Plant-microbe interactions as drivers of ecosystem functions relevant for the biodegradation of organic contaminants

Current Opinion in Biotechnology

Volumn 27, Issue , 2014, Pages 168-175

  Fester, Thomas ^a   Giebler, Julia ^a   Wick, Lukas Y ^a   Schlosser, Dietmar ^a   Kästner, Matthias ^a  

^a HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH UFZ   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BIOCHEMISTRY; BIODEGRADATION; BIOREMEDIATION; BIOTECHNOLOGY; CHEMICAL STABILITY; DETOXIFICATION; INDICATORS (CHEMICAL); INDUSTRIAL CHEMICALS; MICROBIOLOGY; NATURAL ATTENUATION; ORGANIC CHEMICALS; STABILITY;

BLACK BOXES; CONSTRUCTED WETLANDS; ECOSYSTEM FUNCTIONS; MICROBIAL COMMUNITIES; ORGANIC CONTAMINANT; PLANT-MICROBE INTERACTIONS; RECENT RESEARCHES; STRUCTURAL STABILITIES;

ECOSYSTEMS;

ORGANIC COMPOUND;

BIOTRANSFORMATION; CONSTRUCTED WETLAND; DETOXIFICATION; MICROBIAL COMMUNITY; NONHUMAN; PHYTOREMEDIATION; PLANT MICROORGANISM INTERACTION; POLLUTION TRANSPORT; PRIORITY JOURNAL; REVIEW; SOIL POLLUTANT; VEGETATION; WATER POLLUTANT;

BACTERIA; BIODEGRADATION, ENVIRONMENTAL; BIOLOGICAL AVAILABILITY; ECOSYSTEM; ENVIRONMENTAL POLLUTANTS; ORGANIC CHEMICALS; PLANTS; WETLANDS;

EID: 84894664956     PISSN: 09581669     EISSN: 18790429     Source Type: Journal    
DOI: 10.1016/j.copbio.2014.01.017     Document Type: Review

References (62)

