-
1
-
-
0034660559
-
Searching for genetic determinants in the new millennium
-
Risch NJ (2000) Searching for genetic determinants in the new millennium. Nature 405: 847-856.
-
(2000)
Nature
, vol.405
, pp. 847-856
-
-
Risch, N.J.1
-
2
-
-
16844366786
-
Genome-wide strategies for detecting multiple loci that influence complex diseases
-
Marchini J, Donnelly P, Cardon LR (2005) Genome-wide strategies for detecting multiple loci that influence complex diseases. Nature Genetics 37: 413-417.
-
(2005)
Nature Genetics
, vol.37
, pp. 413-417
-
-
Marchini, J.1
Donnelly, P.2
Cardon, L.R.3
-
3
-
-
70249134919
-
Molecular networks as sensors and drivers of common human diseases
-
Schadt EE (2009) Molecular networks as sensors and drivers of common human diseases. Nature 461: 218-223.
-
(2009)
Nature
, vol.461
, pp. 218-223
-
-
Schadt, E.E.1
-
5
-
-
27544451127
-
Simple decision rules for classifying human cancers from gene expression profiles
-
DOI 10.1093/bioinformatics/bti631
-
Tan AC, Naiman DQ, Xu L, Winslow RL, Geman D (2005) Simple decision rules for classifying human cancers from gene expression profiles. Bioinformatics 21: 3896-3904. (Pubitemid 41535505)
-
(2005)
Bioinformatics
, vol.21
, Issue.20
, pp. 3896-3904
-
-
Tan, A.C.1
Naiman, D.Q.2
Xu, L.3
Winslow, R.L.4
Geman, D.5
-
6
-
-
78650982063
-
Improving cancer classification accuracy using gene pairs
-
Chopra P, Lee J, Kang J, Lee S (2010) Improving cancer classification accuracy using gene pairs. PLoS ONE 5: e14305.
-
(2010)
PLoS ONE
, vol.5
-
-
Chopra, P.1
Lee, J.2
Kang, J.3
Lee, S.4
-
7
-
-
70349731768
-
The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations
-
Lin X, Afsari B, Marchionni L, Cope L, Parmigiani G, et al. (2009) The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations. BMC bioinformatics 10: 256.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 256
-
-
Lin, X.1
Afsari, B.2
Marchionni, L.3
Cope, L.4
Parmigiani, G.5
-
8
-
-
84865959225
-
The top-scoring 'N' algorithm: A generalized relative expression classification method from small numbers of biomolecules
-
Magis AT, Price ND (2012) The top-scoring 'N' algorithm: a generalized relative expression classification method from small numbers of biomolecules. BMC bioinformatics 13: 227.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 227
-
-
Magis, A.T.1
Price, N.D.2
-
9
-
-
84872920672
-
TSG: A new algorithm for binary and multi-class cancer classification and informative genes selection
-
Wang H, Zhang H, Dai Z, Chen Ms, Yuan Z (2013) TSG: a new algorithm for binary and multi-class cancer classification and informative genes selection. BMC medical genomics 6 Suppl 1: S3.
-
(2013)
BMC Medical Genomics
, vol.6
, Issue.SUPPL. 1
-
-
Wang, H.1
Zhang, H.2
Dai, Z.3
Chen, Ms.4
Yuan, Z.5
-
10
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
DOI 10.1073/pnas.0506580102
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, et al. (2005) Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Sciences of the United States of America 102: 15545-15550. (Pubitemid 41528093)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
11
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic acids research 40: D109-14.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
12
-
-
84876515907
-
STRING v9.1: Protein-protein interaction networks, with increased coverage and integration
-
Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, et al. (2013) STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic acids research 41: D808-15.
-
(2013)
Nucleic Acids Research
, vol.41
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
-
13
-
-
35348891430
-
Network-based classification of breast cancer metastasis
-
Chuang HY, Lee E, Liu YT, Lee D, Ideker T (2007) Network-based classification of breast cancer metastasis. Molecular Systems Biology 3: 140.
-
(2007)
Molecular Systems Biology
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
Lee, E.2
Liu, Y.T.3
Lee, D.4
Ideker, T.5
-
14
-
-
84873051678
-
Identification of coordinately dysregulated subnetworks in complex phenotypes
-
Chowdhury SA, Koyutürk M (2010) Identification of coordinately dysregulated subnetworks in complex phenotypes. Pacific Symposium On Biocomputing 144: 133-144.
-
(2010)
Pacific Symposium on Biocomputing
, vol.144
, pp. 133-144
-
-
Chowdhury, S.A.1
Koyutürk, M.2
-
15
-
-
77956529131
-
Inferring cancer subnetwork markers using density-constrained biclustering
-
Dao P, Colak R, Salari R, Moser F, Davicioni E, et al. (2010) Inferring cancer subnetwork markers using density-constrained biclustering. Bioinformatics 26: i625-i631.
