메뉴 건너뛰기




Volumn 80, Issue 7, 2014, Pages 2133-2141

Sustainable growth of Dehalococcoides mccartyi 195 by corrinoid salvaging and remodeling in defined lactate-fermenting consortia

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BIOCHEMISTRY; BIOREMEDIATION; CELL GROWTH; DECHLORINATION; GENES; GROUNDWATER; GROWTH KINETICS; STRAIN;

EID: 84896041288     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.03477-13     Document Type: Article
Times cited : (67)

References (51)
  • 1
    • 0001939376 scopus 로고    scopus 로고
    • A history of the production and use of carbon tetrachloride, tetrachloroethylene, trichloroethylene and 1,1,1-trichloroethane in the United States. Part 2. trichloroethylene and 1,1,1-trichloroethane
    • Doherty RE. 2000. A history of the production and use of carbon tetrachloride, tetrachloroethylene, trichloroethylene and 1,1,1-trichloroethane in the United States. Part 2: trichloroethylene and 1,1,1-trichloroethane. J. Environ. Forensics 1:83-93. http://dx.doi.org/10.1006 /enfo.2000.0011.
    • (2000) J. Environ. Forensics , vol.1 , pp. 83-93
    • Doherty, R.E.1
  • 3
    • 78650263913 scopus 로고    scopus 로고
    • Environmental impacts of remediation of a trichloroethenecontaminated site: life cycle assessment of remediation alternatives
    • Lemming G, Hauschild MZ, Chambon J, Binning PJ, Bulle C, Margni M, Bjerg PL. 2010. Environmental impacts of remediation of a trichloroethenecontaminated site: life cycle assessment of remediation alternatives. Environ. Sci. Technol. 44:9163-9169. http://dx.doi.org/10.1021/es102007s.
    • (2010) Environ. Sci. Technol. , vol.44 , pp. 9163-9169
    • Lemming, G.1    Hauschild, M.Z.2    Chambon, J.3    Binning, P.J.4    Bulle, C.5    Margni, M.6    Bjerg, P.L.7
  • 4
    • 0344622120 scopus 로고    scopus 로고
    • Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene
    • Maymó-Gatell X, Chien YT, Gossett JM, Zinder SH. 1997. Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. Science 276:1568-1571. http://dx.doi.org/10.1126/science.276.5318.1568.
    • (1997) Science , vol.276 , pp. 1568-1571
    • Maymó-Gatell, X.1    Chien, Y.T.2    Gossett, J.M.3    Zinder, S.H.4
  • 5
    • 0038264087 scopus 로고    scopus 로고
    • Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium
    • He JZ, Ritalahti KM, Yang KL, Koenigsberg SS, Löffler FE. 2003. Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium. Nature 424:62-65. http://dx.doi.org/10.1038/nature01717.
    • (2003) Nature , vol.424 , pp. 62-65
    • He, J.Z.1    Ritalahti, K.M.2    Yang, K.L.3    Koenigsberg, S.S.4    Löffler, F.E.5
  • 8
    • 84874041126 scopus 로고    scopus 로고
    • Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi
    • Löffler FE, Yan J, Ritalahti KM, Adrian L, Edwards EA, Konstantinidis KT, Müller JA, Fullerton H, Zinder SH, Spormann AM. 2013. Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi. Int. J. Syst. Evol. Microbiol. 63:625-635. http://dx.doi .org/10.1099/ijs.0.034926-0.
