Effects of a novel cell stabilizing reagent on DNA amplification by PCR as compared to traditional stabilizing reagents

Acta Histochemica

Volumn 116, Issue 1, 2014, Pages 55-60

  Das, Kausik ^a   Fernando, M Rohan ^a   Basiaga, Sara ^b   Wigginton, Stephanie M ^a   Williams, Tom ^c  

^a Streck Inc   (United States)

^b UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^c Methodist Hospital   (United States)

Author keywords

Cell free DNA BCT reagent; DNA amplification; DNA fluorescence; Formaldehyde free stabilizing reagent

Indexed keywords

DNA; DYES, REAGENTS, INDICATORS, MARKERS AND BUFFERS; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE;

BLOOD SAMPLING; CHEMISTRY; GENETICS; HUMAN; LEUKOCYTE; PHYSIOLOGY; POLYMERASE CHAIN REACTION; SYNTHESIS;

BLOOD SPECIMEN COLLECTION; DNA; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASES; HUMANS; INDICATORS AND REAGENTS; LEUKOCYTES; POLYMERASE CHAIN REACTION;

EID: 84894901873     PISSN: 00651281     EISSN: 16180372     Source Type: Journal    
DOI: 10.1016/j.acthis.2013.05.002     Document Type: Article

References (28)

