-
1
-
-
84875181975
-
Global spread of antibiotic resistance: The example of New Delhi metallo-beta-lactamase (NDM)-mediated carbapenem resistance
-
Johnson AP, Woodford N. Global spread of antibiotic resistance: the example of New Delhi metallo-beta-lactamase (NDM)-mediated carbapenem resistance. J Med Microbiol 2013;62:499-513.
-
(2013)
J Med Microbiol
, vol.62
, pp. 499-513
-
-
Johnson, A.P.1
Woodford, N.2
-
2
-
-
71249134038
-
Characterization of a new metallo-beta-lactamase gene, bla(NDM-1), and a novel erythromycin esterase gene carried on a unique genetic structure in Klebsiella pneumoniae sequence type 14 from India
-
Yong D, Toleman MA, Giske CG, et al. Characterization of a new metallo-beta-lactamase gene, bla(NDM-1), and a novel erythromycin esterase gene carried on a unique genetic structure in Klebsiella pneumoniae sequence type 14 from India. Antimicrob Agents Chemother 2009;53:5046-5054.
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 5046-5054
-
-
Yong, D.1
Toleman, M.A.2
Giske, C.G.3
-
3
-
-
84930486688
-
Global spread of carbapenemaseproducing Enterobacteriaceae
-
Nordmann P, Naas T, Poirel L. Global spread of carbapenemaseproducing Enterobacteriaceae. Emerg Infect Dis 2011;17:1791-1798.
-
(2011)
Emerg Infect Dis
, vol.17
, pp. 1791-1798
-
-
Nordmann, P.1
Naas, T.2
Poirel, L.3
-
4
-
-
84865649027
-
NDM-1 and the role of travel in its dissemination
-
Wilson ME, Chen LH. NDM-1 and the role of travel in its dissemination. Curr Infect Dis Rep 2012;14:213-226.
-
(2012)
Curr Infect Dis Rep
, vol.14
, pp. 213-226
-
-
Wilson, M.E.1
Chen, L.H.2
-
5
-
-
77954442165
-
Detection of Enterobacteriaceae isolates carrying metallo-beta-lactamase: United States, 2010
-
Centers for Disease Control and Prevention
-
Centers for Disease Control and Prevention. Detection of Enterobacteriaceae isolates carrying metallo-beta-lactamase: United States, 2010. MMWR Morb Mortal Wkly Rep 2010;59: 750.
-
(2010)
MMWR Morb Mortal Wkly Rep
, vol.59
, pp. 750
-
-
-
11
-
-
78751594382
-
-
Centers for Disease Control and Prevention (CDC), Klebsiella spp. and E. coli from Rectal Swabs. Atlanta, Georgia: CDC, Accessed August 6, 2013
-
Centers for Disease Control and Prevention (CDC). Laboratory Protocol for Detection of Carbapenem-Resistant or Carbapenemase-Producing Klebsiella spp. and E. coli from Rectal Swabs. Atlanta, Georgia: CDC, 2011. http://www.cdc.gov/hai/pdfs /labsettings/klebsiella_or_ecoli.pdf. Accessed August 6, 2013.
-
(2011)
Laboratory Protocol for Detection of Carbapenem-Resistant or Carbapenemase-Producing
-
-
-
12
-
-
67749143997
-
Molecular epidemiology of KPC-producing Klebsiella pneumoniae isolates in the United States: Clonal expansion of multilocus sequence type 258
-
Kitchel B, Rasheed JK, Patel JB, et al. Molecular epidemiology of KPC-producing Klebsiella pneumoniae isolates in the United States: clonal expansion of multilocus sequence type 258. Antimicrob Agents Chemother 2009;53:3365-3370.
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 3365-3370
-
-
Kitchel, B.1
Rasheed, J.K.2
Patel, J.B.3
-
13
-
-
84895790127
-
-
kSNP 2.0 ed. Livermore, California: Lawrence Livermore National Lab, 2013
-
kSNP 2.0 ed. Livermore, California: Lawrence Livermore National Lab, 2013.
-
-
-
-
14
-
-
84891935788
-
When whole-genome alignments just won't work: KSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes
-
Gardner SN, Hall BG. When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes. PLOS ONE 2013;8(12):e81760.
-
(2013)
PLOS ONE
, vol.8
, Issue.12
-
-
Gardner, S.N.1
Hall, B.G.2
-
15
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009;25:1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
16
-
-
68549104404
-
The sequence alignment/ map (SAM) format and SAMtools
-
Li H, Handsaker B, Wysoker A, et al. The sequence alignment/ map (SAM) format and SAMtools. Bioinformatics 2009;25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
17
-
-
84863229597
-
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
-
Koboldt D, Zhang Q, Larson D, et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 2012;22(3):568-576.
