메뉴 건너뛰기




Volumn 103, Issue 1, 2014, Pages 154-159

Transcriptome analysis of the Ophiocordyceps sinensis fruiting body reveals putative genes involved in fruiting body development and cordycepin biosynthesis

Author keywords

Cordycepin; Expressed sequence tag; Ophiocordyceps sinensis; Transcriptome

Indexed keywords

CORDYCEPIN;

EID: 84895865945     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2014.01.002     Document Type: Article
Times cited : (90)

References (46)
  • 2
    • 79958763005 scopus 로고    scopus 로고
    • What is the Chinese caterpillar fungus Ophiocordyceps sinensis (Ophiocordycipitaceae)?
    • Shrestha B., Zhang W., Zhang Y., Liu X. What is the Chinese caterpillar fungus Ophiocordyceps sinensis (Ophiocordycipitaceae)?. Mycology 2010, 1:228-236.
    • (2010) Mycology , vol.1 , pp. 228-236
    • Shrestha, B.1    Zhang, W.2    Zhang, Y.3    Liu, X.4
  • 3
    • 0032161188 scopus 로고    scopus 로고
    • The scientific rediscovery of an ancient Chinese herbal medicine: Cordyceps sinensis Part I
    • Zhu J.S., Halpern G.M., Jones K. The scientific rediscovery of an ancient Chinese herbal medicine: Cordyceps sinensis Part I. J. Altern. Complement. Med. 1998, 4:289-303.
    • (1998) J. Altern. Complement. Med. , vol.4 , pp. 289-303
    • Zhu, J.S.1    Halpern, G.M.2    Jones, K.3
  • 4
    • 80053074816 scopus 로고    scopus 로고
    • Host insect species of Ophiocordyceps sinensis: a review
    • Wang X.L., Yao Y.J. Host insect species of Ophiocordyceps sinensis: a review. Zookeys 2011, 43-59.
    • (2011) Zookeys , pp. 43-59
    • Wang, X.L.1    Yao, Y.J.2
  • 5
    • 34547623946 scopus 로고    scopus 로고
    • Phylogenetic relationships of host insects of Cordyceps sinensis inferred from mitochondrial Cytochrome b sequences
    • Zhou C., et al. Phylogenetic relationships of host insects of Cordyceps sinensis inferred from mitochondrial Cytochrome b sequences. Prog. Nat. Sci. 2007, 17:789-797.
    • (2007) Prog. Nat. Sci. , vol.17 , pp. 789-797
    • Zhou, C.1
  • 6
    • 79958725455 scopus 로고    scopus 로고
    • Notes on Cordyceps species collected from the central region of Nepal
    • Shrestha B., Sung J.M. Notes on Cordyceps species collected from the central region of Nepal. Mycobiology 2005, 33:235-239.
    • (2005) Mycobiology , vol.33 , pp. 235-239
    • Shrestha, B.1    Sung, J.M.2
  • 7
    • 84555194879 scopus 로고    scopus 로고
    • A survey of the geographic distribution of Ophiocordyceps sinensis
    • Li Y., et al. A survey of the geographic distribution of Ophiocordyceps sinensis. J. Microbiol. 2011, 49:913-919.
    • (2011) J. Microbiol. , vol.49 , pp. 913-919
    • Li, Y.1
  • 8
    • 0032254210 scopus 로고    scopus 로고
    • The scientific rediscovery of a precious ancient Chinese herbal regimen: Cordyceps sinensis: part II
    • Zhu J.S., Halpern G.M., Jones K. The scientific rediscovery of a precious ancient Chinese herbal regimen: Cordyceps sinensis: part II. J. Altern. Complement. Med. 1998, 4:429-457.
