메뉴 건너뛰기




Volumn 37, Issue 2, 2014, Pages 256-267

Genomic characterization of interferon regulatory factor 5 from rock bream (Oplegnathus fasciatus) and its role in antiviral defense

Author keywords

Genomic structure; Immune challenge; Interferon regulatory factor 5; Promoter prediction; Transcriptional analysis

Indexed keywords

COMPLEMENTARY DNA; FISH PROTEIN; INTERFERON REGULATORY FACTOR; MESSENGER RNA; POLYINOSINIC POLYCYTIDYLIC ACID;

EID: 84896041961     PISSN: 10504648     EISSN: 10959947     Source Type: Journal    
DOI: 10.1016/j.fsi.2014.02.002     Document Type: Article
Times cited : (15)

References (41)
  • 3
    • 77953611001 scopus 로고    scopus 로고
    • Regulation and function of interferon regulatory factors of Atlantic salmon
    • Bergan V., Kileng O., Sun B., Robertsen B. Regulation and function of interferon regulatory factors of Atlantic salmon. Mol Immunol 2010, 47:2005-2014.
    • (2010) Mol Immunol , vol.47 , pp. 2005-2014
    • Bergan, V.1    Kileng, O.2    Sun, B.3    Robertsen, B.4
  • 4
    • 77951794488 scopus 로고    scopus 로고
    • Global characterization of interferon regulatory factor (IRF) genes in vertebrates: glimpse of the diversification in evolution
    • Huang B., Qi Z.T., Xu Z., Nie P. Global characterization of interferon regulatory factor (IRF) genes in vertebrates: glimpse of the diversification in evolution. BMC Immunol 2010, 11:22.
    • (2010) BMC Immunol , vol.11 , pp. 22
    • Huang, B.1    Qi, Z.T.2    Xu, Z.3    Nie, P.4
  • 6
    • 0036311933 scopus 로고    scopus 로고
    • Multiple regulatory domains of IRF-5 control activation, cellular localization, and induction of chemokines that mediate recruitment of T lymphocytes
    • Barnes B.J., Kellum M.J., Field A.E., Pitha P.M. Multiple regulatory domains of IRF-5 control activation, cellular localization, and induction of chemokines that mediate recruitment of T lymphocytes. Mol Cell Biol 2002, 22:5721-5740.
    • (2002) Mol Cell Biol , vol.22 , pp. 5721-5740
    • Barnes, B.J.1    Kellum, M.J.2    Field, A.E.3    Pitha, P.M.4
  • 7
    • 0035061538 scopus 로고    scopus 로고
    • IRF family of transcription factors as regulators of host defense
    • Taniguchi T., Ogasawara K., Takaoka A., Tanaka N. IRF family of transcription factors as regulators of host defense. Annu Rev Immunol 2001, 19:623-655.
    • (2001) Annu Rev Immunol , vol.19 , pp. 623-655
    • Taniguchi, T.1    Ogasawara, K.2    Takaoka, A.3    Tanaka, N.4
  • 8
    • 0141919557 scopus 로고    scopus 로고
    • Interferon regulatory factor 5, a novel mediator of cell cycle arrest and cell death
    • Barnes B.J., Kellum M.J., Pinder K.E., Frisancho J.A., Pitha P.M. Interferon regulatory factor 5, a novel mediator of cell cycle arrest and cell death. Cancer Res 2003, 63:6424-6431.
    • (2003) Cancer Res , vol.63 , pp. 6424-6431
    • Barnes, B.J.1    Kellum, M.J.2    Pinder, K.E.3    Frisancho, J.A.4    Pitha, P.M.5
  • 9
    • 34250793069 scopus 로고    scopus 로고
    • The interferon regulatory factor family in host defense: mechanism of action
    • Ozato K., Tailor P., Kubota T. The interferon regulatory factor family in host defense: mechanism of action. JBiol Chem 2007, 282:20065-20069.
    • (2007) JBiol Chem , vol.282 , pp. 20065-20069
    • Ozato, K.1    Tailor, P.2    Kubota, T.3
  • 10
    • 0032538891 scopus 로고    scopus 로고
    • Differential viral induction of distinct interferon-alpha genes by positive feedback through interferon regulatory factor-7
    • Marie I., Durbin J.E., Levy D.E. Differential viral induction of distinct interferon-alpha genes by positive feedback through interferon regulatory factor-7. EMBO J 1998, 17:6660-6669.
    • (1998) EMBO J , vol.17 , pp. 6660-6669
    • Marie, I.1    Durbin, J.E.2    Levy, D.E.3
