-
1
-
-
78650718836
-
The intracellular dynamic of protein palmitoylation
-
Salaun C, Greaves J, Chamberlain LH (2010) The intracellular dynamic of protein palmitoylation. J Cell Biol 191: 1229-1238.
-
(2010)
J Cell Biol
, vol.191
, pp. 1229-1238
-
-
Salaun, C.1
Greaves, J.2
Chamberlain, L.H.3
-
2
-
-
0037213362
-
The on-off story of protein palmitoylation
-
Bijlmakers MJ, Marsh M (2003) The on-off story of protein palmitoylation. Trends Cell Biol 13: 32-42.
-
(2003)
Trends Cell Biol
, vol.13
, pp. 32-42
-
-
Bijlmakers, M.J.1
Marsh, M.2
-
3
-
-
10044268365
-
On the mechanism of protein palmitoylation
-
DOI 10.1038/sj.embor.7400277
-
Dietrich LE, Ungermann C (2004) On the mechanism of protein palmitoylation. EMBO Rep 5: 1053-1057. (Pubitemid 39600203)
-
(2004)
EMBO Reports
, vol.5
, Issue.11
, pp. 1053-1057
-
-
Dietrich, L.E.P.1
Ungermann, C.2
-
4
-
-
0038321812
-
New insights into the mechanisms of protein palmitoylation
-
Linder ME, Deschenes RJ (2003) New insights into the mechanisms of protein palmitoylation. Biochemistry 42: 4311-4320.
-
(2003)
Biochemistry
, vol.42
, pp. 4311-4320
-
-
Linder, M.E.1
Deschenes, R.J.2
-
5
-
-
34247590130
-
Palmitoylation of ligands, receptors, and intracellular signaling molecules
-
Resh MD (2006) Palmitoylation of ligands, receptors, and intracellular signaling molecules. Sci STKE 2006: re14.
-
(2006)
Sci STKE
, vol.2006
-
-
Resh, M.D.1
-
6
-
-
25844522857
-
Modulation of neuronal protein trafficking and function by palmitoylation
-
DOI 10.1016/j.conb.2005.08.001, PII S0959438805001224, Neuronal and Glial Cell Biology/New Technologies
-
Huang K, El-Husseini A (2005) Modulation of neuronal protein trafficking and function by palmitoylation. Curr Opin Neurobiol 15: 527-535. (Pubitemid 41394396)
-
(2005)
Current Opinion in Neurobiology
, vol.15
, Issue.5
, pp. 527-535
-
-
Huang, K.1
El-Husseini, A.2
-
7
-
-
21444433243
-
Palmitoylated cysteine 192 is required for RhoB tumor-suppressive and apoptotic activities
-
Wang DA, Sebti SM (2005) Palmitoylated cysteine 192 is required for RhoB tumor-suppressive and apoptotic activities. J Biol Chem 280: 19243-19249.
-
(2005)
J Biol Chem
, vol.280
, pp. 19243-19249
-
-
Wang, D.A.1
Sebti, S.M.2
-
8
-
-
0347052880
-
Differential Recruitment of Kv1.4 and Kv4.2 to Lipid Rafts by PSD-95
-
DOI 10.1074/jbc.M304675200
-
Wong W, Schlichter LC (2004) Differential recruitment of Kv1.4 and Kv4.2 to lipid rafts by PSD-95. J Biol Chem 279: 444-452. (Pubitemid 38044845)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.1
, pp. 444-452
-
-
Wong, W.1
Schlichter, L.C.2
-
9
-
-
12544252686
-
The SNARE proteins SNAP-25 and SNAP-23 display different affinities for lipid rafts in PC12 cells. Regulation by distinct cysteine-rich domains
-
Salaun C, Gould GW, Chamberlain LH (2005) The SNARE proteins SNAP-25 and SNAP-23 display different affinities for lipid rafts in PC12 cells. Regulation by distinct cysteine-rich domains. J Biol Chem 280: 1236-1240.