    • (1998) J. Altern. Complement. Med. , vol.4 , pp. 429-457
    • Zhu, J.S.1    Halpern, G.M.2    Jones, K.3
  • 9
    • 9744248320 scopus 로고    scopus 로고
    • The traditional Chinese medicine Cordyceps sinensis and its effects on apoptotic homeostasis
    • Buenz E., Bauer B., Osmundson T., Motley T. The traditional Chinese medicine Cordyceps sinensis and its effects on apoptotic homeostasis. J. Ethnopharmacol. 2005, 96:19-29.
    • (2005) J. Ethnopharmacol. , vol.96 , pp. 19-29
    • Buenz, E.1    Bauer, B.2    Osmundson, T.3    Motley, T.4
  • 10
    • 34248360547 scopus 로고    scopus 로고
    • Fruiting-body development in ascomycetes
    • Pöggeler S., Nowrousian M., Kück U. Fruiting-body development in ascomycetes. Mycotaxon 2006, 1:325-355.
    • (2006) Mycotaxon , vol.1 , pp. 325-355
    • Pöggeler, S.1    Nowrousian, M.2    Kück, U.3
  • 11
    • 74049122458 scopus 로고    scopus 로고
    • Genetic diversity of Ophiocordyceps sinensis, a medicinal fungus endemic to the Tibetan Plateau: implications for its evolution and conservation
    • Zhang Y., et al. Genetic diversity of Ophiocordyceps sinensis, a medicinal fungus endemic to the Tibetan Plateau: implications for its evolution and conservation. BMC Evol. Biol. 2009, 9:290.
    • (2009) BMC Evol. Biol. , vol.9 , pp. 290
    • Zhang, Y.1
  • 12
    • 44649201947 scopus 로고    scopus 로고
    • Artificial culture of seventeen Cordyceps spp
    • Li C., Nam S., Geng D., Fan M., Li Z. Artificial culture of seventeen Cordyceps spp. Mycosystema 2006, 25:639-645.
    • (2006) Mycosystema , vol.25 , pp. 639-645
    • Li, C.1    Nam, S.2    Geng, D.3    Fan, M.4    Li, Z.5
  • 13
    • 81555232562 scopus 로고    scopus 로고
    • Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional Chinese medicine
    • Zheng P., et al. Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional Chinese medicine. Genome Biol. 2011, 12:R116.
    • (2011) Genome Biol. , vol.12
    • Zheng, P.1
  • 14
    • 0035986403 scopus 로고    scopus 로고
    • The fruiting body and its caterpillar host of Cordyceps sinensis show close resemblance in main constituents and anti-oxidation activity
    • Li S., Su Z., Dong T., Tsim K. The fruiting body and its caterpillar host of Cordyceps sinensis show close resemblance in main constituents and anti-oxidation activity. Phytomedicine 2002, 9:319-324.
    • (2002) Phytomedicine , vol.9 , pp. 319-324
    • Li, S.1    Su, Z.2    Dong, T.3    Tsim, K.4
  • 15
    • 57049187079 scopus 로고    scopus 로고
    • Yartsa Gunbu (Cordyceps sinensis) and the fungal commodification of Tibet's rural economy
    • Winkler D. Yartsa Gunbu (Cordyceps sinensis) and the fungal commodification of Tibet's rural economy. Econ. Bot. 2008, 62:291-305.
    • (2008) Econ. Bot. , vol.62 , pp. 291-305
    • Winkler, D.1
  • 16
    • 0001615432 scopus 로고
    • Cordycepin, a metabolic product isolated from cultures of Cordyceps militaris (Linn.) Link
    • Cunningham K., Manson W., Spring F. Cordycepin, a metabolic product isolated from cultures of Cordyceps militaris (Linn.) Link. Nature 1950, 166:949.
    • (1950) Nature , vol.166 , pp. 949
    • Cunningham, K.1    Manson, W.2    Spring, F.3
  • 18
    • 0014912527 scopus 로고
    • Messenger and heterogeneous nuclear RNA in HeLa cells: differential inhibition by cordycepin
    • Penman S., Rosbash M., Penman M. Messenger and heterogeneous nuclear RNA in HeLa cells: differential inhibition by cordycepin. Proc. Natl. Acad. Sci. 1970, 67:1878-1885.
    • (1970) Proc. Natl. Acad. Sci. , vol.67 , pp. 1878-1885
    • Penman, S.1    Rosbash, M.2    Penman, M.3
  • 19
    • 16244366810 scopus 로고    scopus 로고
    • Effect of cordycepin (3'-deoxyadenosine) on hematogenic lung metastatic model mice
    • Nakamura K., et al. Effect of cordycepin (3'-deoxyadenosine) on hematogenic lung metastatic model mice. In Vivo 2005, 19:137-141.
    • (2005) In Vivo , vol.19 , pp. 137-141
    • Nakamura, K.1
  • 20
    • 0014512951 scopus 로고
    • The selective interruption of nucleolar RNA synthesis in HeLa cells by cordycepin
    • Siev M., Weinberg R., Penman S. The selective interruption of nucleolar RNA synthesis in HeLa cells by cordycepin. J. Cell Biol. 1969, 41:510-520.
    • (1969) J. Cell Biol. , vol.41 , pp. 510-520
    • Siev, M.1    Weinberg, R.2    Penman, S.3
  • 21
    • 33747347753 scopus 로고    scopus 로고
    • Cordycepin inhibits lipopolysaccharide-induced inflammation by the suppression of NF-κB through Akt and p38 inhibition in RAW 264.7 macrophage cells
    • Kim H.G., et al. Cordycepin inhibits lipopolysaccharide-induced inflammation by the suppression of NF-κB through Akt and p38 inhibition in RAW 264.7 macrophage cells. Eur. J. Pharmacol. 2006, 545:192-199.
    • (2006) Eur. J. Pharmacol. , vol.545 , pp. 192-199
    • Kim, H.G.1
  • 22
    • 77449132927 scopus 로고    scopus 로고
    • Cordycepin inhibits protein synthesis and cell adhesion through effects on signal transduction
    • Wong Y.Y., et al. Cordycepin inhibits protein synthesis and cell adhesion through effects on signal transduction. J. Biol. Chem. 2010, 285:2610-2621.
    • (2010) J. Biol. Chem. , vol.285 , pp. 2610-2621
    • Wong, Y.Y.1
  • 24
    • 33745220885 scopus 로고
    • Further evidence for biosynthesis of cordycepin and proof of the structure of 3'-deoxyribose
    • Suhadolnik R., Cory J.G. Further evidence for biosynthesis of cordycepin and proof of the structure of 3'-deoxyribose. Biochim. Biophys. Acta 1964, 91:661.
    • (1964) Biochim. Biophys. Acta , vol.91 , pp. 661
    • Suhadolnik, R.1    Cory, J.G.2
  • 26
    • 84255163349 scopus 로고    scopus 로고
    • Analysis of the transcriptome of Panax notoginseng root uncovers putative triterpene saponin-biosynthetic genes and genetic markers
    • Luo H., et al. Analysis of the transcriptome of Panax notoginseng root uncovers putative triterpene saponin-biosynthetic genes and genetic markers. BMC Genomics 2011, 12:S5.
    • (2011) BMC Genomics , vol.12
    • Luo, H.1
  • 27
    • 80053316627 scopus 로고    scopus 로고
    • De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients
    • Hua W., Zhang Y., Song J., Zhao L., Wang Z. De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients. Genomics 2011, 98:272-279.
    • (2011) Genomics , vol.98 , pp. 272-279
    • Hua, W.1    Zhang, Y.2    Song, J.3    Zhao, L.4    Wang, Z.5
  • 28
    • 77951605029 scopus 로고    scopus 로고
    • EST analysis reveals putative genes involved in glycyrrhizin biosynthesis
    • Li Y., et al. EST analysis reveals putative genes involved in glycyrrhizin biosynthesis. BMC Genomics 2010, 11:268.
