메뉴 건너뛰기




Volumn 47, Issue 2, 2014, Pages 708-717

Nonuniform sampling and maximum entropy reconstruction in multidimensional NMR

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ENTROPY; FOURIER ANALYSIS; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

EID: 84894236263     PISSN: 00014842     EISSN: 15204898     Source Type: Journal    
DOI: 10.1021/ar400244v     Document Type: Article
Times cited : (104)

References (43)
  • 1
    • 0002521965 scopus 로고
    • Application of Fourier transform spectroscopy to magnetic resonance
    • Ernst, R. R.; Anderson, W. A. Application of Fourier transform spectroscopy to magnetic resonance Rev. Sci. Instrum. 1966, 37, 93-102
    • (1966) Rev. Sci. Instrum. , vol.37 , pp. 93-102
    • Ernst, R.R.1    Anderson, W.A.2
  • 2
    • 84894274483 scopus 로고
    • Oral Presentation, Ampere International Summer School, Basko Polje, Yugoslavia.
    • Jeener, J. Oral Presentation, Ampere International Summer School, Basko Polje, Yugoslavia, 1971.
    • (1971)
    • Jeener, J.1
  • 4
    • 80053654924 scopus 로고    scopus 로고
    • Fast Acquisition Methods in Multidimensional NMR
    • Dingley, A. J. Pascal, S. M. IOS Press: Amsterdam.
    • Mobli, M.; Hoch, J. C.; King, G. F. Fast Acquisition Methods in Multidimensional NMR. In Advances in Biomedical Spectroscopy; Dingley, A. J.; Pascal, S. M., Eds.; IOS Press: Amsterdam, 2011.
    • (2011) Advances in Biomedical Spectroscopy
    • Mobli, M.1    Hoch, J.C.2    King, G.F.3
  • 5
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • Shannon, C. E. A mathematical theory of communication Bell Syst. Tech. J. 1948, 27, 379-423
    • (1948) Bell Syst. Tech. J. , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 6
    • 0000431384 scopus 로고
    • Maximum entropy image reconstruction: General algorithm
    • Skilling, J.; Bryan, R. Maximum entropy image reconstruction: General algorithm Mon. Not. R. Astron. Soc. 1984, 211, 111-124
    • (1984) Mon. Not. R. Astron. Soc. , vol.211 , pp. 111-124
    • Skilling, J.1    Bryan, R.2
  • 8
    • 84862999493 scopus 로고    scopus 로고
    • Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies
    • Paramasivam, S.; Suiter, C. L.; Hou, G.; Sun, S.; Palmer, M.; Hoch, J. C.; Rovnyak, D.; Polenova, T. Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies J. Phys. Chem. B 2012, 116, 7416-7427
    • (2012) J. Phys. Chem. B , vol.116 , pp. 7416-7427
    • Paramasivam, S.1    Suiter, C.L.2    Hou, G.3    Sun, S.4    Palmer, M.5    Hoch, J.C.6    Rovnyak, D.7    Polenova, T.8
  • 9
    • 34249814611 scopus 로고    scopus 로고
    • An automated tool for maximum entropy reconstruction of biomolecular NMR spectra [3]
    • DOI 10.1038/nmeth0607-467, PII NMETH0607-467
    • Mobli, M.; Maciejewski, M. W.; Gryk, M. R.; Hoch, J. C. An automated tool for maximum entropy reconstruction of biomolecular NMR spectra Nat. Methods 2007, 4, 467-468 (Pubitemid 46852065)
    • (2007) Nature Methods , vol.4 , Issue.6 , pp. 467-468
    • Mobli, M.1    Maciejewski, M.W.2    Gryk, M.R.3    Hoch, J.C.4
  • 11
    • 0000862180 scopus 로고
    • The maximum-entropy method - Appearance and reality
    • Jones, J. A.; Hore, P. J. The maximum-entropy method-appearance and reality J. Magn. Reson. 1991, 92, 363-376
    • (1991) J. Magn. Reson. , vol.92 , pp. 363-376
    • Jones, J.A.1    Hore, P.J.2
  • 12
    • 0001096607 scopus 로고
    • The maximum-entropy method and Fourier transformation compared
    • Jones, J. A.; Hore, P. J. The maximum-entropy method and Fourier transformation compared J. Magn. Reson. 1991, 92, 276-292
    • (1991) J. Magn. Reson. , vol.92 , pp. 276-292
    • Jones, J.A.1    Hore, P.J.2
  • 15
    • 84859761358 scopus 로고    scopus 로고
    • Data Sampling in Multidimensional NMR: Fundamentals and Strategies
    • Billeter, M. Orekhov, V. Springer: Berlin
    • Maciejewski, M. W.; Mobli, M.; Schuyler, A. D.; Stern, A. S.; Hoch, J. C. Data Sampling in Multidimensional NMR: Fundamentals and Strategies. In Topics in Current Chemistry; Billeter, M.; Orekhov, V., Eds.; Springer: Berlin, 2012; pp 1-29.