-
(2012)
Genome Res
, vol.22
, Issue.3
, pp. 568-576
-
-
Koboldt, D.1
Zhang, Q.2
Larson, D.3
-
19
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011;28:2731-2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
21
-
-
84869049412
-
Outbreak of carbapenem-resistant Enterobacteriaceae containing blaNDM-1, Ontario, Canada
-
Borgia S, Lastovetska O, Richardson D, et al. Outbreak of carbapenem-resistant Enterobacteriaceae containing blaNDM-1, Ontario, Canada. Clin Infect Dis 2012;55:e109-e117.
-
(2012)
Clin Infect Dis
, vol.55
-
-
Borgia, S.1
Lastovetska, O.2
Richardson, D.3
-
22
-
-
84870865993
-
Nosocomial transmission of New Delhi metallo-beta-lactamase-1-producing Klebsiella pneumoniae in Toronto, Canada
-
Lowe CF, Kus JV, Salt N, et al. Nosocomial transmission of New Delhi metallo-beta-lactamase-1-producing Klebsiella pneumoniae in Toronto, Canada. Infect Control Hosp Epidemiol 2013; 34:49-55.
-
(2013)
Infect Control Hosp Epidemiol
, vol.34
, pp. 49-55
-
-
Lowe, C.F.1
Kus, J.V.2
Salt, N.3
-
24
-
-
84870550060
-
-
Centers for Disease Control and Prevention (CDC), Atlanta, Georgia: CDC, Accessed August 6, 2013
-
Centers for Disease Control and Prevention (CDC). 2012 CRE Toolkit: Guidance for Control of Carbapenem-resistant Enterobacteriaceae (CRE). Atlanta, Georgia: CDC, 2012. http://www.cdc.gov/hai/organisms/cre/cre-toolkit/f-level-prevention.html. Accessed August 6, 2013.
-
(2012)
2012 CRE Toolkit: Guidance for Control of Carbapenem-resistant Enterobacteriaceae (CRE)
-
-
-
25
-
-
84865323065
-
Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing
-
Snitkin ES, Zelazny AM, Thomas PJ, et al. Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing. Sci Transl Med 2012;4:148ra16.
-
(2012)
Sci Transl Med
, vol.4
-
-
Snitkin, E.S.1
Zelazny, A.M.2
Thomas, P.J.3
-
26
-
-
84862199752
-
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
-
Koser CU, Holden MT, Ellington MJ, et al. Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. New Engl J Med 2012;366:2267-2275.
-
(2012)
New Engl J Med
, vol.366
, pp. 2267-2275
-
-
Koser, C.U.1
Holden, M.T.2
Ellington, M.J.3
-
27
-
-
77951297611
-
High-throughput wholegenome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak
-
Lewis T, Loman NJ, Bingle L, et al. High-throughput wholegenome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak. J Hosp Infect 2010; 75:37-41.
-
(2010)
J Hosp Infect
, vol.75
, pp. 37-41
-
-
Lewis, T.1
Loman, N.J.2
Bingle, L.3
-
28
-
-
84870885483
-
Anatomic sites of patient colonization and environmental contamination with Klebsiella pneumoniae carbapenemase-producing Enterobacteriaceae at long-term acute care hospitals
-
Thurlow CJ, Prabaker K, Lin MY, et al. Anatomic sites of patient colonization and environmental contamination with Klebsiella pneumoniae carbapenemase-producing Enterobacteriaceae at long-term acute care hospitals. Infect Control Hosp Epidemiol 2013;34:56-61.
-
(2013)
Infect Control Hosp Epidemiol
, vol.34
, pp. 56-61
-
-
Thurlow, C.J.1
Prabaker, K.2
Lin, M.Y.3
-
29
-
-
84879855909
-
Deconstructing the infection control bundles for the containment of carbapenem-resistant Enterobacteriaceae
-
Munoz-Price LS, Quinn JP. Deconstructing the infection control bundles for the containment of carbapenem-resistant Enterobacteriaceae. Curr Opin Infect Dis 2013;26:378-387.
-
(2013)
Curr Opin Infect Dis
, vol.26
, pp. 378-387
-
-
Munoz-Price, L.S.1
Quinn, J.P.2
-
30
-
-
0023092594
-
A new method of classifying prognostic comorbidity in longitudinal studies: Development and validation
-
Charlson ME, Pompei P, Ales KL, MacKenzie CR. A new method of classifying prognostic comorbidity in longitudinal studies: development and validation. J Chronic Dis 1987;40:373-383.
-
(1987)
J Chronic Dis
, vol.40
, pp. 373-383
-
-
Charlson, M.E.1
Pompei, P.2
Ales, K.L.3
McKenzie, C.R.4
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