-
(2005)
J Biol Chem
, vol.280
, pp. 1236-1240
-
-
Salaun, C.1
Gould, G.W.2
Chamberlain, L.H.3
-
10
-
-
17844408453
-
Palmitoylation of claudins is required for efficient tight-junction localization
-
DOI 10.1242/jcs.01735
-
Van Itallie CM, Gambling TM, Carson JL, Anderson JM (2005) Palmitoylation of claudins is required for efficient tight-junction localization. J Cell Sci 118: 1427-1436. (Pubitemid 40585123)
-
(2005)
Journal of Cell Science
, vol.118
, Issue.7
, pp. 1427-1436
-
-
Van Itallie, C.M.1
Gambling, T.M.2
Carson, J.L.3
Anderson, J.M.4
-
11
-
-
33645313475
-
CSS-Palm: Palmitoylation site prediction with a clustering and scoring strategy (CSS)
-
Zhou F, Xue Y, Yao X, Xu Y (2006) CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Bioinformatics 22: 894-896.
-
(2006)
Bioinformatics
, vol.22
, pp. 894-896
-
-
Zhou, F.1
Xue, Y.2
Yao, X.3
Xu, Y.4
-
12
-
-
33750630572
-
NBA-Palm: Prediction of palmitoylation site implemented in Naive Bayes algorithm
-
Xue Y, Chen H, Jin C, Sun Z, Yao X (2006) NBA-Palm: prediction of palmitoylation site implemented in Naive Bayes algorithm. BMC Bioinformatics 7: 458.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 458
-
-
Xue, Y.1
Chen, H.2
Jin, C.3
Sun, Z.4
Yao, X.5
-
13
-
-
54249148026
-
CSS-Palm 2.0: An updated software for palmitoylation sites prediction
-
Ren J, Wen L, Gao X, Jin C, Xue Y, et al. (2008) CSS-Palm 2.0: an updated software for palmitoylation sites prediction. Protein Eng Des Sel 21: 639-644.
-
(2008)
Protein Eng des Sel
, vol.21
, pp. 639-644
-
-
Ren, J.1
Wen, L.2
Gao, X.3
Jin, C.4
Xue, Y.5
-
14
-
-
70350441865
-
Prediction of palmitoylation sites using the composition of k-spaced amino acid pairs
-
Wang XB, Wu LY, Wang YC, Deng NY (2009) Prediction of palmitoylation sites using the composition of k-spaced amino acid pairs. Protein Eng Des Sel 22: 707-712.
-
(2009)
Protein Eng des Sel
, vol.22
, pp. 707-712
-
-
Wang, X.B.1
Wu, L.Y.2
Wang, Y.C.3
Deng, N.Y.4
-
15
-
-
79951510489
-
Prediction and analysis of protein palmitoylation sites
-
Hu LL, Wan SB, Niu S, Shi XH, Li HP, et al. (2011) Prediction and analysis of protein palmitoylation sites. Biochimie 93: 489-496.
-
(2011)
Biochimie
, vol.93
, pp. 489-496
-
-
Hu, L.L.1
Wan, S.B.2
Niu, S.3
Shi, X.H.4
Li, H.P.5
-
16
-
-
84874023242
-
The prediction of palmitoylation site locations using a multiple feature extraction method
-
Shi SP, Sun XY, Qiu JD, Suo SB, Chen X, et al. (2013) The prediction of palmitoylation site locations using a multiple feature extraction method. J Mol Graph Model 40: 125-130.
-
(2013)
J Mol Graph Model
, vol.40
, pp. 125-130
-
-
Shi, S.P.1
Sun, X.Y.2
Qiu, J.D.3
Suo, S.B.4
Chen, X.5
-
17
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
DOI 10.1093/nar/gkg095
-
Boeckmann B, Bairoch A, Apweiler R, Blatter MC, Estreicher A, et al. (2003) The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res 31: 365-370. (Pubitemid 36157284)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.-C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
Pilbout, S.11
Schneider, M.12
-
18
-
-
33646899047
-
Global Analysis of Protein Palmitoylation in Yeast
-
DOI 10.1016/j.cell.2006.03.042, PII S0092867406005150
-
Roth AF, Wan J, Bailey AO, Sun B, Kuchar JA, et al. (2006) Global analysis of protein palmitoylation in yeast. Cell 125: 1003-1013. (Pubitemid 43795188)
-
(2006)
Cell
, vol.125
, Issue.5
, pp. 1003-1013
-
-
Roth, A.F.1
Wan, J.2
Bailey, A.O.3
Sun, B.4
Kuchar, J.A.5
Green, W.N.6
Phinney, B.S.7
Yates III, J.R.8
Davis, N.G.9
-
19
-
-
84875246715
-
Identification of a novel prenyl and palmitoyl modification at the CaaX motif of Cdc42 that regulates RhoGDI binding
-
Nishimura A, Linder ME (2013) Identification of a novel prenyl and palmitoyl modification at the CaaX motif of Cdc42 that regulates RhoGDI binding. Mol Cell Biol 33: 1417-1429.