1. Abhilash P.C., Powell J.R., Singh H.B., Singh B.K. Plant-microbe interactions: novel applications for exploitation in multipurpose remediation technologies. Trends Biotechnol 2012, 30:416-420.
2. Van Aken B., Correa P.A., Schnoor J.L. Phytoremediation of polychlorinated biphenyls: new trends and promises. Environ Sci Technol 2010, 44:2767-2776.
3. Harms H., Schlosser D., Wick L.Y. Untapped potential: exploiting fungi in bioremediation of hazardous chemicals. Nat Rev Microbiol 2011, 9:177-192.
4. Sun Y., Ling W., Liu J., Zong J. Effects of arbuscular mycorrhizal fungi on the uptake of phenanthrene and pyrene by Alfalfa. J Agro-Environ Sci 2012, 31:1920-1926.
5. Gao Y.Z., Cheng Z.X., Ling W.T., Huang J. Arbuscular mycorrhizal fungal hyphae contribute to the uptake of polycyclic aromatic hydrocarbons by plant roots. Bioresour Technol 2010, 101:6895-6901.
6. Joner E., Leyval C., Colpaert J. Ectomycorrhizas impede phytoremediation of polycyclic aromatic hydrocarbons (PAHs) both within and beyond the rhizosphere. Environ Pollut 2006, 142:34-38.
7. Cruz-Hernandez A., Tomasini-Campocosio A., Perez-Flores L.J., Fernandez-Perrino F.J., Gutierrez-Rojas M. Inoculation of seed-borne fungus in the rhizosphere of Festuca arundinacea promotes hydrocarbon removal and pyrene accumulation in roots. Plant Soil 2013, 362:261-270.
8. Zikmundova M., Drandarov K., Bigler L., Hesse M., Werner C. Biotransformation of 2-benzoxazolinone and 2-hydroxy-1,4-benzoxazin-3-one by endophytic fungi isolated from Aphelandra tetragona. Appl Environ Microbiol 2002, 68:4863-4870.
9. Li H.Y., Wei D.Q., Shen M., Zhou Z.P. Endophytes and their role in phytoremediation. Fungal Divers 2012, 54:11-18.
10. Wang G., Wen J., Li H., Qiu C. Biodegradation of phenol and m-cresol by Candida albicans PDY-07 under anaerobic condition. J Ind Microbiol Biotechnol 2009, 36:809-814.
11. Martin F., Kohler A., Murat C., Balestrini R., Coutinho P.M., Jaillon O., Montanini B., Morin E., Noel B., Percudani R., et al. Perigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature 2010, 464:1033-1038.
12. Floudas D., Binder M., Riley R., Barry K., Blanchette R.A., Henrissat B., Martínez A.T., Otillar R., Spatafora J.W., Yadav J.S., et al. The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 2012, 36:1715-1719.
13. Brune A., Frenzel P., Cypionka H. Life at the oxic-anoxic interface: microbial activities and adaptations. FEMS Microbiol Rev 2000, 24:691-710.
14. Springael D., Top E.M. Horizontal gene transfer and microbial adaptation to xenobiotics: new types of mobile genetic elements and lessons from ecological studies. Trends Microbiol 2004, 12:53-58.
15. Kuiper I., Lagendijk E.L., Bloemberg G.V., Lugtenberg B.J. Rhizoremediation: a beneficial plant-microbe interaction. Mol Plant Microbe Interact 2004, 17:6-15.
16. Segura A., Ramos J.L. Plant-bacteria interactions in the removal of pollutants. Curr Opin Biotechnol 2013, 24:467-473.
17. Tyagi M., da Fonseca M.M., de Carvalho C.C. Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes. Biodegradation 2011, 22:231-241.
18. Berg G., Smalla K. Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol Ecol 2009, 68:1-13.
19. Cook R.L., Hesterberg D. Comparison of trees and grasses for rhizoremediation of petroleum hydrocarbons. Int J Phytoremediation 2013, 15:844-860.
20. Morris C.E., Kinkel L.L. Fifty years of phyllosphere microbiology: significant contributions to research in related fields. Phyllosphere Microbiology 2002, 365-375. American Phytopathological Society, St. Paul, USA. S.E. Lindow, E.I. Hecht-Poninar, V.J. Elloitt (Eds.).
21. Reichenberg F., Mayer P. Two complementary sides of bioavailability: accessibility and chemical activity of organic contaminants in sediments and soils. Environ Toxicol Chem 2006, 25:1239-1240.
