The mechanism of RNA binding to TRAP: Initiation and cooperative interactions

RNA

Volumn 7, Issue 1, 2001, Pages 85-93

  Elliott, M B ^a   Gottlieb, P A ^a   Gollnick, P ^a  

^a UNIVERSITY AT BUFFALO   (United States)

Author keywords

2 OH; Base analogs; Gene regulation; RNA protein interactions; Trinucleotide repeats; Tryptophan

Indexed keywords

GUANOSINE; HYDROGEN; MESSENGER RNA; OLIGONUCLEOTIDE; PROTEIN SUBUNIT; TRYPTOPHAN;

AMINO ACID TRANSPORT; ARTICLE; BACILLUS SUBTILIS; BINDING SITE; GENE CONTROL; HYDROGEN BOND; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; TRANSLATION INITIATION;

5' UNTRANSLATED REGIONS; BACILLUS SUBTILIS; BACTERIAL PROTEINS; BASE SEQUENCE; CALCIUM CHANNELS; ESCHERICHIA COLI; KINETICS; MOLECULAR SEQUENCE DATA; OLIGORIBONUCLEOTIDES; RECOMBINANT PROTEINS; RNA, BACTERIAL; RNA, MESSENGER; TRPC CATION CHANNELS;

BACILLUS SUBTILIS;

EID: 0035032449     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S135583820100173X     Document Type: Article

References (32)

1. 11-fold symmetry of the trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis determined by X-ray analysis
2. The structure of trp RNA-binding attenuation protein
3. Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA
4. Regulation of tryptophan biosynthesis: Trp-ing the TRAP or how Bacillus subtilis reinvented the wheel
5. TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a toroid-shaped molecule that binds transcripts containing GAG or UAG repeats separated by two nucleotides
6. TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a multi-subunit complex that appears to recognize G/UAG repeats in the trpEDCFBA and trpG transcripts
7. Interaction of the trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis with RNA: Effects of the number of GAG repeats, the nucleotides separating adjacent repeats, and RNA secondary structure
8. The role of 2′-hydroxyl groups in an RNA-protein interaction
9. Kinetic and thermodynamic analysis of the interaction between TRAP (trp RNA-binding attenuation protein) of Bacillus subtilis and trp leader RNA
10. The trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis binds to unstacked trp leader RNA
11. Regulatory features of the trp operon and the crystal structure of the trp RNA-binding attenuation protein from Bacillus stearothermophilus
12. Using modified nucleotides to map the DNA determinants of the Tus-TerB complex, the protein-DNA interaction associated with termination of replication in Escherichia coli
13. trp RNA-binding attenuation protein-mediated long distance RNA refolding regulates translation of trpE in Bacillus subtilis
14. Probing the TRAP-RNA interaction with nucleoside analogs
15. Relationships between apparent binding energies measured in site-directed mutagenesis experiments and energetics of binding and catalysis
16. Regulation of the Bacillus subtilis trp operon by an RNA-binding protein
17. cis-Acting sites in the transcript of the Bacillus subtilis trp operon regulate expression of the operon
18. The energetic basis of specificity in the EcoRI endonuclease - DNA interaction
19. Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure
20. Interactions between the trp repressor and its operator sequence as studied by base analogue substitution
21. trp RNA-binding attenuation protein (TRAP)-trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon
22. Functional contacts of a transfer RNA synthetase with 2′-hydroxyl groups in the RNA minor groove
23. A Bacillus subtilis gene of previously unknown function, yhaG, is translationally regulated by tryptophan-activated TRAP and appears to be involved in tryptophan transport
24. A Bacillus subtilis operon of previously unknown function senses tRNA-trp charging and regulates expression of the genes of tryptophan biosynthesis
25. Moieties in an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase
26. An apparent Bacillus subtilis folic acid biosynthetic operon containing pab, an amphibolic trpG gene, a third gene required for synthesis of para-aminobenzoic acid, and the dihydropteroate synthase gene
27. RNA structure inhibits the TRAP (trp RNA-binding Attenuation Protein) - RNA interaction
28. Alanine-scanning mutagenesis of Bacillus subtilis trp RNA-binding attenuation protein (TRAP) reveals residues involved in tryptophan binding and RNA binding
29. Translation of trpG in Bacillus subtilis is regulated by the trp RNA-binding attenuation protein (TRAP)
30. Thermodynamic and alkylation interference analysis of the lac repressor-operator substituted with the analogue 7-deazaguanine
31. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide