-
1
-
-
29144475324
-
Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis
-
Gollnick,P., Babitzke,P., Antson,A. and Yanofsky,C. (2005) Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis. Annu. Rev. Genet., 39, 47-68.
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 47-68
-
-
Gollnick, P.1
Babitzke, P.2
Antson, A.3
Yanofsky, C.4
-
2
-
-
0003221794
-
-
Sonenshein,A.L., Hoch,J.A. and Losick,R. (eds), ASM Press, Washington DC
-
Gollnick,P., Babitzke,P., Merino,E. and Yanofsky,C. (2002) In Sonenshein,A.L., Hoch,J.A. and Losick,R. (eds), Bacillus subtilis and its Closest Relatives. ASM Press, Washington DC, pp. 233-244.
-
(2002)
Bacillus Subtilis and Its Closest Relatives
, pp. 233-244
-
-
Gollnick, P.1
Babitzke, P.2
Merino, E.3
Yanofsky, C.4
-
3
-
-
77951565527
-
Mechanism of NusG-stimulated pausing, hairpin-dependent pause site selection and intrinsic termination at overlapping pause and termination sites in the Bacillus subtilis trp leader
-
Yakhnin,A.V. and Babitzke,P. (2010) Mechanism of NusG-stimulated pausing, hairpin-dependent pause site selection and intrinsic termination at overlapping pause and termination sites in the Bacillus subtilis trp leader. Mol. Microbiol., 76, 690-705.
-
(2010)
Mol. Microbiol.
, vol.76
, pp. 690-705
-
-
Yakhnin, A.V.1
Babitzke, P.2
-
4
-
-
0025254630
-
The mtr locus is a two gene operon required for transcription attenuation in the trp operon of Bacillus subtilis
-
Gollnick,P., Ishino,S., Kuroda,M.I., Henner,D. and Yanofsky,C. (1990) The mtr locus is a two gene operon required for transcription attenuation in the trp operon of Bacillus subtilis. Proc. Natl Acad. Sci. USA, 87, 8726-8730.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 8726-8730
-
-
Gollnick, P.1
Ishino, S.2
Kuroda, M.I.3
Henner, D.4
Yanofsky, C.5
-
5
-
-
0028964336
-
The structure of trp RNA-binding attenuation protein
-
Antson,A.A., Otridge,J., Brzozowski,A.M., Dodson,E.J., Dodson,G.G., Wilson,K.S., Smith,T.M., Yang,M., Kurecki,T. and Gollnick,P. (1995) The structure of trp RNA-binding attenuation protein. Nature, 374, 693-700.
-
(1995)
Nature
, vol.374
, pp. 693-700
-
-
Antson, A.A.1
Otridge, J.2
Brzozowski, A.M.3
Dodson, E.J.4
Dodson, G.G.5
Wilson, K.S.6
Smith, T.M.7
Yang, M.8
Kurecki, T.9
Gollnick, P.10
-
6
-
-
0027509047
-
MtrB from Bacillus subtilis binds specifically to trp leader RNA in a tryptophan dependent manner
-
Otridge,J. and Gollnick,P. (1993) MtrB from Bacillus subtilis binds specifically to trp leader RNA in a tryptophan dependent manner. Proc. Natl Acad. Sci. USA, 90, 128-132.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 128-132
-
-
Otridge, J.1
Gollnick, P.2
-
7
-
-
0029150031
-
TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis is a toroid shapped molecule that binds transcripts containing GAG or UAG repeats separated by two nucleotides
-
Babitzke,P., Bear,D.G. and Yanofsky,C. (1995) TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis is a toroid shapped molecule that binds transcripts containing GAG or UAG repeats separated by two nucleotides. Proc. Natl Acad. Sci. USA, 92, 7916-7920.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 7916-7920
-
-
Babitzke, P.1
Bear, D.G.2
Yanofsky, C.3
-
8
-
-
0027458419
-
Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein
-
Babitzke,P. and Yanofsky,C. (1993) Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein. Proc. Natl Acad. Sci. USA, 90, 133-137.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 133-137
-
-
Babitzke, P.1
Yanofsky, C.2
-
9
-
-
1842715585
-
Forward translocation is the natural pathway of RNA release at an intrinsic terminator
-
Santangelo,T.J. and Roberts,J.W. (2004) Forward translocation is the natural pathway of RNA release at an intrinsic terminator. Mol. Cell, 14, 117-126.
