-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. Journal of Molecular Biology, 215, 403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
42449109998
-
Genetic discontinuity, breeding-system change and population history of Arabis alpina in the Italian Peninsula and adjacent Alps
-
Ansell SW, Grundmann M, Russell SJ, Schneider H, Vogel JC (2008) Genetic discontinuity, breeding-system change and population history of Arabis alpina in the Italian Peninsula and adjacent Alps. Molecular Ecology, 17, 2245-2257.
-
(2008)
Molecular Ecology
, vol.17
, pp. 2245-2257
-
-
Ansell, S.W.1
Grundmann, M.2
Russell, S.J.3
Schneider, H.4
Vogel, J.C.5
-
3
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative.
-
Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
4
-
-
34547161807
-
Pleistocene colonization of afro-alpine 'sky islands' by the arctic-alpine Arabis alpina
-
Assefa A, Ehrich D, Taberlet P, Nemomissa S, Brochmann C (2007) Pleistocene colonization of afro-alpine 'sky islands' by the arctic-alpine Arabis alpina. Heredity, 99, 133-142.
-
(2007)
Heredity
, vol.99
, pp. 133-142
-
-
Assefa, A.1
Ehrich, D.2
Taberlet, P.3
Nemomissa, S.4
Brochmann, C.5
-
5
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
Baird NA, Etter PD, Atwood TS, et al. (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE, 3, e3376.
-
(2008)
PLoS ONE
, vol.3
-
-
Baird, N.A.1
Etter, P.D.2
Atwood, T.S.3
-
6
-
-
80052722558
-
SEED: efficient clustering of next-generation sequences
-
Bao E, Jiang T, Kaloshian I, Girke T (2011) SEED: efficient clustering of next-generation sequences. Bioinformatics, 27, 2502-2509.
-
(2011)
Bioinformatics
, vol.27
, pp. 2502-2509
-
-
Bao, E.1
Jiang, T.2
Kaloshian, I.3
Girke, T.4
-
7
-
-
3042672020
-
Functional annotation of the Arabidopsis genome using controlled vocabularies
-
Berardini TZ, Mundodi S, Reiser L et al. (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiology, 135, 745-755.
-
(2004)
Plant Physiology
, vol.135
, pp. 745-755
-
-
Berardini, T.Z.1
Mundodi, S.2
Reiser, L.3
-
8
-
-
84878362840
-
Mechanisms of age-dependent response to winter temperature in perennial flowering of Arabis alpina
-
Bergonzi S, Albani MC, Ver Loren van Themaat E et al. (2013) Mechanisms of age-dependent response to winter temperature in perennial flowering of Arabis alpina. Science, 340, 1094-1097.
-
(2013)
Science
, vol.340
, pp. 1094-1097
-
-
Bergonzi, S.1
Albani, M.C.2
Ver Loren van Themaat, E.3
-
9
-
-
84861626102
-
Contemporary gene flow and mating system of Arabis alpina in a Central European alpine landscape
-
Buehler D, Graf R, Holderegger R, Gugerli F (2012) Contemporary gene flow and mating system of Arabis alpina in a Central European alpine landscape. Annals of Botany, 109, 1359-1367.
-
(2012)
Annals of Botany
, vol.109
, pp. 1359-1367
-
-
Buehler, D.1
Graf, R.2
Holderegger, R.3
Gugerli, F.4
-
10
-
-
84873713995
-
An outlier locus relevant in habitat-mediated selection in an alpine plant across independent regional replicates
-
Buehler D, Poncet D, Holderegger R, Manel S, Taberlet P, Gugerli F (2013) An outlier locus relevant in habitat-mediated selection in an alpine plant across independent regional replicates. Evolutionary Ecology, 27, 285-300.
-
(2013)
Evolutionary Ecology
, vol.27
, pp. 285-300
-
-
Buehler, D.1
Poncet, D.2
Holderegger, R.3
Manel, S.4
Taberlet, P.5
Gugerli, F.6
-
11
-
-
34250189553
-
Genetic consequences of Pleistocene range shifts: contrast between the Arctic, the Alps and the East African mountains
-
Ehrich D, Gaudeul M, Assefa A et al. (2007) Genetic consequences of Pleistocene range shifts: contrast between the Arctic, the Alps and the East African mountains. Molecular Ecology, 16, 2542-2559.