    • (2013) Int. J. Syst. Evol. Microbiol. , vol.63 , pp. 625-635
    • Löffler, F.E.1    Yan, J.2    Ritalahti, K.M.3    Adrian, L.4    Edwards, E.A.5    Konstantinidis, K.T.6    Müller, J.A.7    Fullerton, H.8    Zinder, S.H.9    Spormann, A.M.10
  • 9
    • 84868139720 scopus 로고    scopus 로고
    • Versatility in corrinoid salvaging and remodeling pathways supports the corrinoid-dependent metabolism of Dehalococcoides mccartyi
    • Yi S, Seth EC, Men YJ, Allen RH, Alvarez-Cohen L, Taga ME. 2012. Versatility in corrinoid salvaging and remodeling pathways supports the corrinoid-dependent metabolism of Dehalococcoides mccartyi. Appl. Environ. Microbiol. 78:7745-7752. http://dx.doi.org/10.1128/AEM.02150-12.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 7745-7752
    • Yi, S.1    Seth, E.C.2    Men, Y.J.3    Allen, R.H.4    Alvarez-Cohen, L.5    Taga, M.E.6
  • 10
    • 0026473124 scopus 로고
    • Hydrogen as an electron donor for dechlorination of tetrachloroethene by an anaerobic mixed culture
    • Distefano TD, Gossett JM, Zinder SH. 1992. Hydrogen as an electron donor for dechlorination of tetrachloroethene by an anaerobic mixed culture. Appl. Environ. Microbiol. 58:3622-3629.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 3622-3629
    • Distefano, T.D.1    Gossett, J.M.2    Zinder, S.H.3
  • 11
    • 0026599776 scopus 로고
    • 13C]formate into the 5,6-dimethylbenzimidazole moiety
    • 13C]formate into the 5,6-dimethylbenzimidazole moiety. Eur. J. Biochem. 204:679-683. http://dx .doi.org/10.1111/j.1432-1033.1992.tb16681.x.
    • (1992) Eur. J. Biochem. , vol.204 , pp. 679-683
    • Munder, M.1    Vogt, J.R.A.2    Vogler, B.3    Renz, P.4
  • 13
    • 0028032266 scopus 로고
    • Guanylcobamide and hypoxanthylcobamide: corrinoids formed by Desulfovibrio vulgaris
    • Guimaraes DH, Weber A, Klaiber I, Vogler B, Renz P. 1994. Guanylcobamide and hypoxanthylcobamide: corrinoids formed by Desulfovibrio vulgaris. Arch. Microbiol. 162:272-276. http://dx.doi.org/10.1007/BF00301850.
    • (1994) Arch. Microbiol. , vol.162 , pp. 272-276
    • Guimaraes, D.H.1    Weber, A.2    Klaiber, I.3    Vogler, B.4    Renz, P.5
  • 14
    • 34247125336 scopus 로고    scopus 로고
    • Growth and yields of dechlorinators, acetogens, and methanogens during reductive dechlorination of chlorinated ethenes and dihaloelimination of 1,2-dichloroethane
    • Duhamel M, Edwards EA. 2007. Growth and yields of dechlorinators, acetogens, and methanogens during reductive dechlorination of chlorinated ethenes and dihaloelimination of 1,2-dichloroethane. Environ. Sci. Technol. 41:2303-2310. http://dx.doi.org/10.1021/es062010r.
    • (2007) Environ. Sci. Technol. , vol.41 , pp. 2303-2310
    • Duhamel, M.1    Edwards, E.A.2
  • 16
    • 84866149957 scopus 로고    scopus 로고
    • Unexpected specificity of interspecies cobamide transfer from Geobacter spp. to organoha-lide-respiring Dehalococcoides mccartyi strains
    • Yan J, Ritalahti KM, Wagner DD, Loffler FE. 2012. Unexpected specificity of interspecies cobamide transfer from Geobacter spp. to organoha-lide-respiring Dehalococcoides mccartyi strains. Appl. Environ. Microbiol. 78:6630-6636. http://dx.doi.org/10.1128/AEM.01535-12.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 6630-6636
    • Yan, J.1    Ritalahti, K.M.2    Wagner, D.D.3    Loffler, F.E.4
  • 17
    • 0002449548 scopus 로고    scopus 로고
    • Biosynthesis of the 5,6-dimethylbenzimidazole moiety of cobalamin and of the other bases found in natural corrinoids
    • BanerjeeR (ed), John Wiley&Sons, Inc., New York, NY.
    • 12. John Wiley&Sons, Inc., New York, NY.
    • (1999) 12 , pp. 557-575
    • Renz, P.1
  • 19
    • 0001545943 scopus 로고
    • 12 or 5-hydroxybenzimidazolyl cobamide are the corrinoids found in methanogenic bacteria
    • 12 or 5-hydroxybenzimidazolyl cobamide are the corrinoids found in methanogenic bacteria. Arch. Microbiol. 149:268-271. http://dx.doi.org/10.1007/BF00422016.
