Global gene expression responses to waterlogging in leaves of rape seedlings

Plant Cell Reports

Volumn 33, Issue 2, 2014, Pages 289-299

  Lee, Yong Hwa ^a   Kim, Kwang Soo ^a   Jang, Young Seok ^a   Hwang, Ji Hye ^b   Lee, Dong Hee ^b   Choi, In Hu ^a  

^a National Institute of Animal Science   (South Korea)

^b Ewha Womans University   (South Korea)

Author keywords

Photosynthesis; Rape seedling; ROS scavenging; Senescence; Transcriptome; Waterlogging stress

Indexed keywords

CHLOROPHYLL; REACTIVE OXYGEN METABOLITE; VEGETABLE PROTEIN; WATER;

ADAPTATION; ARTICLE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PHOTOSYNTHESIS; PHYSIOLOGICAL STRESS; PHYSIOLOGY; PLANT LEAF; PLANT ROOT; RAPESEED; SEEDLING;

ADAPTATION, PHYSIOLOGICAL; BRASSICA NAPUS; CHLOROPHYLL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; PHOTOSYNTHESIS; PLANT LEAVES; PLANT PROTEINS; PLANT ROOTS; REACTIVE OXYGEN SPECIES; SEEDLING; STRESS, PHYSIOLOGICAL; WATER;

EID: 84895071069     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-013-1529-8     Document Type: Article

References (41)