-
(2010)
Bioinformatics
, vol.26
-
-
Dao, P.1
Colak, R.2
Salari, R.3
Moser, F.4
Davicioni, E.5
-
16
-
-
77957694184
-
Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network
-
Su J, Yoon BJ, Dougherty ER (2010) Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network. BMC Bioinformatics 11: S8.
-
(2010)
BMC Bioinformatics
, vol.11
-
-
Su, J.1
Yoon, B.J.2
Dougherty, E.R.3
-
17
-
-
77955484846
-
Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC)
-
Eddy JA, Hood L, Price ND, Geman D (2010) Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC). PLoS Computational Biology 6: 17.
-
(2010)
PLoS Computational Biology
, vol.6
, pp. 17
-
-
Eddy, J.A.1
Hood, L.2
Price, N.D.3
Geman, D.4
-
19
-
-
33846986793
-
Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
-
Stalteri MA, Harrison AP (2007) Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips. BMC Bioinformatics 8: 13.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 13
-
-
Stalteri, M.A.1
Harrison, A.P.2
-
20
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, et al. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286: 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
-
21
-
-
0037165140
-
Prediction of central nervous system embryonal tumour outcome based on gene expression
-
DOI 10.1038/415436a
-
Pomeroy SL, Tamayo P, Gaasenbeek M, Sturla LM, Angelo M, et al. (2002) Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature 415: 436-442. (Pubitemid 34100955)
-
(2002)
Nature
, vol.415
, Issue.6870
, pp. 436-442
-
-
Pomeroy, S.L.1
Tamayo, P.2
Gaasenbeek, M.3
Sturla, L.M.4
Angelo, M.5
McLaughlin, M.E.6
Kim, J.Y.H.7
Goumnerova, L.C.8
Black, P.M.9
Lau, C.10
Allen, J.C.11
Zagzag, D.12
Olson, J.M.13
Curran, T.14
Wetmore, C.15
Biegel, J.A.16
Poggio, T.17
Mukherjee, S.18
Rifkin, R.19
Califano, A.20
Stolovitzky, G.21
Louis, D.N.22
Mesirov, J.P.23
Lander, E.S.24
Golub, T.R.25
more..
-
22
-
-
84894237809
-
-
Technical Report 1, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts, USA. margaret shipp@dfci.harvard.edu
-
Shipp MA, Ross KN, Tamayo P, Weng AP, Kutok JL, et al. (2002) Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning. Technical Report 1, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts, USA. margaret shipp@dfci.harvard.edu.
-
(2002)
Diffuse Large B-cell Lymphoma Outcome Prediction by Gene-expression Profiling and Supervised Machine Learning
-
-
Shipp, M.A.1
Ross, K.N.2
Tamayo, P.3
Weng, A.P.4
Kutok, J.L.5
-
23
-
-
19044391072
-
Gene expression correlates of clinical prostate cancer behavior
-
DOI 10.1016/S1535-6108(02)00030-2
-
Singh D, Febbo PG, Ross K, Jackson DG, Manola J, et al. (2002) Gene expression correlates of clinical prostate cancer behavior. Cancer Cell 1: 203-209. (Pubitemid 41039166)
-
(2002)
Cancer Cell
, vol.1
, Issue.2
, pp. 203-209
-
-
Singh, D.1
Febbo, P.G.2
Ross, K.3
Jackson, D.G.4
Manola, J.5
Ladd, C.6
Tamayo, P.7
Renshaw, A.A.8
D'Amico, A.V.9
Richie, J.P.10
Lander, E.S.11
Loda, M.12
Kantoff, P.W.13
Golub, T.R.14
Sellers, W.R.15
-
24
-
-
0035881732
-
Analysis of gene expression identifies candidate markers and pharmacological targets in prostate cancer
-
Welsh JB, Sapinoso LM, Su AI, Kern SG, Wang-rodriguez J, et al. (2001) Analysis of Gene Expression Identifies Candidate Markers and Pharmacological Targets in Prostate Cancer. Cancer Research 61: 5974-5978. (Pubitemid 32762523)
-
(2001)
Cancer Research
, vol.61
, Issue.16
, pp. 5974-5978
-
-
Welsh, J.B.1
Sapinoso, L.M.2
Su, A.I.3
Kern, S.G.4
Wang-Rodriguez, J.5
Moskaluk, C.A.6
Frierson Jr., H.F.7
Hampton, G.M.8
-
25
-
-
0036735386
-
Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma
-
Gordon GJ, Jensen RV, Hsiao LL, Gullans SR, Blumenstock JE, et al. (2002) Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma. Cancer Research 62: 4963-4967. (Pubitemid 34984420)
-
(2002)
Cancer Research
, vol.62
, Issue.17
, pp. 4963-4967
-
-
Gordon, G.J.1
Jensen, R.V.2
Hsiao, L.-L.3
Gullans, S.R.4
Blumenstock, J.E.5
Ramaswamy, S.6
Richards, W.G.7
Sugarbaker, D.J.8
Bueno, R.9
-
26
-
-
0347201147
-
Multiclass cancer diagnosis using tumor gene expression signatures
-
DOI 10.1073/pnas.211566398
-
Ramaswamy S, Tamayo P, Rifkin R, Mukherjee S, Yeang CH, et al. (2001) Multiclass cancer diagnosis using tumor gene expression signatures. Proceedings of the National Academy of Sciences of the United States of America 98: 15149-15154. (Pubitemid 34013984)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.26
, pp. 15149-15154
-
-
Ramaswamy, S.1
Tamayo, P.2
Rifkin, R.3
Mukherjee, S.4
Yeang, C.-H.5
Angelo, M.6
Ladd, C.7
Reich, M.8
Latulippe, E.9
Mesirov, J.P.10
Poggio, T.11
Gerald, W.12
Loda, M.13
Lander, E.S.14
Golub, T.R.15
-
27
-
-
84944178665
-
Hierarchical grouping to optimize an objective function
-
Ward JH (1963) Hierarchical grouping to optimize an objective function. Journal of the American Statistical Association 58: 236-244.