-
(2004)
Mol. Cell
, vol.14
, pp. 117-126
-
-
Santangelo, T.J.1
Roberts, J.W.2
-
10
-
-
34250166166
-
The rate of TRAP binding to RNA is crucial for transcription attenuation control of the B. subtilis trp operon
-
Barbolina,M.V., Kristoforov,R., Manfredo,A., Chen,Y. and Gollnick,P. (2007) The rate of TRAP binding to RNA is crucial for transcription attenuation control of the B. subtilis trp operon. J. Mol. Biol., 370, 925-938.
-
(2007)
J. Mol. Biol.
, vol.370
, pp. 925-938
-
-
Barbolina, M.V.1
Kristoforov, R.2
Manfredo, A.3
Chen, Y.4
Gollnick, P.5
-
11
-
-
0029120844
-
Translation of trpG in Bacillus subtilis is regulated by the trp RNA-binding Attenuation protein (TRAP)
-
Yang,M., de Saizieu,A., van Loon,A.P.G.M. and Gollnick,P. (1995) Translation of trpG in Bacillus subtilis is regulated by the trp RNA-binding Attenuation protein (TRAP). J. Bacteriol., 177, 4272-4278.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4272-4278
-
-
Yang, M.1
De Saizieu, A.2
Van Loon, A.P.G.M.3
Gollnick, P.4
-
12
-
-
0001134202
-
Requirements for Transformation in Bacillus subtilis
-
Anagnostopoulos,C. and Spizizen,J. (1961) Requirements for Transformation in Bacillus subtilis. J. Bacteriol., 81, 741-746.
-
(1961)
J. Bacteriol.
, vol.81
, pp. 741-746
-
-
Anagnostopoulos, C.1
Spizizen, J.2
-
13
-
-
77049313195
-
Acetylornithinase of Escherichia coli: Partial purification and some properties
-
Vogel,H.J. and Bonner,D.M. (1956) Acetylornithinase of Escherichia coli: partial purification and some properties. J. Biol. Chem., 218, 97-106.
-
(1956)
J. Biol. Chem.
, vol.218
, pp. 97-106
-
-
Vogel, H.J.1
Bonner, D.M.2
-
14
-
-
0003547837
-
Integrational vectors for genetic manipulation in Bacillus subtilis and other gram-positive bacteria
-
Hoch,J.A., Sonenshein,A.L. and Losick,R. (eds), American Society for Microbiology, Washington, DC
-
Perego,M. (1993) Integrational vectors for genetic manipulation in Bacillus subtilis and other gram-positive bacteria. In Hoch,J.A., Sonenshein,A.L. and Losick,R. (eds), Bacillus subtilis and other gram-positive bacteria. American Society for Microbiology, Washington, DC.
-
(1993)
Bacillus Subtilis and Other Gram-positive Bacteria
-
-
Perego, M.1
-
15
-
-
0022445885
-
Construction of a single-copy integration vector and its use in analysis of regulation of the trp operon of Bacillus subtilis
-
Shimotsu,H. and Henner,D.J. (1986) Construction of a single-copy integration vector and its use in analysis of regulation of the trp operon of Bacillus subtilis. Gene, 43, 85-94. (Pubitemid 16011528)
-
(1986)
Gene
, vol.43
, Issue.1-2
, pp. 85-94
-
-
Shimotsu, H.1
Henner, D.J.2
-
16
-
-
0028063588
-
Eleven-fold symmetry of the trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis determined by X-ray analysis
-
Antson,A.A., Brzozowski,A.M., Dodson,E.J., Dauter,Z., Wilson,K.S., Kurecki,T. and Gollnick,P. (1994) Eleven-fold symmetry of the trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis determined by X-ray analysis. J. Mol. Biol., 244, 1-5.