    • (2010) BMC Genomics , vol.11 , pp. 268
    • Li, Y.1
  • 29
    • 77952270480 scopus 로고    scopus 로고
    • Genome research profile of two Cordyceps sinensis cDNA libraries
    • Zhang S.P., Feng H., Li X.Y., Jin Y.S., Dong W. Genome research profile of two Cordyceps sinensis cDNA libraries. Chin. Sci. Bull. 2010, 55:1403-1411.
    • (2010) Chin. Sci. Bull. , vol.55 , pp. 1403-1411
    • Zhang, S.P.1    Feng, H.2    Li, X.Y.3    Jin, Y.S.4    Dong, W.5
  • 30
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: find statistically overrepresented Gene Ontologies within a group of genes
    • Beißbarth T., Speed T.P. GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 2004, 20:1464-1465.
    • (2004) Bioinformatics , vol.20 , pp. 1464-1465
    • Beißbarth, T.1    Speed, T.P.2
  • 31
    • 0346801873 scopus 로고    scopus 로고
    • The Gene Ontology (GO) database and informatics resource
    • Harris M., et al. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 2004, 32:D258.
    • (2004) Nucleic Acids Res. , vol.32
    • Harris, M.1
  • 32
    • 0032919364 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Ogata H., et al. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 1999, 27:29-34.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 29-34
    • Ogata, H.1
  • 33
    • 38549126643 scopus 로고    scopus 로고
    • KEGG for linking genomes to life and the environment
    • Kanehisa M., et al. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 2008, 36:D480-D484.
    • (2008) Nucleic Acids Res. , vol.36
    • Kanehisa, M.1
  • 34
    • 0034513749 scopus 로고    scopus 로고
    • Proposed nomenclature for mating type genes of filamentous ascomycetes
    • Turgeon B.G., Yoder O. Proposed nomenclature for mating type genes of filamentous ascomycetes. Fungal Genet. Biol. 2000, 31:1-5.
    • (2000) Fungal Genet. Biol. , vol.31 , pp. 1-5
    • Turgeon, B.G.1    Yoder, O.2
  • 35
    • 0031710881 scopus 로고    scopus 로고
    • Application of mating type gene technology to problems in fungal biology
    • Turgeon B.G. Application of mating type gene technology to problems in fungal biology. Annu. Rev. Phytopathol. 1998, 36:115-137.
    • (1998) Annu. Rev. Phytopathol. , vol.36 , pp. 115-137
    • Turgeon, B.G.1
  • 37
    • 84883552032 scopus 로고    scopus 로고
    • Isolation of the MAT1-1 mating type idiomorph and evidence for selfing in the Chinese medicinal fungus Ophiocordyceps sinensis
    • Bushley K.E., Li Y., Wang W.J., Wang X.L., Jiao L., Spatafora J.W., Yao Y.J. Isolation of the MAT1-1 mating type idiomorph and evidence for selfing in the Chinese medicinal fungus Ophiocordyceps sinensis. Fungal Biol.-UK 2013, 10.1016/j.funbio.2013.06.001.
    • (2013) Fungal Biol.-UK
    • Bushley, K.E.1    Li, Y.2    Wang, W.J.3    Wang, X.L.4    Jiao, L.5    Spatafora, J.W.6    Yao, Y.J.7
  • 38
    • 33750364432 scopus 로고    scopus 로고
    • Phylogenetic and structural analyses of the mating type loci in Clavicipitaceae
    • Yokoyama E., Arakawa M., Yamagishi K., Hara A. Phylogenetic and structural analyses of the mating type loci in Clavicipitaceae. FEMS Microbiol. Lett. 2006, 264:182-191.