    • (2012) Topics in Current Chemistry , pp. 1-29
    • Maciejewski, M.W.1    Mobli, M.2    Schuyler, A.D.3    Stern, A.S.4    Hoch, J.C.5
  • 16
    • 0003007299 scopus 로고
    • Exponential sampling: An alternative method for sampling in two dimensional NMR experiments
    • Barna, J. C. J.; Laue, E. D.; Mayger, M. R.; Skilling, J.; Worrall, S. J. P. Exponential sampling: an alternative method for sampling in two dimensional NMR experiments J. Magn. Reson. 1987, 73, 69
    • (1987) J. Magn. Reson. , vol.73 , pp. 69
    • Barna, J.C.J.1    Laue, E.D.2    Mayger, M.R.3    Skilling, J.4    Worrall, S.J.P.5
  • 17
    • 85012711620 scopus 로고
    • Sensitivity enhancement in magnetic resonance
    • Ernst, R. R. Sensitivity enhancement in magnetic resonance Adv. Magn. Reson. 1966, 2, 1-135
    • (1966) Adv. Magn. Reson. , vol.2 , pp. 1-135
    • Ernst, R.R.1
  • 18
    • 0027661526 scopus 로고
    • Application of nonlinear sampling schemes to COSY-type spectra
    • Schmieder, P.; Stern, A. S.; Wagner, G.; Hoch, J. C. Application of nonlinear sampling schemes to COSY-type spectra J. Biomol. NMR 1993, 3, 569-576
    • (1993) J. Biomol. NMR , vol.3 , pp. 569-576
    • Schmieder, P.1    Stern, A.S.2    Wagner, G.3    Hoch, J.C.4
  • 19
    • 0028469225 scopus 로고
    • Improved resolution in triple-resonance spectra by nonlinear sampling in the constant-time domain
    • Schmieder, P.; Stern, A. S.; Wagner, G.; Hoch, J. C. Improved resolution in triple-resonance spectra by nonlinear sampling in the constant-time domain J. Biomol. NMR 1994, 4, 483-490
    • (1994) J. Biomol. NMR , vol.4 , pp. 483-490
    • Schmieder, P.1    Stern, A.S.2    Wagner, G.3    Hoch, J.C.4
  • 20
    • 77950835733 scopus 로고    scopus 로고
    • Poisson-gap sampling and forward maximum entropy reconstruction for enhancing the resolution and sensitivity of protein NMR data
    • Hyberts, S. G.; Takeuchi, K.; Wagner, G. Poisson-gap sampling and forward maximum entropy reconstruction for enhancing the resolution and sensitivity of protein NMR data J. Am. Chem. Soc. 2010, 132, 2145-2147
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 2145-2147
    • Hyberts, S.G.1    Takeuchi, K.2    Wagner, G.3
  • 21
    • 56749131831 scopus 로고    scopus 로고
    • Nonuniform sampling: Bandwidth and aliasing
    • Bretthorst, G. L. Nonuniform sampling: Bandwidth and aliasing Concepts Magn. Reson. 2008, 32A, 417-435
    • (2008) Concepts Magn. Reson. , vol.32 , pp. 417-435
    • Bretthorst, G.L.1
  • 22
    • 33645856186 scopus 로고    scopus 로고
    • Two-dimensional Fourier transform of arbitrarily sampled NMR data sets
    • Kazimierczuk, K.; Kozminski, W.; Zhukov, I. Two-dimensional Fourier transform of arbitrarily sampled NMR data sets J. Magn. Reson. 2006, 179, 323-328
    • (2006) J. Magn. Reson. , vol.179 , pp. 323-328
    • Kazimierczuk, K.1    Kozminski, W.2    Zhukov, I.3
  • 24
    • 84879552273 scopus 로고    scopus 로고
    • Exploring signal-to-noise ratio and sensitivity in non-uniformly sampled multi-dimensional NMR spectra
    • Hyberts, S. G.; Robson, S. A.; Wagner, G. Exploring signal-to-noise ratio and sensitivity in non-uniformly sampled multi-dimensional NMR spectra J. Biomol. NMR 2013, 55, 167-178
    • (2013) J. Biomol. NMR , vol.55 , pp. 167-178
    • Hyberts, S.G.1    Robson, S.A.2    Wagner, G.3
  • 25
    • 47549113849 scopus 로고    scopus 로고
    • Randomization improves sparse sampling in multidimensional NMR
    • Hoch, J. C.; Maciejewski, M. W.; Filipovic, B. Randomization improves sparse sampling in multidimensional NMR J. Magn. Reson. 2008, 193, 317-320
    • (2008) J. Magn. Reson. , vol.193 , pp. 317-320