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 1-5
-
-
Antson, A.A.1
Brzozowski, A.M.2
Dodson, E.J.3
Dauter, Z.4
Wilson, K.S.5
Kurecki, T.6
Gollnick, P.7
-
17
-
-
0024379261
-
Glu-111 is required for activation of the DNA cleavage center of EcoRI endonuclease
-
King,K., Benkovic,S.J. and Modrich,P. (1989) Glu-111 is required for activation of the DNA cleavage center of EcoRI endonuclease. J. Biol. Chem., 264, 11807-11815.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 11807-11815
-
-
King, K.1
Benkovic, S.J.2
Modrich, P.3
-
18
-
-
0003785155
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
-
Miller,J.H. (1972) Experiments in Molecular Genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
-
19
-
-
0041757737
-
Role of RNA Structure in Transcription Attenuation in Bacillus subtilis: The trpEDCFBA Operon as a Model System
-
DOI 10.1016/S0076-6879(03)71030-1
-
Babitzke,P., Schaak,J., Yakhnin,A.V. and Bevilacqua,P.C. (2003) Role of RNA structure in transcription attenuation in Bacillus subtilis: the trpEDCFBA operon as a model system. Methods Enzymol., 371, 392-404. (Pubitemid 37542746)
-
(2003)
Methods in Enzymology
, vol.371
, pp. 392-404
-
-
Babitzke, P.1
Schaak, J.2
Yakhnin, A.V.3
Bevilacqua, P.C.4
-
20
-
-
10044241881
-
Bacillus subtilis TRAP binds to its RNA target by a 50 to 30 directional mechanism
-
Barbolina,M.V., Li,X. and Gollnick,P. (2005) Bacillus subtilis TRAP binds to its RNA target by a 50 to 30 directional mechanism. J. Mol. Biol., 345, 667-679.
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 667-679
-
-
Barbolina, M.V.1
Li, X.2
Gollnick, P.3
-
21
-
-
0025663103
-
Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures
-
d'Aubenton Carafa,Y., Brody,E. and Thermes,C. (1990) Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures. J. Mol. Biol., 216, 835-858.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 835-858
-
-
D'Aubenton Carafa, Y.1
Brody, E.2
Thermes, C.3
-
22
-
-
0033597435
-
Mechanism of intrinsic transcription termination and antitermination
-
DOI 10.1126/science.284.5414.611
-
Yarnell,W.S. and Roberts,J.W. (1999) Mechanism of intrinsic transcription termination and antitermination. Science, 284, 611-615. (Pubitemid 29289580)
-
(1999)
Science
, vol.284
, Issue.5414
, pp. 611-615
-
-
Yarnell, W.S.1
Roberts, J.W.2
-
23
-
-
0033120034
-
The mechanism of intrinsic transcription termination
-
Gusarov,I. and Nudler,E. (1999) The mechanism of intrinsic transcription termination. Mol. Cell, 3, 495-504.
-
(1999)
Mol. Cell
, vol.3
, pp. 495-504
-
-
Gusarov, I.1
Nudler, E.2
-
24
-
-
0022570121
-
Novel form of transcription attenuation regulates expression of the Bacillus subtilis tryptophan operon
-
Shimotsu,H., Kuroda,M.I., Yanofsky,C. and Henner,D.J. (1986) Novel form of transcription attenuation regulates expression of the Bacillus subtilis tryptophan operon. J. Bacteriol., 166, 461-471. (Pubitemid 16112143)
-
(1986)
Journal of Bacteriology
, vol.166
, Issue.2
, pp. 461-471
-
-
Shimotsu, H.1
Kuroda, M.I.2
Yanofsky, C.3
Henner, D.J.4
-
25
-
-
0028871292
-
trp RNA-binding attenuation protein (TRAP)-trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon
-
Merino,E., Babitzke,P. and Yanofsky,C. (1995) trp RNA-binding attenuation protein (TRAP)-trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon. J. Bacteriol., 177, 6362-6370.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6362-6370
-
-
Merino, E.1
Babitzke, P.2
Yanofsky, C.3
-
26
-
-
0037143667
-
NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism in vitro
-
Yakhnin,A.V. and Babitzke,P. (2002) NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism in vitro. Proc. Natl Acad. Sci. USA, 99, 11067-11072.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 11067-11072
-
-
Yakhnin, A.V.1
Babitzke, P.2
-
27
-
-
12344255940
-
Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene
-
Grundy,F.J., Yousef,M.R. and Henkin,T.M. (2005) Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene. J. Mol. Biol., 346, 73-81.
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 73-81
-
-
Grundy, F.J.1
Yousef, M.R.2
Henkin, T.M.3
-
28
-
-
0025309753
-
Elongation by Escherichia coli RNA polymerase is blocked in vitro by a site-specific DNA binding protein
-
Pavco,P.A. and Steege,D.A. (1990) Elongation by Escherichia coli RNA polymerase is blocked in vitro by a site-specific DNA binding protein. J. Biol. Chem., 265, 9960-9969.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 9960-9969
-
-
Pavco, P.A.1
Steege, D.A.2
-
29
-
-
1842610540
-
Mfd, the bacterial transcription repair coupling factor: Translocation, repair and termination
-
Roberts,J. and Park,J.S. (2004) Mfd, the bacterial transcription repair coupling factor: translocation, repair and termination. Curr. Opin. Microbiol., 7, 120-125.