-
(2013)
Mol Cell Biol
, vol.33
, pp. 1417-1429
-
-
Nishimura, A.1
Linder, M.E.2
-
20
-
-
84880078204
-
In silico screening for palmitoyl substrates reveals a role for DHHC1/3/10 (zDHHC1/3/11)-mediated neurochondrin palmitoylation in its targeting to Rab5-positive endosomes
-
Oku S, Takahashi N, Fukata Y, Fukata M (2013) In silico screening for palmitoyl substrates reveals a role for DHHC1/3/10 (zDHHC1/3/11)-mediated neurochondrin palmitoylation in its targeting to Rab5-positive endosomes. J Biol Chem 288: 19816-19829.
-
(2013)
J Biol Chem
, vol.288
, pp. 19816-19829
-
-
Oku, S.1
Takahashi, N.2
Fukata, Y.3
Fukata, M.4
-
21
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
22
-
-
0035072551
-
Clustering of highly homologous sequences to reduce the size of large protein databases
-
Li W, Jaroszewski L, Godzik A (2001) Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics 17: 282-283. (Pubitemid 32288218)
-
(2001)
Bioinformatics
, vol.17
, Issue.3
, pp. 282-283
-
-
Li, W.1
Jaroszewski, L.2
Godzik, A.3
-
23
-
-
0036169928
-
Tolerating some redundancy significantly speeds up clustering of large protein databases
-
Li W, Jaroszewski L, Godzik A (2002) Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics 18: 77-82. (Pubitemid 34145034)
-
(2002)
Bioinformatics
, vol.18
, Issue.1
, pp. 77-82
-
-
Li, W.1
Jaroszewski, L.2
Godzik, A.3
-
24
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
DOI 10.1093/bioinformatics/btl158
-
Li W, Godzik A (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659. (Pubitemid 43985301)
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
25
-
-
41149178980
-
A careful disorderliness in the proteome: Sites for interaction and targets for future therapies
-
Russell RB, Gibson TJ (2008) A careful disorderliness in the proteome: sites for interaction and targets for future therapies. FEBS Lett 582: 1271-1275.
-
(2008)
FEBS Lett
, vol.582
, pp. 1271-1275
-
-
Russell, R.B.1
Gibson, T.J.2
-
26
-
-
2342473198
-
The importance of intrinsic disorder for protein phosphorylation
-
DOI 10.1093/nar/gkh253
-
Iakoucheva LM, Radivojac P, Brown CJ, O'Connor TR, Sikes JG, et al. (2004) The importance of intrinsic disorder for protein phosphorylation. Nucleic Acids Res 32: 1037-1049. (Pubitemid 38854704)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.3
, pp. 1037-1049
-
-
Iakoucheva, L.M.1
Radivojac, P.2
Brown, C.J.3
O'Connor, T.R.4
Sikes, J.G.5
Obradovic, Z.6
Dunker, A.K.7
-
28
-
-
30344485673
-
Exploiting heterogeneous sequence properties improves prediction of protein disorder
-
DOI 10.1002/prot.20735
-
Obradovic Z, Peng K, Vucetic S, Radivojac P, Dunker AK (2005) Exploiting heterogeneous sequence properties improves prediction of protein disorder. Proteins 61 Suppl 7: 176-182. (Pubitemid 43069972)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.61
, Issue.SUPPL. 7
, pp. 176-182
-
-
Obradovic, Z.1
Peng, K.2
Vucetic, S.3
Radivojac, P.4
Bunker, A.K.5
-
29
-
-
33745289067
-
Length-dependent prediction of protein intrinsic disorder
-
Peng K, Radivojac P, Vucetic S, Dunker AK, Obradovic Z (2006) Length-dependent prediction of protein intrinsic disorder. BMC Bioinformatics 7: 208.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 208
-
-
Peng, K.1
Radivojac, P.2
Vucetic, S.3
Dunker, A.K.4
Obradovic, Z.5
-
30
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT (1999) Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 292: 195-202.