-
(1963)
Journal of the American Statistical Association
, vol.58
, pp. 236-244
-
-
Ward, J.H.1
-
30
-
-
41349089065
-
A critical role for Lyn in acute myeloid leukemia
-
DOI 10.1182/blood-2007-04-082099
-
Dos Santos C, Demur C, Bardet V, Prade-Houdellier N, Payrastre B, et al. (2008) A critical role for Lyn in acute myeloid leukemia. Blood 111: 2269-79. (Pubitemid 351451434)
-
(2008)
Blood
, vol.111
, Issue.4
, pp. 2269-2279
-
-
Dos, S.C.1
Demur, C.2
Bardet, V.3
Prade-Houdellier, N.4
Payrastre, B.5
Recher, C.6
-
31
-
-
77952299648
-
Role of the PI3K/AKT and mTOR signaling pathways in acute myeloid leukemia
-
Park S, Chapuis N, Tamburini J, Bardet V, Cornillet-Lefebvre P, et al. (2010) Role of the PI3K/AKT and mTOR signaling pathways in acute myeloid leukemia. Haematologica 95: 819-28.
-
(2010)
Haematologica
, vol.95
, pp. 819-828
-
-
Park, S.1
Chapuis, N.2
Tamburini, J.3
Bardet, V.4
Cornillet-Lefebvre, P.5
-
32
-
-
38049187096
-
Mammalian target of rapamycin (mTOR) inhibition activates phosphatidylinositol 3-kinase/Akt by up-regulating insulinlike growth factor-1 receptor signaling in acute myeloid leukemia: Rationale for therapeutic inhibition of both pathways
-
Tamburini J, Chapuis N, Bardet V, Park S, Sujobert P, et al. (2008) Mammalian target of rapamycin (mTOR) inhibition activates phosphatidylinositol 3-kinase/Akt by up-regulating insulinlike growth factor-1 receptor signaling in acute myeloid leukemia: rationale for therapeutic inhibition of both pathways. Blood 111: 379-82.
-
(2008)
Blood
, vol.111
, pp. 379-382
-
-
Tamburini, J.1
Chapuis, N.2
Bardet, V.3
Park, S.4
Sujobert, P.5
-
33
-
-
84879996107
-
β2 integrin-derived signals induce cell survival and proliferation of AML blasts by activating a Syk/STAT signaling axis
-
Oellerich T, Oellerich MF, Engelke M, Münch S, Mohr S, et al. (2013) β2 integrin-derived signals induce cell survival and proliferation of AML blasts by activating a Syk/STAT signaling axis. Blood 121: 3889-99.
-
(2013)
Blood
, vol.121
, pp. 3889-3899
-
-
Oellerich, T.1
Oellerich, M.F.2
Engelke, M.3
Münch, S.4
Mohr, S.5
-
34
-
-
84873848473
-
Lysosomal disruption preferentially targets acute myeloid leukemia cells and progenitors
-
Sukhai MA, Prabha S, Hurren R, Rutledge AC, Lee AY, et al. (2013) Lysosomal disruption preferentially targets acute myeloid leukemia cells and progenitors. The Journal of clinical investigation 123: 315-28.
-
(2013)
The Journal of Clinical Investigation
, vol.123
, pp. 315-328
-
-
Sukhai, M.A.1
Prabha, S.2
Hurren, R.3
Rutledge, A.C.4
Lee, A.Y.5
-
35
-
-
27544491192
-
ROCR: Visualizing classifier performance in R
-
DOI 10.1093/bioinformatics/bti623
-
Sing T, Sander O, Beerenwinkel N, Lengauer T (2005) ROCR: visualizing classifier performance in R. Bioinformatics (Oxford, England) 21: 3940-1. (Pubitemid 41535515)
-
(2005)
Bioinformatics
, vol.21
, Issue.20
, pp. 3940-3941
-
-
Sing, T.1
Sander, O.2
Beerenwinkel, N.3
Lengauer, T.4
|