Entering the era of single-cell transcriptomics in biology and medicine

Nature Methods

Volumn 11, Issue 1, 2014, Pages 22-24

  Sandberg, Rickard ^a,b  

^a LUDWIG INSTITUTE FOR CANCER RESEARCH   (Sweden)

^b KAROLINSKA INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

RNA; TRANSCRIPTOME; TUMOR MARKER;

CELL DIFFERENTIATION; CELL STIMULATION; CIRCULATING TUMOR CELL; GENE EXPRESSION; GENE MUTATION; HUMAN; MEDICAL RESEARCH; NONHUMAN; PRIORITY JOURNAL; REVERSE TRANSCRIPTION; REVIEW; RNA PROCESSING; RNA SEQUENCE; RNA TRANSCRIPTION; SINGLE CELL ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; TRANSCRIPTOMICS; ANIMAL; ARTICLE; DNA SEQUENCE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; METHODOLOGY; SEQUENCE ANALYSIS;

ANIMALS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HUMANS; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, RNA; SINGLE-CELL ANALYSIS; TRANSCRIPTOME;

EID: 84894630323     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.2764     Document Type: Review

References (31)

1. Novick, A. & Weiner, M. Proc. Natl. Acad. Sci. USA 43, 553-566 (1957).
2. Brady, G., Barbara, M. & Iscove, N.N. Methods Mol. Biol. 2, 17-25 (1990).
3. Eberwine, J. et al. Proc. Natl. Acad. Sci. USA 89, 3010-3014 (1992).
4. Islam, S. et al. Nat. Protoc. 7, 813-828 (2012).
5. Tang, F. et al. Nat. Protoc. 5, 516-535 (2010).
6. Picelli, S. et al. Nat. Protocols, doi:10.1038/ nprot.2014.006 (2 January 2014).
7. Yan, L. et al. Nat. Struct. Mol. Biol. 20, 1131-1139 (2013).
8. Tang, F. et al. Cell Stem Cell 6, 468-478 (2010).
9. Ramsköld, D. et al. Nat. Biotechnol. 30, 777-782 (2012).
10. Islam, S. et al. Genome Res. 21, 1160-1167 (2011).
11. Picelli, S. et al. Nat. Methods 10, 1096-1098 (2013).
12. Kivioja, T. et al. Nat. Methods 9, 72-74 (2012).
13. Hashimshony, T., Wagner, F., Sher, N. & Yanai, I. Cell Rep 2, 666-673 (2012).
14. Shapiro, E., Biezuner, T. & Linnarsson, S. Nat. Rev. Genet. 14, 618-630 (2013).
15. Dominissini, D. et al. Nature 485, 201-206 (2012).
16. Raj, A. & van Oudenaarden, A. Cell 135, 216-226 (2008).
17. Chubb, J.R., Trcek, T., Shenoy, S.M. & Singer, R.H. Curr. Biol. 16, 1018-1025 (2006).
18. Wills, Q.F. et al. Nat. Biotechnol. 31, 748-752 (2013).
19. McDavid, A. et al. Bioinformatics 29, 461-467 (2013).
20. Mercer, T.R. et al. Nat. Biotechnol. 30, 99-104 (2012).
21. Wang, E.T. et al. Nature 456, 470-476 (2008).
22. Shalek, A.K. et al. Nature 498, 236-240 (2013).
23. Sandberg, R., Neilson, J.R., Sarma, A., Sharp, P.A. & Burge, C.B. Science 320, 1643-1647 (2008).
24. Mayr, C. & Bartel, D.P. Cell 138, 673-684 (2009).
25. Rhodes, D.R. et al. Proc. Natl. Acad. Sci. USA 101, 9309-9314 (2004).
26. Golub, T.R. et al. Science 286, 531-537 (1999).
27. Dalerba, P. et al. Nat. Biotechnol. 29, 1120-1127 (2011).
28. Gerlinger, M. et al. N. Engl. J. Med. 366, 883-892 (2012).
29. Yu, M. et al. Nature 487, 510-513 (2012).
30. Vogelstein, B. et al. Science 339, 1546-1558 (2013).
31. Kim, H.D., Shay, T., O'Shea, E.K. & Regev, A. Science 325, 429-432 (2009).