22. Baumgarten T., Sperling S., Seifert J., von Bergen M., Steiniger F., Wick L.Y., Heipieper H.J. Membrane vesicle formation as a multiple-stress response mechanism enhances Pseudomonas putida DOT-T1E cell surface hydrophobicity and biofilm formation. Appl Environ Microbiol 2012, 78:6217-6220.
23. Krell T., Lacal J., Reyes-Darias J.A., Jimenez-Sanchez C., Sungthong R., Ortega-Calvo J.J. Bioavailability of pollutants and chemotaxis. Curr Opin Biotechnol 2013, 24:451-456.
24. Ritz K., Young I.M. Interactions between soil structure and fungi. Mycologist 2004, 18:52-59.
25. Heaton L., Obara B., Grau V., Jones N., Nakagaki T., Boddy L., Fricker M.D. Analysis of fungal networks. Fung Biol Rev 2012, 26:12-29.
26. Allen M.F. Linking water and nutrients through the vadose zone: a fungal interface between the soil and plant systems. J Arid Land 2011, 3:155-163.
27. Furuno S., Pazolt K., Rabe C., Neu T.R., Harms H., Wick L.Y. Fungal mycelia allow chemotactic dispersal of polycyclic aromatic hydrocarbon-degrading bacteria in water-unsaturated systems. Environ Microbiol 2010, 12:1391-1400.
28. Barto E.K., Weidenhamer J.D., Cipollini D., Rillig M.C. Fungal superhighways: do common mycorrhizal networks enhance below ground communication?. Trends Plant Sci 2012, 17:633-637.
29. Frey-Klett P., Burlinson P., Deveau A., Barret M., Tarkka M., Sarniguet A. Bacterial-fungal interactions: hyphens between agricultural, clinical, environmental, and food microbiologists. Microbiol Mol Biol Rev 2011, 75:583-609.
30. Schamfuss S., Neu T.R., van der Meer J.R., Tecon R., Harms H., Wick L.Y. Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria. Environ Sci Technol 2013, 47:6908-6910.
31. Ingham C.J., Kalisman O., Finkelshtein A., Ben-Jacob E. Mutually facilitated dispersal between the nonmotile fungus Aspergillus fumigatus and the swarming bacterium Paenibacillus vortex. Proc Natl Acad Sci U S A 2011, 108:19731-19736.
32. Warmink J.A., van Elsas J.D. Migratory response of soil bacteria to Lyophyllum sp strain Karsten in soil microcosms. Appl Environ Microbiol 2009, 75:2820-2830.
33. Kohlmeier S., Smits T.H.M., Ford R.M., Keel C., Harms H., Wick L.Y. Taking the fungal highway: mobilization of pollutant-degrading bacteria by fungi. Environ Sci Technol 2005, 39:4640-4650.
34. Banitz T., Johst K., Wick L.Y., Schamfuss S., Harms H., Frank K. Highways versus pipelines: contributions of two fungal transport mechanisms to efficient bioremediation. Environ Microbiol Rep 2013, 5:211-218.
35. Perez-Reche F.J., Taraskin S.N., Otten W., Viana M.P., Costa L.D., Gilligan C.A. Prominent effect of soil network heterogeneity on microbial invasion. Phys Rev Lett 2012, 109.
36. van der Heijden M.G.A., Bardgett R.D., van Straalen N.M. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol Lett 2008, 11:296-310.
37. Vymazal J. Plants used in constructed wetlands with horizontal subsurface flow: a review. Hydrobiologia 2011, 674:133-156.
38. Garcia J., Rousseau D.P.L., Morato J., Lesage E., Matamoros V., Bayona J.M. Contaminant removal processes in subsurface-flow constructed wetlands: a review. Crit Rev Environ Sci Technol 2010, 40:561-661.
39. Kayranli B., Scholz M., Mustafa A., Hedmark A. Carbon storage and fluxes within freshwater wetlands: a critical review. Wetlands 2010, 30:111-124.
40. Seeger E.M., Reiche N., Kuschk P., Borsdorf H., Kaestner M. Performance evaluation using a three compartment mass balance for the removal of volatile organic compounds in pilot scale constructed wetlands. Environ Sci Technol 2011, 45:8467-8474.
41. van Afferden M., Rahman K.Z., Mosig P., De Biase C., Thullner M., Oswald S.E., Muller R.A. Remediation of groundwater contaminated with MTBE and benzene: the potential of vertical-flow soil filter systems. Water Res 2011, 45:5063-5074.
42. Weyens N., van der Lelie D., Taghavi S., Newman L., Vangronsveld J. Exploiting plant-microbe partnerships to improve biomass production and remediation. Trends Biotechnol 2009, 27:591-598.