  • 11
    • 0035968246 scopus 로고    scopus 로고
    • Virus-specific activation of a novel interferon regulatory factor, IRF-5, results in the induction of distinct interferon alpha genes
    • Barnes B.J., Moore P.A., Pitha P.M. Virus-specific activation of a novel interferon regulatory factor, IRF-5, results in the induction of distinct interferon alpha genes. JBiol Chem 2001, 276:23382-23390.
    • (2001) JBiol Chem , vol.276 , pp. 23382-23390
    • Barnes, B.J.1    Moore, P.A.2    Pitha, P.M.3
  • 12
    • 0032582712 scopus 로고    scopus 로고
    • Characterization of the interferon regulatory factor-7 and its potential role in the transcription activation of interferon A genes
    • Au W.C., Moore P.A., LaFleur D.W., Tombal B., Pitha P.M. Characterization of the interferon regulatory factor-7 and its potential role in the transcription activation of interferon A genes. JBiol Chem 1998, 273:29210-29217.
    • (1998) JBiol Chem , vol.273 , pp. 29210-29217
    • Au, W.C.1    Moore, P.A.2    LaFleur, D.W.3    Tombal, B.4    Pitha, P.M.5
  • 13
    • 15044345461 scopus 로고    scopus 로고
    • Integral role of IRF-5 in the gene induction programme activated by toll-like receptors
    • Takaoka A., Yanai H., Kondo S., Duncan G., Negishi H., Mizutani T., et al. Integral role of IRF-5 in the gene induction programme activated by toll-like receptors. Nature 2005, 434:243-249.
    • (2005) Nature , vol.434 , pp. 243-249
    • Takaoka, A.1    Yanai, H.2    Kondo, S.3    Duncan, G.4    Negishi, H.5    Mizutani, T.6
  • 14
    • 77956929655 scopus 로고    scopus 로고
    • Characteristics of the interferon regulatory factor pairs zfIRF5/7 and their stimulation expression by ISKNV infection in zebrafish (Danio rerio)
    • Xiang Z., Dong C., Qi L., Chen W., Huang L., Li Z., et al. Characteristics of the interferon regulatory factor pairs zfIRF5/7 and their stimulation expression by ISKNV infection in zebrafish (Danio rerio). Dev Comp Immunol 2010, 34:1263-1273.
    • (2010) Dev Comp Immunol , vol.34 , pp. 1263-1273
    • Xiang, Z.1    Dong, C.2    Qi, L.3    Chen, W.4    Huang, L.5    Li, Z.6
  • 15
    • 84875065899 scopus 로고    scopus 로고
    • IRF-3, IRF-5, and IRF-7 coordinately regulate the type I IFN response in myeloid dendritic cells downstream of MAVS signaling
    • Lazear H.M., Lancaster A., Wilkins C., Suthar M.S., Huang A., Vick S.C., et al. IRF-3, IRF-5, and IRF-7 coordinately regulate the type I IFN response in myeloid dendritic cells downstream of MAVS signaling. PLoS Pathog 2013, 9:e1003118.
    • (2013) PLoS Pathog , vol.9
    • Lazear, H.M.1    Lancaster, A.2    Wilkins, C.3    Suthar, M.S.4    Huang, A.5    Vick, S.C.6
  • 16
    • 84859232949 scopus 로고    scopus 로고
    • Molecular characterization and expression analysis of interferon regulatory factor 5 (IRF-5) in turbot, Scophthalmus maximus
    • Xia J., Hu G.B., Dong X.Z., Liu Q.M., Zhang S.C. Molecular characterization and expression analysis of interferon regulatory factor 5 (IRF-5) in turbot, Scophthalmus maximus. Fish Shellfish Immunol 2012, 32:211-218.
    • (2012) Fish Shellfish Immunol , vol.32 , pp. 211-218
    • Xia, J.1    Hu, G.B.2    Dong, X.Z.3    Liu, Q.M.4    Zhang, S.C.5
  • 17
    • 80054919788 scopus 로고    scopus 로고
    • Molecular cloning and characterization of interferon regulatory factor 1 (IRF-1), IRF-2 and IRF-5 in the chondrostean paddlefish Polyodon spathula and their phylogenetic importance in the Osteichthyes
    • Xiaoni G., Zhuo C., Xuzhen W., Dengqiang W., Xinwen C. Molecular cloning and characterization of interferon regulatory factor 1 (IRF-1), IRF-2 and IRF-5 in the chondrostean paddlefish Polyodon spathula and their phylogenetic importance in the Osteichthyes. Dev Comp Immunol 2012, 36:74-84.