    • (1988) Arch. Microbiol. , vol.149 , pp. 268-271
    • Stupperich, E.1    Krautler, B.2
  • 20
    • 84884176231 scopus 로고    scopus 로고
    • Guided cobalamin biosynthesis supports Dehalococcoides mccartyi reductive dechlorination activity
    • Yan J, Im J, Yang Y, Loffler FE. 2013. Guided cobalamin biosynthesis supports Dehalococcoides mccartyi reductive dechlorination activity. Philos. Trans. R. Soc. Lond. B Biol. Sci. 368:20120320. http://dx.doi.org/10 .1098/rstb.2012.0320.
    • (2013) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.368 , pp. 20120320
    • Yan, J.1    Im, J.2    Yang, Y.3    Loffler, F.E.4
  • 21
    • 84855937815 scopus 로고    scopus 로고
    • Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses
    • Men Y, Feil H, VerBerkmoes NC, Shah MB, Johnson DR, Lee PKH, West KA, Zinder SH, Andersen GL, Alvarez-Cohen L. 2012. Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses. ISME J. 6:410-421. http://dx.doi .org/10.1038/ismej.2011.111.
    • (2012) ISME J. , vol.6 , pp. 410-421
    • Men, Y.1    Feil, H.2    VerBerkmoes, N.C.3    Shah, M.B.4    Johnson, D.R.5    Lee, P.K.H.6    West, K.A.7    Zinder, S.H.8    Andersen, G.L.9    Alvarez-Cohen, L.10
  • 23
    • 84879842816 scopus 로고    scopus 로고
    • Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions
    • Men YJ, Lee PKH, Harding KC, Alvarez-Cohen L. 2013. Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions. Appl. Microbiol. Biotechnol. 97: 6439-6450. http://dx.doi.org/10.1007/s00253-013-4896-8.
    • (2013) Appl. Microbiol. Biotechnol. , vol.97 , pp. 6439-6450
    • Men, Y.J.1    Lee, P.K.H.2    Harding, K.C.3    Alvarez-Cohen, L.4
  • 25
    • 0037317620 scopus 로고    scopus 로고
    • Complete detoxification of vinyl chloride by an anaerobic enrichment culture and identification of the reductively dechlorinating population as a Dehalococcoides species
    • He JZ, Ritalahti KM, Aiello MR, Löffler FE. 2003. Complete detoxification of vinyl chloride by an anaerobic enrichment culture and identification of the reductively dechlorinating population as a Dehalococcoides species. Appl. Environ. Microbiol. 69:996-1003. http://dx.doi.org/10.1128 /AEM.69.2.996-1003.2003.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 996-1003
    • He, J.Z.1    Ritalahti, K.M.2    Aiello, M.R.3    Löffler, F.E.4
  • 28
    • 22144451860 scopus 로고    scopus 로고
    • An internal reference technique for accurately quantifying specific mRNAs by realtime PCR with a application to the tceA reductive dehalogenase gene
    • Johnson DR, Lee PKH, Holmes VF, Alvarez-Cohen L. 2005. An internal reference technique for accurately quantifying specific mRNAs by realtime PCR with a application to the tceA reductive dehalogenase gene. Appl. Environ. Microbiol. 71:3866-3871. http://dx.doi.org/10.1128/AEM .71.7.3866-3871.2005.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3866-3871
    • Johnson, D.R.1    Lee, P.K.H.2    Holmes, V.F.3    Alvarez-Cohen, L.4
  • 30
    • 0037879903 scopus 로고    scopus 로고
    • Affymetrix. Affymetrix, Santa Clara, CA
    • Affymetrix. 2009. GeneChip expression analysis technical manual. Affymetrix, Santa Clara, CA. http://media.affymetrix.com/support/downlo ads/manuals/expression_analysis_manual.pdf.