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
32
-
-
0035957531
-
A novel method of protein secondary structure prediction with high segment overlap measure: Support vector machine approach
-
DOI 10.1006/jmbi.2001.4580
-
Hua S, Sun Z (2001) A novel method of protein secondary structure prediction with high segment overlap measure: support vector machine approach. J Mol Biol 308: 397-407. (Pubitemid 33043577)
-
(2001)
Journal of Molecular Biology
, vol.308
, Issue.2
, pp. 397-407
-
-
Hua, S.1
Sun, Z.2
-
33
-
-
8844219516
-
Prediction of phosphorylation sites using SVMs
-
DOI 10.1093/bioinformatics/bth382
-
Kim JH, Lee J, Oh B, Kimm K, Koh I (2004) Prediction of phosphorylation sites using SVMs. Bioinformatics 20: 3179-3184. (Pubitemid 39619207)
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3179-3184
-
-
Kim, J.H.1
Lee, J.2
Oh, B.3
Kimm, K.4
Koh, I.5
-
34
-
-
33646852452
-
Prediction of mitochondrial proteins using support vector machine and hidden Markov model
-
DOI 10.1074/jbc.M511061200
-
Kumar M, Verma R, Raghava GP (2006) Prediction of mitochondrial proteins using support vector machine and hidden Markov model. J Biol Chem 281: 5357-5363. (Pubitemid 43847629)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.9
, pp. 5357-5363
-
-
Kumar, M.1
Verma, R.2
Raghava, G.P.S.3
-
35
-
-
38649127567
-
Identification of DNA-binding proteins using support vector machines and evolutionary profiles
-
Kumar M, Gromiha MM, Raghava GP (2007) Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC Bioinformatics 8: 463.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 463
-
-
Kumar, M.1
Gromiha, M.M.2
Raghava, G.P.3
-
37
-
-
0002714543
-
Making large-Scale SVM Learning Practical
-
B. Scholkopf and C. Burges and A. Smola (ed.), MIT-Press
-
Joachims T (1999) Making large-Scale SVM Learning Practical. Advances in Kernel Methods - Support Vector Learning, B. Scholkopf and C. Burges and A. Smola (ed.), MIT-Press.
-
(1999)
Advances in Kernel Methods - Support Vector Learning
-
-
Joachims, T.1
-
39
-
-
3843117638
-
Predicting protein structural class by functional domain composition
-
Chou KC, Cai YD (2004) Predicting protein structural class by functional domain composition. Biochem Biophys Res Commun 321: 1007-1009.
-
(2004)
Biochem Biophys Res Commun
, vol.321
, pp. 1007-1009
-
-
Chou, K.C.1
Cai, Y.D.2
-
40
-
-
79951518208
-
Some remarks on protein attribute prediction and pseudo amino acid composition
-
Chou KC (2011) Some remarks on protein attribute prediction and pseudo amino acid composition. J Theor Biol 273: 236-247.
-
(2011)
J Theor Biol
, vol.273
, pp. 236-247
-
-
Chou, K.C.1
-
41
-
-
21244494076
-
Using pseudo amino acid composition to predict protein subcellular location: Approached with Lyapunov index, Bessel function, and Chebyshev filter
-
DOI 10.1007/s00726-005-0206-9
-
Gao Y, Shao S, Xiao X, Ding Y, Huang Y, et al. (2005) Using pseudo amino acid composition to predict protein subcellular location: approached with Lyapunov index, Bessel function, and Chebyshev filter. Amino Acids 28: 373-376. (Pubitemid 40884727)
-
(2005)
Amino Acids
, vol.28
, Issue.4
, pp. 373-376
-
-
Gao, Y.1
Shao, S.2
Xiao, X.3
Ding, Y.4
Huang, Y.5
Huang, Z.6
Chou, K.-C.7
-
43
-
-
0037233515
-
Subcellular location prediction of apoptosis proteins
-
Zhou GP, Doctor K (2003) Subcellular location prediction of apoptosis proteins. Proteins 50: 44-48.