    • Hoch, J.C.1    Maciejewski, M.W.2    Filipovic, B.3
  • 26
    • 4243114694 scopus 로고    scopus 로고
    • Resolution and sensitivity of high field nuclear magnetic resonance spectroscopy
    • DOI 10.1023/B:JNMR.0000042946.04002.19
    • Rovnyak, D.; Hoch, J. C.; Stern, A. S.; Wagner, G. Resolution and sensitivity of high field nuclear magnetic resonance spectroscopy J. Biomol. NMR 2004, 30, 1-10 (Pubitemid 39295127)
    • (2004) Journal of Biomolecular NMR , vol.30 , Issue.1 , pp. 1-10
    • Rovnyak, D.1    Hoch, J.C.2    Stern, A.S.3    Wagner, G.4
  • 27
    • 36849088522 scopus 로고    scopus 로고
    • Sparse MRI: The application of compressed sensing for rapid MR imaging
    • DOI 10.1002/mrm.21391
    • Lustig, M.; Donoho, D.; Pauly, J. M. Sparse MRI: The application of compressed sensing for rapid MR imaging Magn. Reson. Med. 2007, 58, 1182-1195 (Pubitemid 350234205)
    • (2007) Magnetic Resonance in Medicine , vol.58 , Issue.6 , pp. 1182-1195
    • Lustig, M.1    Donoho, D.2    Pauly, J.M.3
  • 30
    • 24744454144 scopus 로고    scopus 로고
    • High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection
    • DOI 10.1021/ja052120i
    • Eghbalnia, H. R.; Bahrami, A.; Tonelli, M.; Hallenga, K.; Markley, J. L. High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection J. Am. Chem. Soc. 2005, 127, 12528-12536 (Pubitemid 41292171)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.36 , pp. 12528-12536
    • Eghbalnia, H.R.1    Bahrami, A.2    Tonelli, M.3    Hallenga, K.4    Markley, J.L.5
  • 31
    • 54049119553 scopus 로고    scopus 로고
    • Automatic assignment of protein backbone resonances by direct spectrum inspection in targeted acquisition of NMR data
    • Wong, L. E.; Masse, J. E.; Jaravine, V.; Orekhov, V.; Pervushin, K. Automatic assignment of protein backbone resonances by direct spectrum inspection in targeted acquisition of NMR data J. Biomol. NMR 2008, 42, 77-86
    • (2008) J. Biomol. NMR , vol.42 , pp. 77-86
    • Wong, L.E.1    Masse, J.E.2    Jaravine, V.3    Orekhov, V.4    Pervushin, K.5
  • 32
    • 34547249095 scopus 로고    scopus 로고
    • HIFI-C: A robust and fast method for determining NMR couplings from adaptive 3D to 2D projections
    • DOI 10.1007/s10858-007-9173-7
    • Cornilescu, G.; Bahrami, A.; Tonelli, M.; Markley, J. L.; Eghbalnia, H. R. HIFI-C: A robust and fast method for determining NMR couplings from adaptive 3D to 2D projections J. Biomol. NMR 2007, 38, 341-351 (Pubitemid 47128910)
    • (2007) Journal of Biomolecular NMR , vol.38 , Issue.4 , pp. 341-351
    • Cornilescu, G.1    Bahrami, A.2    Tonelli, M.3    Markley, J.L.4    Eghbalnia, H.R.5
  • 33
    • 84859741812 scopus 로고    scopus 로고
    • Applications of non-uniform sampling and processing
    • Hyberts, S. G.; Arthanari, H.; Wagner, G. Applications of non-uniform sampling and processing Top. Curr. Chem. 2012, 316, 125-148
    • (2012) Top. Curr. Chem. , vol.316 , pp. 125-148
    • Hyberts, S.G.1    Arthanari, H.2    Wagner, G.3
  • 34
    • 0003007299 scopus 로고
    • Exponential sampling, an alternative method for sampling in two-dimensional NMR experiments
    • Barna, J. C. J.; Laue, E. D.; Mayger, M. R.; Skilling, J.; Worrall, S. J. P. Exponential sampling, an alternative method for sampling in two-dimensional NMR experiments J. Magn. Reson. 1987, 73, 69-77
    • (1987) J. Magn. Reson. , vol.73 , pp. 69-77
    • Barna, J.C.J.1    Laue, E.D.2    Mayger, M.R.3    Skilling, J.4    Worrall, S.J.P.5
  • 35
    • 77950226261 scopus 로고    scopus 로고
    • A non-uniformly sampled 4D HCC(CO)NH-TOCSY experiment processed using maximum entropy for rapid protein sidechain assignment