    • (2006) FEMS Microbiol. Lett. , vol.264 , pp. 182-191
    • Yokoyama, E.1    Arakawa, M.2    Yamagishi, K.3    Hara, A.4
  • 39
    • 0031432471 scopus 로고    scopus 로고
    • Transcription factors: an overview
    • Latchman D.S. Transcription factors: an overview. Int. J. Biochem. Cell Biol. 1997, 29:1305-1312.
    • (1997) Int. J. Biochem. Cell Biol. , vol.29 , pp. 1305-1312
    • Latchman, D.S.1
  • 40
    • 0036223624 scopus 로고    scopus 로고
    • The fle1 gene encoding a C2H2 zinc finger protein co ordinates male and female sexual differentiation in Podospora anserina
    • Coppin E. The fle1 gene encoding a C2H2 zinc finger protein co ordinates male and female sexual differentiation in Podospora anserina. Mol. Microbiol. 2002, 43:1255-1268.
    • (2002) Mol. Microbiol. , vol.43 , pp. 1255-1268
    • Coppin, E.1
  • 41
    • 23344437797 scopus 로고    scopus 로고
    • A mitogen-activated protein kinase pathway essential for mating and contributing to vegetative growth in Neurospora crassa
    • Li D., Bobrowicz P., Wilkinson H.H., Ebbole D.J. A mitogen-activated protein kinase pathway essential for mating and contributing to vegetative growth in Neurospora crassa. Genetics 2005, 170:1091-1104.
    • (2005) Genetics , vol.170 , pp. 1091-1104
    • Li, D.1    Bobrowicz, P.2    Wilkinson, H.H.3    Ebbole, D.J.4
  • 42
    • 0034098572 scopus 로고    scopus 로고
    • Aspergillus SteA (Sterile12 like) is a homeodomain C2/H2 Zn+2 finger transcription factor required for sexual reproduction
    • Vallim M.A., Miller K.Y., Miller B.L. Aspergillus SteA (Sterile12 like) is a homeodomain C2/H2 Zn+2 finger transcription factor required for sexual reproduction. Mol. Microbiol. 2002, 36:290-301.
    • (2002) Mol. Microbiol. , vol.36 , pp. 290-301
    • Vallim, M.A.1    Miller, K.Y.2    Miller, B.L.3
  • 43
    • 0034897976 scopus 로고    scopus 로고
    • The nsdD gene encodes a putative GATA type transcription factor necessary for sexual development of Aspergillus nidulans
    • Han K.H., et al. The nsdD gene encodes a putative GATA type transcription factor necessary for sexual development of Aspergillus nidulans. Mol. Microbiol. 2001, 41:299-309.
    • (2001) Mol. Microbiol. , vol.41 , pp. 299-309
    • Han, K.H.1
  • 44
    • 0034641669 scopus 로고    scopus 로고
    • ASD4, a new GATA factor of Neurospora crassa, displays sequence-specific DNA binding and functions in ascus and ascospore development
    • Feng B., Haas H., Marzluf G.A. ASD4, a new GATA factor of Neurospora crassa, displays sequence-specific DNA binding and functions in ascus and ascospore development. Biochemistry 2000, 39:11065-11073.
    • (2000) Biochemistry , vol.39 , pp. 11065-11073
    • Feng, B.1    Haas, H.2    Marzluf, G.A.3
  • 45
    • 77952315463 scopus 로고    scopus 로고
    • Ribonucleotide reductases: substrate specificity by allostery
    • Reichard P. Ribonucleotide reductases: substrate specificity by allostery. Biochem. Biophys. Res. Commun. 2010, 396:19-23.
    • (2010) Biochem. Biophys. Res. Commun. , vol.396 , pp. 19-23
    • Reichard, P.1
  • 46
    • 77951121533 scopus 로고    scopus 로고
    • De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis
    • Sun C., et al. De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis. BMC Genomics 2010, 11:262.
    • (2010) BMC Genomics , vol.11 , pp. 262
    • Sun, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.