    • (2012) Dev Comp Immunol , vol.36 , pp. 74-84
    • Xiaoni, G.1    Zhuo, C.2    Xuzhen, W.3    Dengqiang, W.4    Xinwen, C.5
  • 18
    • 77349125585 scopus 로고    scopus 로고
    • The gene and virus-induced expression of IRF-5 in grass carp Ctenopharyngodon idella
    • Xu Q.Q., Chang M.X., Xiao F.S., Huang B., Nie P. The gene and virus-induced expression of IRF-5 in grass carp Ctenopharyngodon idella. Vet Immunol Immunopathol 2010, 134:269-278.
    • (2010) Vet Immunol Immunopathol , vol.134 , pp. 269-278
    • Xu, Q.Q.1    Chang, M.X.2    Xiao, F.S.3    Huang, B.4    Nie, P.5
  • 19
    • 84866158887 scopus 로고    scopus 로고
    • Characteristics of the interferon regulatory factor 5 (IRF5) and its expression in response to LCDV and poly I: C challenges in Japanese flounder, Paralichthys olivaceus
    • Hu G.B., Lou H.M., Dong X.Z., Liu Q.M., Zhang S.C. Characteristics of the interferon regulatory factor 5 (IRF5) and its expression in response to LCDV and poly I: C challenges in Japanese flounder, Paralichthys olivaceus. Dev Comp Immunol 2012, 38:377-382.
    • (2012) Dev Comp Immunol , vol.38 , pp. 377-382
    • Hu, G.B.1    Lou, H.M.2    Dong, X.Z.3    Liu, Q.M.4    Zhang, S.C.5
  • 20
    • 50849142874 scopus 로고    scopus 로고
    • Functional characterization of the RNase III gene of rock bream iridovirus
    • Zenke K., Kim K.H. Functional characterization of the RNase III gene of rock bream iridovirus. Archiv Virol 2008, 153:1651-1656.
    • (2008) Archiv Virol , vol.153 , pp. 1651-1656
    • Zenke, K.1    Kim, K.H.2
  • 21
    • 80052503306 scopus 로고    scopus 로고
    • Characterization and expression analysis of the myeloid differentiation factor 88 (MyD88) in rock bream Oplegnathus fasciatus
    • Whang I., Lee Y., Kim H., Jung S.J., Oh M.J., Choi C.Y., et al. Characterization and expression analysis of the myeloid differentiation factor 88 (MyD88) in rock bream Oplegnathus fasciatus. Mol Biol Rep 2011, 38:3911-3920.
    • (2011) Mol Biol Rep , vol.38 , pp. 3911-3920
    • Whang, I.1    Lee, Y.2    Kim, H.3    Jung, S.J.4    Oh, M.J.5    Choi, C.Y.6
  • 23
    • 0037585294 scopus 로고    scopus 로고
    • Construction and characterization of a BAC library from a gynogenetic channel catfish Ictalurus punctatus
    • Quiniou S.M., Katagiri T., Miller N.W., Wilson M., Wolters W.R., Waldbieser G.C. Construction and characterization of a BAC library from a gynogenetic channel catfish Ictalurus punctatus. Genet Sel Evol 2003, 35:673-683.
    • (2003) Genet Sel Evol , vol.35 , pp. 673-683
    • Quiniou, S.M.1    Katagiri, T.2    Miller, N.W.3    Wilson, M.4    Wolters, W.R.5    Waldbieser, G.C.6
  • 24
  • 25
    • 58149194624 scopus 로고    scopus 로고
    • SMART 6: recent updates and new developments
    • Letunic I., Doerks T., Bork P. SMART 6: recent updates and new developments. Nucleic Acids Res 2009, 37:D229-D232.
    • (2009) Nucleic Acids Res , vol.37
    • Letunic, I.1    Doerks, T.2    Bork, P.3
  • 26
  • 29
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 30
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 31
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
    • Arnold K., Bordoli L., Kopp J., Schwede T. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 2006, 22:195-201.
    • (2006) Bioinformatics , vol.22 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 32
    • 55549138004 scopus 로고    scopus 로고
    • Insights into interferon regulatory factor activation from the crystal structure of dimeric IRF5
    • Chen W., Lam S.S., Srinath H., Jiang Z., Correia J.J., Schiffer C.A., et al. Insights into interferon regulatory factor activation from the crystal structure of dimeric IRF5. Nat Struct Mol Biol 2008, 15:1213-1220.