    • Mobli, M.; Stern, A. S.; Bermel, W.; King, G. F.; Hoch, J. C. A non-uniformly sampled 4D HCC(CO)NH-TOCSY experiment processed using maximum entropy for rapid protein sidechain assignment J. Magn. Reson. 2010, 204, 160-164
    • (2010) J. Magn. Reson. , vol.204 , pp. 160-164
    • Mobli, M.1    Stern, A.S.2    Bermel, W.3    King, G.F.4    Hoch, J.C.5
  • 36
    • 84855649071 scopus 로고    scopus 로고
    • Suppression of sampling artefacts in high-resolution four-dimensional NMR spectra using signal separation algorithm
    • Stanek, J.; Augustyniak, R.; Koźmiński, W. Suppression of sampling artefacts in high-resolution four-dimensional NMR spectra using signal separation algorithm J. Magn. Reson. 2012, 214, 91-102
    • (2012) J. Magn. Reson. , vol.214 , pp. 91-102
    • Stanek, J.1    Augustyniak, R.2    Koźmiński, W.3
  • 37
    • 30844456535 scopus 로고    scopus 로고
    • SOFAST-HMQC experiments for recording two-dimensional deteronuclear correlation spectra of proteins within a few seconds
    • DOI 10.1007/s10858-005-4425-x
    • Schanda, P.; Kupce, E.; Brutscher, B. SOFAST-HMQC experiments for recording two-dimensional heteronuclear correlation spectra of proteins within a few seconds J. Biomol. NMR 2005, 33, 199-211 (Pubitemid 43118574)
    • (2005) Journal of Biomolecular NMR , vol.33 , Issue.4 , pp. 199-211
    • Schanda, P.1    Kupce, E.2    Brutscher, B.3
  • 38
    • 77955920290 scopus 로고    scopus 로고
    • Combining methods for speeding up multi-dimensional acquisition. Sparse sampling and fast pulsing methods for unfolded proteins
    • Marion, D. Combining methods for speeding up multi-dimensional acquisition. Sparse sampling and fast pulsing methods for unfolded proteins J. Magn. Reson. 2010, 206, 81-87
    • (2010) J. Magn. Reson. , vol.206 , pp. 81-87
    • Marion, D.1
  • 40
    • 34247367191 scopus 로고    scopus 로고
    • Optimized 3D-NMR sampling for resonance assignment of partially unfolded proteins
    • DOI 10.1016/j.jmr.2007.01.013, PII S1090780707000250
    • Pannetier, N.; Houben, K.; Blanchard, L.; Marion, D. Optimized 3D-NMR sampling for resonance assignment of partially unfolded proteins J. Magn. Reson. 2007, 186, 142-149 (Pubitemid 46635244)
    • (2007) Journal of Magnetic Resonance , vol.186 , Issue.1 , pp. 142-149
    • Pannetier, N.1    Houben, K.2    Blanchard, L.3    Marion, D.4
  • 42
    • 27644462754 scopus 로고    scopus 로고
    • 15N-HSQC peaks using high-resolution 3D HNcocaNH experiments with non-uniform sampling
    • DOI 10.1007/s10858-005-1284-4
    • Sun, Z. Y.; Frueh, D. P.; Selenko, P.; Hoch, J. C.; Wagner, G. Fast assignment of 15N-HSQC peaks using high-resolution 3D HNcocaNH experiments with non-uniform sampling J. Biomol. NMR 2005, 33, 43-50 (Pubitemid 41573968)
    • (2005) Journal of Biomolecular NMR , vol.33 , Issue.1 , pp. 43-50
    • Sun, Z.-Y.J.1    Frueh, D.P.2    Selenko, P.3    Hoch, J.C.4    Wagner, G.5
  • 43
    • 33646574966 scopus 로고    scopus 로고
    • Non-uniformly sampled double-TROSY hNcaNH experiments for NMR sequential assignments of large proteins
    • DOI 10.1021/ja0584222
    • Frueh, D. P.; Sun, Z. Y.; Vosburg, D. A.; Walsh, C. T.; Hoch, J. C.; Wagner, G. Non-uniformly sampled double-TROSY hNcaNH experiments for NMR sequential assignments of large proteins J. Am. Chem. Soc. 2006, 128, 5757-5763 (Pubitemid 43724379)
    • (2006) Journal of the American Chemical Society , vol.128 , Issue.17 , pp. 5757-5763
    • Frueh, D.P.1    Sun, Z.-Y.J.2    Vosburg, D.A.3    Walsh, C.T.4    Hoch, J.C.5    Wagner, G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.