-
(2007)
Molecular Ecology
, vol.16
, pp. 2542-2559
-
-
Ehrich, D.1
Gaudeul, M.2
Assefa, A.3
-
12
-
-
79955783956
-
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
-
Elshire RJ, Glaubitz JC, Sun Q et al. (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE, 6, e19379.
-
(2011)
PLoS ONE
, vol.6
-
-
Elshire, R.J.1
Glaubitz, J.C.2
Sun, Q.3
-
13
-
-
84857480990
-
Continent-wide response of mountain vegetation to climate change
-
Gottfried M, Pauli H, Futschik A et al. (2012) Continent-wide response of mountain vegetation to climate change. Nature Climate Change, 2, 111-115.
-
(2012)
Nature Climate Change
, vol.2
, pp. 111-115
-
-
Gottfried, M.1
Pauli, H.2
Futschik, A.3
-
14
-
-
0009662566
-
Assessing alpine plant vulnerability to climate change: a modeling perspective
-
Gruisan A, Theurillat JP (2000) Assessing alpine plant vulnerability to climate change: a modeling perspective. Integrated Assessment, 1, 307-320.
-
(2000)
Integrated Assessment
, vol.1
, pp. 307-320
-
-
Gruisan, A.1
Theurillat, J.P.2
-
15
-
-
84870867829
-
Sunflower genetic, genomic and ecological resources
-
Kane NC, Burke JM, Marek L et al. (2013) Sunflower genetic, genomic and ecological resources. Molecular Ecology Resources, 13, 10-20.
-
(2013)
Molecular Ecology Resources
, vol.13
, pp. 10-20
-
-
Kane, N.C.1
Burke, J.M.2
Marek, L.3
-
16
-
-
33644763932
-
Three times out of Asia Minor: the phylogeography of Arabis alpina L. (Brassicaceae)
-
Koch MA, Kiefer C, Ehrich D, Vogel J, Brochmann C, Mummenhoff K (2006) Three times out of Asia Minor: the phylogeography of Arabis alpina L. (Brassicaceae). Molecular Ecology, 15, 825-839.
-
(2006)
Molecular Ecology
, vol.15
, pp. 825-839
-
-
Koch, M.A.1
Kiefer, C.2
Ehrich, D.3
Vogel, J.4
Brochmann, C.5
Mummenhoff, K.6
-
17
-
-
85047683641
-
An oligopeptide transporter gene family in Arabidopsis
-
Koh S, Wiles AM, Sharp JS, Naider FR, Becker JM, Stacey G (2002) An oligopeptide transporter gene family in Arabidopsis. Plant Physiology, 128, 21-29.
-
(2002)
Plant Physiology
, vol.128
, pp. 21-29
-
-
Koh, S.1
Wiles, A.M.2
Sharp, J.S.3
Naider, F.R.4
Becker, J.M.5
Stacey, G.6
-
19
-
-
36248950165
-
The use of 'altitude' in ecological research
-
Körner C (2007) The use of 'altitude' in ecological research. Trends in Ecology and Evolution, 22, 569-574.
-
(2007)
Trends in Ecology and Evolution
, vol.22
, pp. 569-574
-
-
Körner, C.1
-
20
-
-
63649084301
-
Aquilegia - A new model for plant development, ecology and evolution
-
Kramer EM (2009) Aquilegia - A new model for plant development, ecology and evolution. Annual Reviews of Plant Biology, 60, 261-277.
-
(2009)
Annual Reviews of Plant Biology
, vol.60
, pp. 261-277
-
-
Kramer, E.M.1
-
21
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
22
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
23
-
-
57849109041
-
The dynamic ups and downs of genome size evolution in Brassicaceae
-
Lysak MA, Koch MA, Beaulieu JM, Meister A, Leitch IJ (2009) The dynamic ups and downs of genome size evolution in Brassicaceae. Molecular Biology and Evolution, 26, 85-98.
-
(2009)
Molecular Biology and Evolution
, vol.26
, pp. 85-98
-
-
Lysak, M.A.1
Koch, M.A.2
Beaulieu, J.M.3
Meister, A.4
Leitch, I.J.5
-
24
-
-
77956068779
-
Common factors drive adaptive genetic variation at different spatial scales in Arabis alpina
-
Manel S, Poncet BN, Legendre P, Gugerli F, Holderegger R (2010) Common factors drive adaptive genetic variation at different spatial scales in Arabis alpina. Molecular Ecology, 19, 3824-3835.