1. Ashoor G., Syngelaki A., Wagner M., Birdir C., Nicolaides K.H. Chromosome-selective sequencing of maternal plasma cell-free DNA for first-trimester detection of trisomy 21 and trisomy 18. Am J Obstet Gynecol 2012, 206:322e1-322e5.
2. Benchi A., Yamgnane A., Olivia M., Dumez Y., Gautier E., Costa J-M. Impact of formaldehyde on the in vitro proportion of fetal DNA in maternal plasma and serum. Clin Chem 2004, 51:242-244.
3. Chan K.C.A., Zhang J., Hui A.B.Y., Wong N., Lau T.K., Leung T.N., et al. Size distributions of maternal and fetal DNA in maternal plasma. Clin Chem 2004, 50:88-92.
4. Chaw Y.F.M., Crane L.E., Lange P., Shapiro R. Isolation and identification of cross-links from formaldehyde treated nucleic acids. Biochemistry 1980, 19:5525-5531.
5. Chiu R.W., Lo Y.M. The biology and diagnostic applications of fetal DNA and RNA in maternal plasma. Curr Top Dev Biol 2004, 81-111.
6. Das K., Dumais J., Basiaga S., Krzyzanowski G.D. Carbon-13 nuclear magnetic resonance analyses of formaldehyde free preservatives. Acta Histochem 2013, 115:481-486.
7. Devaney S.A., Palomaki G.E., Scott J.A., Bianchi D.W. Noninvasive fetal sex determination using cell-free fetal DNA. A systematic review and meta-analysis. JAMA 2011, 306:627-636.
8. Dhallan R., Au W.-C., Mattagajasingh S., Emche S., Bayliss P., Damewood M., et al. Methods to increase the percentage of free fetal DNA recovered from maternal circulation. JAMA 2004, 291:1114-1135.
9. Fernando M.R., Chen K., Norton S., Krzyzanowski G., Bourne D., Hunsley B., et al. A new methodology to preserve the original proportion and integrity of cell-free fetal DNA in maternal plasma during sample processing and storage. Prenat Diagn 2010, 30:418-424.
10. Gavrilov A., Razin S.V. Formaldehyde fixation of cells does not greatly reduce the ability to amplify cellular DNA. Anal Biochem 2009, 390:94-96.
11. Gordian E., Ramachandran K., Reis I.M., Manoharan M., Soloway M.S., Singal R. Serum free circulating DNA is a useful biomarker to distinguish benign versus malignant prostate disease. Cancer Epidemiol Biomarkers Prev 2010, 19:1984-1991.
12. Hidestrand M., Stokowski R., Song K., Oliphant A., Deavers J., Goetsch M., et al. Influence of temperature during transportation on cell-free DNA analysis. Fetal Diagn Ther 2012, 10.1159/000335020.
13. Hostein I., Stock N., Soubeyran I., Marty M., Mascarel I.D., Bui M., et al. Nucleic acid quality preservation by an alcohol-based fixative. Comparison with frozen tumors in a routine pathology setting. Diagn Mol Pathol 2011, 20:52-62.
14. Huang H., Hopkins P.B. DNA interstrand cross-linking by formaldehyde: nucleotide sequence preference and covalent structure of the predominant cross-link formed in synthetic oligonucleotide. J Am Chem Soc 1993, 115:9402-9408.
15. Kailasam S., Rogers K.R. A fluorescence-based screening assay for DNA damage induced by genotoxic industrial chemicals. Chemosphere 2007, 66:165-171.
16. Karlsen F., Kalantari M., Chitemerere M., Johansson B., Hagmar B. Modification of human and viral deoxyribonucleic acid by formaldehyde fixation. Lab Invest 1994, 71:604-611.
17. Lee T.-Z., Montalvo L., Chrebtow V., Busch M.P. Quantification of genomic DNA in plasma and serum samples: higher concentrations of genomic DNA found in serum than in plasma. Immunohematology 2001, 41:276-282.
18. Lee Y.J., Yoon K.A., Han J.-Y., Kim H.T., Yun T., Lee G.K., et al. Circulating cell-free DNA in plasma of never smokers with advanced lung adenocarcinoma receiving Gefitinib or standard chemotherapy as first-line therapy. Clin Cancer Res 2011, 17:5179-5187.
19. Lo Y.M., Tein M.S., Lau T.K., Haines C.J., Leung T.N., Poon P.M., et al. Quantitative analysis of fetal DNA in maternal plasma and serum: implications for non-invasive prenatal diagnosis. Am J Hum Genet 1998, 62:768-775.
20. Lu K., Ye W., Zhou L., Collins L.B., Chen X., Gold A., et al. Structural characterization of formaldehyde-induced cross-links between amino acids and deoxynucleosides and their oligomers. J Am Chem Soc 2010, 132:3388-3399.
21. Moelans C.B., Oostenrijk D., Moons M.J., Diest PJv. Formaldehyde substitute fixatives: effects on nucleic acid preservation. J Clin Pathol 2011, 64:960-967.
22. Nicolaides K.H., Syngelaki A., Ashoor G., Birdir C., Touzet G. Noninvasive prenatal testing for fetal trisomies in a routinely screened first-trimester population. Am J Obstet Gynecol 2012, 207:374e1-374e6.
23. Norton S.E., Luna K.K., Lechner J.M., Qin J., Fernando R.F. A new blood collection device minimizes cellular DNA release during sample storage and shipping when compared to a standard device. J Clin Lab Anal 2013, (in press). 10.1002/jcla.21603.
24. Quach N., Myron G.F., Shibata D. In vitro mutation artifacts after formalin fixation and error prone translesion synthesis during PCR. BMC Clin Pathol 2004, 4:1. 10.1186/1472-6890-4-1.
25. Tsui N.B.Y., Lo Y.M.D. Recent advances in the analysis of fetal nucleic acids in maternal plasma. Curr Opin Hematol 2012, 19:462-468.
26. Wagner J. Free DNA - new potential analyte in clinical laboratory diagnostics?. Biochem Med 2012, 22:24-38.
27. Zhang Y., Li Q., Hui M., Hu Z., Sun S. Effect of formaldehyde treatment on the recovery of cell-free DNA from maternal plasma at different processing times. Clin Chim Acta 2008, 397:60-64.
28. Zheng Y.W.L., Chan K.C.A., Sun H., Jiang P., Su X., Chen E.Z., et al. Nonhematopoietically derived DNA is shorter than hemtopoietically derived DNA in plasma: a transplantation model. Clin Chem 2012, 58:549-558.