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 120-125
-
-
Roberts, J.1
Park, J.S.2
-
30
-
-
55449129670
-
Prediction of transcriptional terminators in Bacillus subtilis and related species
-
de Hoon,M.J., Makita,Y., Nakai,K. and Miyano,S. (2005) Prediction of transcriptional terminators in Bacillus subtilis and related species. PLoS Comput. Biol., 1, e25.
-
(2005)
PLoS Comput. Biol.
, vol.1
-
-
De Hoon, M.J.1
Makita, Y.2
Nakai, K.3
Miyano, S.4
-
31
-
-
0033986936
-
Transcription attenuation: Once viewed as a novel regulatory strategy
-
Yanofsky,C. (2000) Transcription attenuation: once viewed as a novel regulatory strategy. J. Bacteriol., 182, 1-8.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1-8
-
-
Yanofsky, C.1
-
32
-
-
63849299263
-
Biochemical features and functional implications of the RNA-based T-box regulatory mechanism
-
Gutierrez-Preciado,A., Henkin,T.M., Grundy,F.J., Yanofsky,C. and Merino,E. (2009) Biochemical features and functional implications of the RNA-based T-box regulatory mechanism. Microbiol. Mol. Biol. Rev., 73, 36-61.
-
(2009)
Microbiol. Mol. Biol. Rev.
, vol.73
, pp. 36-61
-
-
Gutierrez-Preciado, A.1
Henkin, T.M.2
Grundy, F.J.3
Yanofsky, C.4
Merino, E.5
-
33
-
-
0001562527
-
-
Neidhardt,F.C. (ed.), 2nd edn. ASM Press, Washington DC
-
Landick,R., Turnbough,C.L. and Yanofsky,C. (1996) In Neidhardt,F.C. (ed.), Escherichia coli and Salmonella Cellular and Molecular Biology, 2nd edn. ASM Press, Washington DC, pp. 1263-1286.
-
(1996)
Escherichia Coli and Salmonella Cellular and Molecular Biology
, pp. 1263-1286
-
-
Landick, R.1
Turnbough, C.L.2
Yanofsky, C.3
-
34
-
-
1642500118
-
Regulation of the Tryptophan Biosynthetic Genes in Bacillus halodurans: Common Elements but Different Strategies Than Those Used by Bacillus subtilis
-
DOI 10.1128/JB.186.3.818-828.2004
-
Szigeti,R., Milescu,M. and Gollnick,P. (2004) Regulation of the tryptophan biosynthetic genes in Bacillus halodurans: common elements but different strategies than those used by Bacillus subtilis. J. Bacteriol., 186, 818-828. (Pubitemid 38129661)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.3
, pp. 818-828
-
-
Szigeti, R.1
Milescu, M.2
Gollnick, P.3
-
35
-
-
40749096382
-
Applied Force Reveals Mechanistic and Energetic Details of Transcription Termination
-
DOI 10.1016/j.cell.2008.01.027, PII S009286740800127X
-
Larson,M.H., Greenleaf,W.J., Landick,R. and Block,S.M. (2008) Applied force reveals mechanistic and energetic details of transcription termination. Cell, 132, 971-982. (Pubitemid 351381740)
-
(2008)
Cell
, vol.132
, Issue.6
, pp. 971-982
-
-
Larson, M.H.1
Greenleaf, W.J.2
Landick, R.3
Block, S.M.4
-
36
-
-
0344413496
-
The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination
-
Toulokhonov,I. and Landick,R. (2003) The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination. Mol. Cell, 12, 1125-1136.
-
(2003)
Mol. Cell
, vol.12
, pp. 1125-1136
-
-
Toulokhonov, I.1
Landick, R.2
-
37
-
-
33748767376
-
Rho-dependent terminators and transcription termination
-
Ciampi,M.S. (2006) Rho-dependent terminators and transcription termination. Microbiology, 152, 2515-2528.
-
(2006)
Microbiology
, vol.152
, pp. 2515-2528
-
-
Ciampi, M.S.1
|