-
(2010)
Molecular Ecology
, vol.19
, pp. 3824-3835
-
-
Manel, S.1
Poncet, B.N.2
Legendre, P.3
Gugerli, F.4
Holderegger, R.5
-
25
-
-
84864454389
-
Broad-scale adaptative genetic variation in alpine plants is driven by temperature and precipitation
-
Manel S, Gugerli F, Thuiller W et al. (2012) Broad-scale adaptative genetic variation in alpine plants is driven by temperature and precipitation. Molecular Ecology, 15, 3729-3738.
-
(2012)
Molecular Ecology
, vol.15
, pp. 3729-3738
-
-
Manel, S.1
Gugerli, F.2
Thuiller, W.3
-
27
-
-
77952886150
-
Assembly algorithms for next-generation sequencing data
-
Miller JR, Koren S, Sutton G (2010) Assembly algorithms for next-generation sequencing data. Genomics, 95, 315-327.
-
(2010)
Genomics
, vol.95
, pp. 315-327
-
-
Miller, J.R.1
Koren, S.2
Sutton, G.3
-
28
-
-
1642271573
-
SNPs in ecology, evolution and conservation
-
SNP workshop group.
-
Morin PA, Luikart G, Wayne RK, SNP workshop group (2004) SNPs in ecology, evolution and conservation. Trends in Ecology and Evolution, 19, 208-216.
-
(2004)
Trends in Ecology and Evolution
, vol.19
, pp. 208-216
-
-
Morin, P.A.1
Luikart, G.2
Wayne, R.K.3
-
29
-
-
0034708758
-
A whole-genome assembly of Drosophila
-
Myers EW, Sutton GG, Delcher AL et al. (2000) A whole-genome assembly of Drosophila. Science, 287, 2196-2204.
-
(2000)
Science
, vol.287
, pp. 2196-2204
-
-
Myers, E.W.1
Sutton, G.G.2
Delcher, A.L.3
-
30
-
-
0005814023
-
Mathematical model for studying genetic variation in terms of restriction endonucleases
-
Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences of the USA, 76, 5269-5273.
-
(1979)
Proceedings of the National Academy of Sciences of the USA
, vol.76
, pp. 5269-5273
-
-
Nei, M.1
Li, W.H.2
-
31
-
-
84869221631
-
Challenges and pitfalls in the characterization of anonymous outlier AFLP markers in non-model species: lessons from an ocellated lizard genome scan
-
Nunes VL, Beaumont MA, Butlin RK, Paulo OS (2012) Challenges and pitfalls in the characterization of anonymous outlier AFLP markers in non-model species: lessons from an ocellated lizard genome scan. Heredity, 109, 340-348.
-
(2012)
Heredity
, vol.109
, pp. 340-348
-
-
Nunes, V.L.1
Beaumont, M.A.2
Butlin, R.K.3
Paulo, O.S.4
-
32
-
-
34249848751
-
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
-
Parra G, Bradnam K, Korf I (2007) CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics, 23, 1061-1067.
-
(2007)
Bioinformatics
, vol.23
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
33
-
-
84859996084
-
Recent plant diversity changes on Europe's mountain summits
-
Pauli H, Gottfried M, Dullinger S et al. (2012) Recent plant diversity changes on Europe's mountain summits. Science, 336, 353-355.
-
(2012)
Science
, vol.336
, pp. 353-355
-
-
Pauli, H.1
Gottfried, M.2
Dullinger, S.3
-
34
-
-
77954554418
-
Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina
-
Poncet BN, Herrmann D, Gugerli F et al. (2010) Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina. Molecular Ecology, 19, 2896-2907.
-
(2010)
Molecular Ecology
, vol.19
, pp. 2896-2907
-
-
Poncet, B.N.1
Herrmann, D.2
Gugerli, F.3
-
35
-
-
84894283510
-
-
R Core Team R: A language and Environment for Statistical Computing. Vienna, Austria. URL
-
R Core Team (2012) R: A language and Environment for Statistical Computing. Vienna, Austria. URL http://www.R-project.org.
-
(2012)
-
-
-
36
-
-
34548263230
-
Ascertainment bias in spatially structured populations: a case study in the eastern fence lizard
-
Rosenblum EB, Novembre J (2007) Ascertainment bias in spatially structured populations: a case study in the eastern fence lizard. Journal of Heredity, 98, 331-336.