    • (2009) GeneChip expression analysis technical manual
  • 33
    • 43049147593 scopus 로고    scopus 로고
    • Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase
    • Johnson DR, Brodie EL, Hubbard AE, Andersen GL, Zinder SH, Alvarez-Cohen L. 2008. Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase. Appl. Environ. Microbiol. 74:2864-2872. http://dx.doi.org/10 .1128/AEM.02208-07.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2864-2872
    • Johnson, D.R.1    Brodie, E.L.2    Hubbard, A.E.3    Andersen, G.L.4    Zinder, S.H.5    Alvarez-Cohen, L.6
  • 34
    • 64549086777 scopus 로고    scopus 로고
    • Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195
    • Johnson DR, Nemir A, Andersen GL, Zinder SH, Alvarez-Cohen L. 2009. Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195. FEMS Microbiol. Lett. 294:198-206. http://dx.doi.org/10.1111/j.1574-6968.2009.01569.x.
    • (2009) FEMS Microbiol. Lett. , vol.294 , pp. 198-206
    • Johnson, D.R.1    Nemir, A.2    Andersen, G.L.3    Zinder, S.H.4    Alvarez-Cohen, L.5
  • 35
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57:289-300.
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 36
    • 32044454849 scopus 로고    scopus 로고
    • Transcriptional expression of the tceA gene in a Dehalococcoidescontaining microbial enrichment
    • Johnson DR, Lee PKH, Holmes VF, Fortin AC, Alvarez-Cohen L. 2005. Transcriptional expression of the tceA gene in a Dehalococcoidescontaining microbial enrichment. Appl. Environ. Microbiol. 71:7145-7151. http://dx.doi.org/10.1128/AEM.71.11.7145-7151.2005.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 7145-7151
    • Johnson, D.R.1    Lee, P.K.H.2    Holmes, V.F.3    Fortin, A.C.4    Alvarez-Cohen, L.5
  • 37
    • 84871901489 scopus 로고    scopus 로고
    • Genomic and physiological characterization of the chromate-reducing, aquifer-derived firmicute Pelosinus sp. strain HCF1
    • Beller HR, Han RY, Karaoz U, Lim H, Brodie EL. 2013. Genomic and physiological characterization of the chromate-reducing, aquifer-derived firmicute Pelosinus sp. strain HCF1. Appl. Environ. Microbiol. 79:63-73. http://dx.doi.org/10.1128/AEM.02496-12.
    • (2013) Appl. Environ. Microbiol. , vol.79 , pp. 63-73
    • Beller, H.R.1    Han, R.Y.2    Karaoz, U.3    Lim, H.4    Brodie, E.L.5
  • 38
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: inference of RNA alignments
    • Nawrocki EP, Kolbe DL, Eddy SR. 2009. Infernal 1.0: inference of RNA alignments. Bioinformatics 25:1335-1337. http://dx.doi.org/10.1093/bio informatics/btp157.
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 39
    • 84876164952 scopus 로고    scopus 로고
    • Growth inhibition of Sporomusa ovata by incorporation of benzimidazole bases into cobamides
    • Mok KC, Taga ME. 2013. Growth inhibition of Sporomusa ovata by incorporation of benzimidazole bases into cobamides. J. Bacteriol. 195: 1902-1911. http://dx.doi.org/10.1128/JB.01282-12.
    • (2013) J. Bacteriol. , vol.195 , pp. 1902-1911
    • Mok, K.C.1    Taga, M.E.2
  • 40
    • 0041766196 scopus 로고    scopus 로고
    • 12: catalysis by cobalamin-dependent enzymes
    • 12: catalysis by cobalamin-dependent enzymes. Annu. Rev. Biochem. 72:209-247. http://dx.doi.org/10.1146/annurev.biochem.72.121801.161828.
    • (2003) Annu. Rev. Biochem. , vol.72 , pp. 209-247
    • Banerjee, R.1    Ragsdale, S.W.2
  • 41
    • 44349097016 scopus 로고    scopus 로고
    • Two distinct roles for two functional cobaltochelatases (CbiK) in Desulfovibrio vulgaris Hildenborough
    • Lobo SAL, Brindley AA, Romao CV, Leech HK, Warren MJ, Saraiva LM. 2008. Two distinct roles for two functional cobaltochelatases (CbiK) in Desulfovibrio vulgaris Hildenborough. Biochemistry 47:5851-5857. http://dx.doi.org/10.1021/bi800342c.