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 1213-1220
    • Chen, W.1    Lam, S.S.2    Srinath, H.3    Jiang, Z.4    Correia, J.J.5    Schiffer, C.A.6
  • 34
    • 84866745152 scopus 로고    scopus 로고
    • Molecular cloning and functional characterization of two duplicated two-cysteine containing type I interferon genes in rock bream Oplegnathus fasciatus
    • Wan Q., Wicramaarachchi W.D., Whang I., Lim B.S., Oh M.J., Jung S.J., et al. Molecular cloning and functional characterization of two duplicated two-cysteine containing type I interferon genes in rock bream Oplegnathus fasciatus. Fish Shellfish Immunol 2012, 33:886-898.
    • (2012) Fish Shellfish Immunol , vol.33 , pp. 886-898
    • Wan, Q.1    Wicramaarachchi, W.D.2    Whang, I.3    Lim, B.S.4    Oh, M.J.5    Jung, S.J.6
  • 35
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
    • Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 2001, 25:402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 36
    • 0031933646 scopus 로고    scopus 로고
    • Structure of IRF-1 with bound DNA reveals determinants of interferon regulation
    • Escalante C.R., Yie J., Thanos D., Aggarwal A.K. Structure of IRF-1 with bound DNA reveals determinants of interferon regulation. Nature 1998, 391:103-106.
    • (1998) Nature , vol.391 , pp. 103-106
    • Escalante, C.R.1    Yie, J.2    Thanos, D.3    Aggarwal, A.K.4
  • 37
    • 59149091466 scopus 로고    scopus 로고
    • IRF-5 is a mediator of the death receptor-induced apoptotic signaling pathway
    • Hu G., Barnes B.J. IRF-5 is a mediator of the death receptor-induced apoptotic signaling pathway. JBiol Chem 2009, 284:2767-2777.
    • (2009) JBiol Chem , vol.284 , pp. 2767-2777
    • Hu, G.1    Barnes, B.J.2
  • 38
    • 20444380445 scopus 로고    scopus 로고
    • The interferon regulatory factor, IRF5, is a central mediator of toll-like receptor 7 signaling
    • Schoenemeyer A., Barnes B.J., Mancl M.E., Latz E., Goutagny N., Pitha P.M., et al. The interferon regulatory factor, IRF5, is a central mediator of toll-like receptor 7 signaling. JBiol Chem 2005, 280:17005-17012.
    • (2005) JBiol Chem , vol.280 , pp. 17005-17012
    • Schoenemeyer, A.1    Barnes, B.J.2    Mancl, M.E.3    Latz, E.4    Goutagny, N.5    Pitha, P.M.6
  • 39
    • 0038608016 scopus 로고    scopus 로고
    • Virus-induced heterodimer formation between IRF-5 and IRF-7 modulates assembly of the IFNA enhanceosome invivo and transcriptional activity of IFNA genes
    • Barnes B.J., Field A.E., Pitha-Rowe P.M. Virus-induced heterodimer formation between IRF-5 and IRF-7 modulates assembly of the IFNA enhanceosome invivo and transcriptional activity of IFNA genes. JBiol Chem 2003, 278:16630-16641.
    • (2003) JBiol Chem , vol.278 , pp. 16630-16641
    • Barnes, B.J.1    Field, A.E.2    Pitha-Rowe, P.M.3
  • 40
    • 34548433979 scopus 로고    scopus 로고
    • Acompass that points to lupus: genetic studies on type I interferon pathway
    • Kyogoku C., Tsuchiya N. Acompass that points to lupus: genetic studies on type I interferon pathway. Genes Immun 2007, 8:445-455.
    • (2007) Genes Immun , vol.8 , pp. 445-455
    • Kyogoku, C.1    Tsuchiya, N.2
  • 41
    • 9144234252 scopus 로고    scopus 로고
    • Comparative analysis of IRF and IFN-alpha expression in human plasmacytoid and monocyte-derived dendritic cells
    • Izaguirre A., Barnes B.J., Amrute S., Yeow W.S., Megjugorac N., Dai J., et al. Comparative analysis of IRF and IFN-alpha expression in human plasmacytoid and monocyte-derived dendritic cells. JLeukoc Biol 2003, 74:1125-1138.
    • (2003) JLeukoc Biol , vol.74 , pp. 1125-1138
    • Izaguirre, A.1    Barnes, B.J.2    Amrute, S.3    Yeow, W.S.4    Megjugorac, N.5    Dai, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.