease and autoimmunity in mice with increased miR-17-92 expression in lymphocytes. Nat. Immunol. 2008, 9:405-414.
    • (2008) Nat. Immunol. , vol.9 , pp. 405-414
    • Xiao, C.1    Srinivasan, L.2    Calado, D.P.3
  • 36
    • 84883202156 scopus 로고    scopus 로고
    • Aflatoxin B1 negatively regulates Wnt/β-Catenin signaling pathway through activating miR-33a
    • Yi F., Youjun F., Tongjin W., et al. Aflatoxin B1 negatively regulates Wnt/β-Catenin signaling pathway through activating miR-33a. PLoS ONE 2013, 8:e73004.
    • (2013) PLoS ONE , vol.8
    • Yi, F.1    Youjun, F.2    Tongjin, W.3
  • 37
    • 33745168962 scopus 로고    scopus 로고
    • MicroRNAs exhibit high frequency genomic alterations in human cancer
    • Zhang L., Huang J., Yang N. microRNAs exhibit high frequency genomic alterations in human cancer. PNAS 2006, 103:9136-9141.
    • (2006) PNAS , vol.103 , pp. 9136-9141
    • Zhang, L.1    Huang, J.2    Yang, N.3
  • 39
    • 79953685152 scopus 로고    scopus 로고
    • The impact of next-generation sequencing on genomics
    • Zhang J., Chiodini R., Badr A., Zhang G. The impact of next-generation sequencing on genomics. J. Genet. Genomics 2011, 38:95-109.
    • (2011) J. Genet. Genomics , vol.38 , pp. 95-109
    • Zhang, J.1    Chiodini, R.2    Badr, A.3    Zhang, G.4


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