43. Vangronsveld J., Herzig R., Weyens N., Boulet J., Adriaensen K., Ruttens A., Thewys T., Vassilev A., Meers E., Nehnevajova E., et al. Phytoremediation of contaminated soils and groundwater: lessons from the field. Environ Sci Pollut Res 2009, 16:765-794.
44. Weyens N., Taghavi S., Barac T., van der Lelie D., Boulet J., Artois T., Carleer R., Vangronsveld J. Bacteria associated with oak and ash on a TCE-contaminated site: characterization of isolates with potential to avoid evapotranspiration of TCE. Environ Sci Pollut Res 2009, 16:830-843.
45. Stenuit B.A., Agathos S.N. Microbial 2,4,6-trinitrotoluene degradation: could we learn from (bio)chemistry for bioremediation and vice versa?. Appl Microbiol Biotechnol 2010, 88:1043-1050.
46. Van Aken B. Transgenic plants for enhanced phytoremediation of toxic explosives. Curr Opin Biotechnol 2009, 20:231-236.
47. Marchand L., Mench M., Jacob D.L., Otte M.L. Metal and metalloid removal in constructed wetlands, with emphasis on the importance of plants and standardized measurements: a review. Environ Pollut 2010, 158:3447-3450.
48. Batty L.C., Dolan C. The potential use of phytoremediation for sites with mixed organic and inorganic contamination. Crit Rev Environ Sci Technol 2013, 43:217-259.
49. Badri D.V., Weir T.L., van der Lelie D., Vivanco J.M. Rhizosphere chemical dialogues: plant-microbe interactions. Curr Opin Biotechnol 2009, 20:642-650.
50. Rylott E.L., Bruce N.C. Plants disarm soil: engineering plants for the phytoremediation of explosives. Trends Biotechnol 2009, 27:73-81.
51. Lorenz A., Rylott E.L., Strand S.E., Bruce N.C. Towards engineering degradation of the explosive pollutant hexahydro-1,3,5-trinitro-1,3,5-triazine in the rhizosphere. FEMS Microbiol Lett 2013, 340:49-54.
52. Weiss M., Geyer R., Russow R., Richnow H.H., Kastner M. Fate and metabolism of [N-15]2,4,6-trinitrotoluene in soil. Environ Toxicol Chem 2004, 23:1852-1860.
53. Weiss M., Geyer R., Gunther T., Kaestner M. Fate and stability of C-14-labeled 2,4,6-trinitrotoluene in contaminated soil following microbial bioremediation processes. Environ Toxicol Chem 2004, 23:2049-2050.
54. Heiss G., Knackmuss H.J. Bioelimination of trinitroaromatic compounds: immobilization versus mineralization. Curr Opin Microbiol 2002, 5:282-287.
55. Fernandez-Luqueno F., Valenzuela-Encinas C., Marsch R., Martinez-Suarez C., Vazquez-Nunez E., Dendooven L. Microbial communities to mitigate contamination of PAHs in soil-possibilities and challenges: a review. Environ Sci Pollut Res 2011, 18:12-30.
56. Loick N., Hobbs P.J., Hale M.D.C., Jones D.L. Bioremediation of poly-aromatic hydrocarbon (PAH)-contaminated soil by composting. Crit Rev Environ Sci Technol 2009, 39:271-332.
57. Smith S.E., Facelli E., Pope S., Smith F.A. Plant performance in stressful environments: interpreting new and established knowledge of the roles of arbuscular mycorrhizas. Plant Soil 2010, 326:3-20.
58. Hayat R., Ali S., Amara U., Khalid R., Ahmed I. Soil beneficial bacteria and their role in plant growth promotion: a review. Ann Microbiol 2010, 60:579-598.
59. Buxdorf K., Rahat I., Gafni A., Levy M. The epiphytic fungus Pseudozyma aphidis induces jasmonic acid- and salicylic acid/nonexpressor of PR1-independent local and systemic resistance. Plant Physiol 2013, 161:2014-2022.
60. Beketov M.A., Liess M. Ecotoxicology and macroecology-time for integration. Environ Pollut 2012, 162:247-254.
61. Verdin A., Lounes-Hadj Sahraoui A., Fontaine J., Grandmougin-Ferjani A., Durand R. Effects of anthracene on development of an arbuscular mycorrhizal fungus and contribution of the symbiotic association to pollutant dissipation. Mycorrhiza 2006, 16:397-405.
62. Griffiths B.S., Philippot L. Insights into the resistance and resilience of the soil microbial community. FEMS Microbiol Rev 2013, 37:112-129.