-
(2007)
Journal of Heredity
, vol.98
, pp. 331-336
-
-
Rosenblum, E.B.1
Novembre, J.2
-
37
-
-
70450202132
-
The B73 maize genome: complexity, diversity, and dynamics
-
Schnable PS, Ware D, Fulton RS et al. (2009) The B73 maize genome: complexity, diversity, and dynamics. Science, 326, 1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
-
38
-
-
84874427856
-
Adaptative genetic variation on the landscape: methods and cases
-
Schoville SD, Bonin A, François O, Lobréaux S, Melodelima C, Manel S (2012) Adaptative genetic variation on the landscape: methods and cases. Annual Reviews of Ecology Evolution and Systematics, 43, 23-43.
-
(2012)
Annual Reviews of Ecology Evolution and Systematics
, vol.43
, pp. 23-43
-
-
Schoville, S.D.1
Bonin, A.2
François, O.3
Lobréaux, S.4
Melodelima, C.5
Manel, S.6
-
40
-
-
34547642494
-
Biodiversity: climate change and the ecologist
-
Thuiller W (2007) Biodiversity: climate change and the ecologist. Nature, 448, 550-552.
-
(2007)
Nature
, vol.448
, pp. 550-552
-
-
Thuiller, W.1
-
41
-
-
20444364191
-
Climate change threats to plant diversity in Europe
-
Thuiller W, Lavorel S, Araújo MB, Sykes MT, Prentice IC (2005) Climate change threats to plant diversity in Europe. Proceedings of the National Academy of Sciences of the USA, 102, 8245-8250.
-
(2005)
Proceedings of the National Academy of Sciences of the USA
, vol.102
, pp. 8245-8250
-
-
Thuiller, W.1
Lavorel, S.2
Araújo, M.B.3
Sykes, M.T.4
Prentice, I.C.5
-
42
-
-
83855165105
-
Repetitive DNA and next-generation sequencing: computational challenges and solutions
-
Treangen TJ, Salzberg SL (2012) Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nature Reviews Genetics, 13, 36-46.
-
(2012)
Nature Reviews Genetics
, vol.13
, pp. 36-46
-
-
Treangen, T.J.1
Salzberg, S.L.2
-
43
-
-
38549166557
-
Ecological genomics: understanding gene and genome function in the natural environment
-
Ungerer MC, Johnson LC, Herman MA (2008) Ecological genomics: understanding gene and genome function in the natural environment. Heredity, 100, 178-183.
-
(2008)
Heredity
, vol.100
, pp. 178-183
-
-
Ungerer, M.C.1
Johnson, L.C.2
Herman, M.A.3
-
44
-
-
0035983148
-
A review on SNP and other types of molecular markers and their use in animal genetics
-
Vignal A, Milan D, SanCristobal M, Eggen A (2002) A review on SNP and other types of molecular markers and their use in animal genetics. Genetic Selection Evolution, 34, 275-305.
-
(2002)
Genetic Selection Evolution
, vol.34
, pp. 275-305
-
-
Vignal, A.1
Milan, D.2
SanCristobal, M.3
Eggen, A.4
-
45
-
-
67349222357
-
PEP1 regulates perennial flowering in Arabis alpina
-
Wang R, Farrona S, Vincent C et al. (2009) PEP1 regulates perennial flowering in Arabis alpina. Nature, 459, 423-427.
-
(2009)
Nature
, vol.459
, pp. 423-427
-
-
Wang, R.1
Farrona, S.2
Vincent, C.3
-
46
-
-
38549164078
-
Mimulus is an emerging model system for the integration of ecological and genomic studies
-
Wu CA, Lowry DB, Cooley AM, Wright KM, Lee YW, Willis JH (2008) Mimulus is an emerging model system for the integration of ecological and genomic studies. Heredity, 100, 220-230.
-
(2008)
Heredity
, vol.100
, pp. 220-230
-
-
Wu, C.A.1
Lowry, D.B.2
Cooley, A.M.3
Wright, K.M.4
Lee, Y.W.5
Willis, J.H.6
-
47
-
-
84875218130
-
Are adaptive loci transferable across genomes of related species? Outlier and environmental association analyses in Alpine Brassicaceae species
-
Zulliger D, Schnyder E, Gugerli F (2013) Are adaptive loci transferable across genomes of related species? Outlier and environmental association analyses in Alpine Brassicaceae species. Molecular Ecology, 22, 1626-1639.
-
(2013)
Molecular Ecology
, vol.22
, pp. 1626-1639
-
-
Zulliger, D.1
Schnyder, E.2
Gugerli, F.3
|