1. Ahsan N, Lee D-G, Lee S-H, Kang KY, Bahk JD, Choi MS, Lee I-J, Renaut J, Lee B-H (2007) A comparative proteomic analysis of tomato leaves in response to waterlogging stress. Physiol Plant 131: 555-570.
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
3. Apse MP, Sottosanto JB, Blumwald E (2003) Vacuolar cation/H+ exchange, ion homeostasis, and leaf development are altered in a T-DNA insertional mutant of AtNHX1, the Arabidopsis vacuolar Na+/H+ antiporter. Plant J 36: 229-239.
4. Asada K (2006) Production and scavenging of reactive oxygen species in chloroplasts and their functions. Plant Physiol 141: 391-396.
5. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
6. Bailey-Serres J, Chang R (2005) Sensing and signalling in response to oxygen deprivation in plants and other organisms. Ann Bot (Lond) 96: 507-518.
7. Boru G, Vantoai T, Alves J, Hua D, Knee M (2003) Responses of soybean to oxygen deficiency and elevated root-zone carbon dioxide concentration. Ann Bot 91: 447-453.
8. Branco-Price C, Kawaguchi R, Ferreira R, Bailey-Serres J (2005) Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation. Ann Bot 96: 647-660.
9. Camilo CM, Gomes SL (2010) Transcriptional response to hypoxia in the aquatic fungus Blastocladiella emersonii. Eukaryot Cell 9(6): 915-925.
10. Christianson JA, Llewellyn DJ, Dennis ES, Wilson IW (2010) Global gene expression responses to waterlogging in roots and leaves of cotton (Gossypium hirsutum L.). Plant Cell Physiol 51(1): 21-37.
11. Cominelli E, Galbiati M, Vavasseur A, Conti L, Sala T, Vuylsteke M, Leonhardt N, Dellaporta SL, Tonelli C (2005) A guard-cell-specific MYB transcription factor regulates stomatal movements and plant drought tolerance. Curr Biol 15: 1196-1200.
12. Cox MP, Peterson DA, Biggs PJ (2010) SolexaQA: at-a-glance quality assessment of Illumina second-generation sequencing data. BMC Bioinformatics 11: 485.
13. Desimone M, Henke A, Wagner E (1996) Oxidative stress induces partial degradation of the large subunit of ribulose-1, 5-bisphosphate carboxylase/oxygenase in isolated chloroplasts of Barley. Plant Physiol 111: 789-796.
14. Dolferus R, de Bruxelles GL, Dennis ES, Peacock WJ (1994) Regulation of the Arabidopsis Adh gene by anaerobic and other environmental stresses. Ann Bot 74: 301-308.
15. Drew MC (1997) Oxygen deficiency and root metabolism: injury and acclimation under hypoxia and anoxia. Annu Rev Plant Physiol Plant Mol Biol 48: 223-250.
16. Geigenberger P (2003) Response of plant metabolism to too little oxygen. Curr Opin Plant Biol 6(3): 247-256.
17. Henderson JN, Hazra S, Dunkle AM, Salvucci ME, Wachter RM (2013) Biophysical characterization of higher plant Rubisco activase. Biochim Biophys Acta 1834(1): 87-97.
18. Jackson MB (1990) Hormones and developmental change in plants subjected to submergence or soil waterlogging. Aquatic Bot 38: 49-72.
19. Klok EJ, Wilson IW, Wilson D, Chapman SC, Ewing RM, Somerville SC, Peacock WJ, Dolferus R, Dennis ES (2002) Expression profile analysis of the low-oxygen response in Arabidopsis root culture. Plant Cell 14: 2481-2494.
20. Kreuzwieser J, Hauberg J, Howell KA, Carroll A, Rennenberg H, Millar AH, Whelan J (2009) Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia. Plant Physiol 149: 461-473.
21. Ku Y-G, Park W, Bang J-K, Jang Y-S, Kim Y-B, Bae H-J, Suh M-C, Ahn S-J (2009) Physiological response, fatty acid composition and yield component of Brassica napus L. under short-term waterlogging. J Bio Environ Control 18(2): 142-147.
22. Kumar A, Taylor MA, Mad Arif SA, Davies HV (1996) Potato plants expressing antisense and sense S-adenosylmethionine decarboxylase (SAMDC) transgenes show altered levels of polyamines and ethylene: antisense plants display abnormal phenotypes. Plant J 9(2): 147-158.
23. Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
24. Lasanthi-Kudahettige R, Magneschi L, Loreti E, Gonzali S, Licausi F, Novi G, Beretta O, Vitulli F, Alpi A, Perata P (2007) Transcript profiling of the anoxic rice coleoptile. Plant Physiol 144: 218-231.
25. Le Provost G, Sulmon C, Frigerio JM, Bode′ne's C, Kremer A, Plomion C (2012) Role of waterlogging-responsive genes in shaping interspecific differentiation between two sympatric oak species. Tree Physiol 32: 119-134.
26. Liu F, Vantoai T, Moy L, Bock G, Linford LD, Quackenbush J (2005) Global transcription profiling reveals novel insights into hypoxic response in Arabidopsis. Plant Physiol 137: 1115-1129.
27. Manzur ME, Grimoldi AA, Insausti P, Striker GG (2009) Escape from water or remain quiescent? Lotus tenuis changes its strategy depending on depth of submergence. Ann Bot 104: 1163-1169.
28. McFarlane NM, Ciavarella TA, Smith K (2003) The effect of waterlogging on growth, photosynthesis and biomass allocation in perennial ryegrass (Lolium perenne L.) genotypes with contrasting root development. J Agric Sci 141: 241-248.
29. Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Method 5(7): 621-628.
30. Parent C, Capelli N, Berger A, Crèvecoeur M, Dat JF (2008) An overview of plant responses to soil waterlogging. Plant Stress 2: 20-27.
31. Prakash TR, Swamy PM, Suguna P, Reddanna P (1990) Characterization and behaviour of 15-lipoxygenase during peanut cotyledonary senescence. Biochem Biophys Res Commun 30(172): 462-470.
32. Roxas VP, Lodhi SA, Garrett DK, Mahan JR, Allen RD (2000) Stress tolerance in transgenic tobacco seedlings that overexpress glutathione S-transferase/glutathione peroxidase. Plant Cell Physiol 41(11): 1229-1234.
33. Shiu OY, Oetiker JH, Yip WK, Yang SF (1998) The promoter of LE-ACS7, an early flooding-induced 1-aminocyclopropane-1-carboxylate synthase gene of the tomato, is tagged by a Sol3 transposon. Proc Natl Acad Sci USA 95: 10334-10339.
34. Subbaiah CC, Sachs MM (2003) Molecular and cellular adaptations of maize to flooding stress. Ann Bot 90: 119-127.
35. Trought MCT, Drew MC (1980) The development of waterlogging damage in wheat seedlings (Triticum aestivum L.) I. Shoot and root growth in relation to changes in concentration of dissolved gases and solutes in the soil solutions. Plant Soil 54: 77-94.
36. van den Berg AK, Perkins TD (2004) Evaluation of a portable chlorophyll meter to estimate chlorophyll and nitrogen contents in sugar maple (Acer saccharum Marsh.) leaves. For Ecol Manage 200: 113-117.
37. Wang L, Zhang Y, Qi X, Li D, Wei W, Zhang X (2012) Global gene expression responses to waterlogging in roots of sesame (Sesamum indicum L.). Acta Physiol Plant 34: 2241-2249.
38. Yordanova RY, Popova LP (2001) Photosynthetic response of barley plants to soil flooding. Photosynthetica 39: 515-520.
39. Yordanova R, Christov K, Popova L (2004) Antioxidative enzymes in barley plants subjected to soil flooding. Environ Exp Bot 51: 93-101.
40. Zhang J, Davies WJ (1987) ABA in roots and leaves of flooded pea plants. J Exp Bot 38: 649-659.
41. Zhou W, Zhao D, Lin X (1997) Effects of waterlogging on nitrogen accumulation and alleviation of waterlogging damage by application of nitrogen fertilizer and mixtalol in winter rape (Brassica napus L.). J Plant Growth Regul 16: 47-53.