    • (2008) Biochemistry , vol.47 , pp. 5851-5857
    • Lobo, S.A.L.1    Brindley, A.A.2    Romao, C.V.3    Leech, H.K.4    Warren, M.J.5    Saraiva, L.M.6
  • 42
    • 60949107090 scopus 로고    scopus 로고
    • Effect of a corrinoid on Methanosarcina barkeri DNA synthesis
    • Ryzhkova EP, Briukhanov AL. 2009. Effect of a corrinoid on Methanosarcina barkeri DNA synthesis. Mikrobiologiia 78:5-11.
    • (2009) Mikrobiologiia , vol.78 , pp. 5-11
    • Ryzhkova, E.P.1    Briukhanov, A.L.2
  • 44
    • 0020003395 scopus 로고
    • 12 in anaerobic bacteri. Mode of incorporation of glycine into the 5,6-dimethylbenzimidazole moiety in Eubacterium limosum
    • 12 in anaerobic bacteria. Mode of incorporation of glycine into the 5,6-dimethylbenzimidazole moiety in Eubacterium limosum. Eur. J. Biochem. 122:569-571.
    • (1982) Eur. J. Biochem. , vol.122 , pp. 569-571
    • Lamm, L.1    Heckmann, G.2    Renz, P.3
  • 45
    • 0023958244 scopus 로고
    • 12 in anaerobic bacteri. Experiments with Eubacterium limosum on the origin of the amide groups of the corrin ring and of N-3 of the 5,6-dimethylbenzimidazole part
    • 12 in anaerobic bacteria. Experiments with Eubacterium limosum on the origin of the amide groups of the corrin ring and of N-3 of the 5,6-dimethylbenzimidazole part. Eur. J. Biochem. 171:655-659.
    • (1988) Eur. J. Biochem. , vol.171 , pp. 655-659
    • Vogt, J.R.1    Renz, P.2
  • 46
    • 34347398474 scopus 로고    scopus 로고
    • Conversion of cobinamide into adenosylcobamide in bacteria and archaea
    • Escalante-Semerena JC. 2007. Conversion of cobinamide into adenosylcobamide in bacteria and archaea. J. Bacteriol. 189:4555-4560. http://dx .doi.org/10.1128/JB.00503-07.
    • (2007) J. Bacteriol. , vol.189 , pp. 4555-4560
    • Escalante-Semerena, J.C.1
  • 48
    • 84875506815 scopus 로고    scopus 로고
    • Global gene expression of Dehalococcoides within a robust dynamic TCEdechlorinating community under conditions of periodic substrate supply
    • West KA, Lee PK, Johnson DR, Zinder SH, Alvarez-Cohen L. 2013. Global gene expression of Dehalococcoides within a robust dynamic TCEdechlorinating community under conditions of periodic substrate supply. Biotechnol. Bioeng. 110:1333-1341. http://dx.doi.org/10.1002/bit.24819.
    • (2013) Biotechnol. Bioeng. , vol.110 , pp. 1333-1341
    • West, K.A.1    Lee, P.K.2    Johnson, D.R.3    Zinder, S.H.4    Alvarez-Cohen, L.5
  • 49
    • 0042834096 scopus 로고    scopus 로고
    • 12 metabolism and transport in bacteria by a conserved RNA structural element
    • 12 metabolism and transport in bacteria by a conserved RNA structural element. RNA 9:1084-1097. http://dx.doi.org/10 .1261/rna.5710303.
    • (2003) RNA , vol.9 , pp. 1084-1097
    • Vitreschak, A.G.1    Rodionov, D.A.2    Mironov, A.A.3    Gelfand, M.S.4
  • 50
    • 84857080584 scopus 로고    scopus 로고
    • Transcriptional analysis of a Dehalococcoides-containing microbial consortium reveals prophage activation
    • Waller AS, Hug LA, Mo K, Radford DR, Maxwell KL, Edwards EA. 2012. Transcriptional analysis of a Dehalococcoides-containing microbial consortium reveals prophage activation. Appl. Environ. Microbiol. 78: 1178-1186. http://dx.doi.org/10.1128/AEM.06416-11.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 1178-1186
    • Waller, A.S.1    Hug, L.A.2    Mo, K.3    Radford, D.R.4    Maxwell, K.L.5    Edwards, E.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.