-
(2003)
Proteins
, vol.50
, pp. 44-48
-
-
Zhou, G.P.1
Doctor, K.2
-
44
-
-
29244482784
-
Predicting membrane protein type by functional domain composition and pseudo-amino acid composition
-
Cai YD, Chou KC (2006) Predicting membrane protein type by functional domain composition and pseudo-amino acid composition. J Theor Biol 238: 395-400.
-
(2006)
J Theor Biol
, vol.238
, pp. 395-400
-
-
Cai, Y.D.1
Chou, K.C.2
-
45
-
-
34548606295
-
Recent progress in protein subcellular location prediction
-
Chou KC, Shen HB (2007) Recent progress in protein subcellular location prediction. Anal Biochem 370: 1-16.
-
(2007)
Anal Biochem
, vol.370
, pp. 1-16
-
-
Chou, K.C.1
Shen, H.B.2
-
46
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews BW (1975) Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta 405: 442-451.
-
(1975)
Biochim Biophys Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
47
-
-
84883644210
-
The VHSE-Based Prediction of Proteosomal Cleavage Sites
-
Xie J, Xu Z, Zhou S, Pan X, Cai S, et al. (2013) The VHSE-Based Prediction of Proteosomal Cleavage Sites. PLoS One 8: e74506.
-
(2013)
PLoS One
, vol.8
-
-
Xie, J.1
Xu, Z.2
Zhou, S.3
Pan, X.4
Cai, S.5
-
48
-
-
84873575437
-
iSNO-PseAAC: Predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition
-
Xu Y, Ding J, Wu LY, Chou KC (2013) iSNO-PseAAC: predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition. PLoS One 8: e55844.
-
(2013)
PLoS One
, vol.8
-
-
Xu, Y.1
Ding, J.2
Wu, L.Y.3
Chou, K.C.4
-
49
-
-
84891464661
-
Correlation between Posttranslational modification and intrinsic disorder in protein
-
Gao J, Xu D (2011) Correlation between Posttranslational modification and intrinsic disorder in protein. Biocomputing 2012: 94-103.
-
(2011)
Biocomputing
, vol.2012
, pp. 94-103
-
-
Gao, J.1
Xu, D.2
-
50
-
-
25444524842
-
PSSM-based prediction of DNA binding sites in proteins
-
Ahmad S, Sarai A (2005) PSSM-based prediction of DNA binding sites in proteins. BMC Bioinformatics 6: 33.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 33
-
-
Ahmad, S.1
Sarai, A.2
-
51
-
-
84879259855
-
Prediction and Analysis of Post-Translational Pyruvoyl Residue Modification Sites from Internal Serines in Proteins
-
Jiang Y, Li B-Q, Zhang Y, Feng Y-M, Gao Y-F, et al. (2013) Prediction and Analysis of Post-Translational Pyruvoyl Residue Modification Sites from Internal Serines in Proteins. PLoS One 8: e66678.
-
(2013)
PLoS One
, vol.8
-
-
Jiang, Y.1
Li, B.-Q.2
Zhang, Y.3
Feng, Y.-M.4
Gao, Y.-F.5
-
53
-
-
0026570927
-
In vivo differential prenylation of retinal cyclic GMP phosphodiesterase catalytic subunits
-
Anant JS, Ong OC, Xie HY, Clarke S, O'Brien PJ, et al. (1992) In vivo differential prenylation of retinal cyclic GMP phosphodiesterase catalytic subunits. J Biol Chem 267: 687-690.
-
(1992)
J Biol Chem
, vol.267
, pp. 687-690
-
-
Anant, J.S.1
Ong, O.C.2
Xie, H.Y.3
Clarke, S.4
O'Brien, P.J.5
|