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Volumn 316, Issue , 2012, Pages 125-148

Applications of non-uniform sampling and processing

Author keywords

FM reconstruction; NMR; NOESY; Non uniform sampling; Triple resonance

Indexed keywords

ALGORITHM; ARTICLE; ENTROPY; FACTUAL DATABASE; FOURIER ANALYSIS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; STANDARD;

EID: 84859741812     PISSN: 03401022     EISSN: None     Source Type: Book Series    
DOI: 10.1007/128_2011_187     Document Type: Article
Times cited : (124)

References (35)
  • 1
    • 0002521965 scopus 로고
    • Application of Fourier transform spectroscopy to magnetic resonance
    • Ernst RR, Anderson WA (1966) Application of Fourier transform spectroscopy to magnetic resonance. Rev Sci Instr 37:93-106
    • (1966) Rev Sci Instr , vol.37 , pp. 93-106
    • Ernst, R.R.1    Anderson, W.A.2
  • 2
    • 84968470212 scopus 로고
    • An algorithm for the machine calculation of complex Fourier series
    • Cooley JW, Tukey JW (1965) An algorithm for the machine calculation of complex Fourier series. Math Comput 19:297-301
    • (1965) Math Comput , vol.19 , pp. 297-301
    • Cooley, J.W.1    Tukey, J.W.2
  • 3
    • 0003007299 scopus 로고
    • Exponential sampling, an alternative method for sampling in two-dimensional NMR experiments
    • Barna JCJ, Laue ED, Mayger MR, Skilling J, Worrall SJP (1987) Exponential sampling, an alternative method for sampling in two-dimensional NMR experiments. J Magn Reson 73:69-77
    • (1987) J Magn Reson , vol.73 , pp. 69-77
    • Barna, J.C.J.1    Laue, E.D.2    Mayger, M.R.3    Skilling, J.4    Sjp, W.5
  • 4
  • 5
    • 0024350298 scopus 로고
    • Modern spectrum analysis in nuclear magnetic resonance: Alternatives to the Fourier transform
    • Hoch JC (1989) Modern spectrum analysis in nuclear magnetic resonance: alternatives to the Fourier transform. Meth Enzymol 176:216-241
    • (1989) Meth Enzymol , vol.176 , pp. 216-241
    • Hoch, J.C.1
  • 7
    • 4243138246 scopus 로고    scopus 로고
    • Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction
    • Rovnyak D, Frueh DP, Sastry M, Sun ZY, Stern AS, Hoch JC, Wagner G (2004) Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction. J Magn Reson 170:15-21
    • (2004) J Magn Reson , vol.170 , pp. 15-21
    • Rovnyak, D.1    Frueh, D.P.2    Sastry, M.3    Sun, Z.Y.4    Stern, A.S.5    Hoch, J.C.6    Wagner, G.7
  • 8
    • 4243114694 scopus 로고    scopus 로고
    • Resolution and sensitivity of high field nuclear magnetic resonance spectroscopy
    • DOI 10.1023/B:JNMR.0000042946.04002.19
    • Rovnyak D, Hoch JC, Stern AS, Wagner G (2004) Resolution and sensitivity of high field nuclear magnetic resonance spectroscopy. J Biomol NMR 30:1-10 (Pubitemid 39295127)
    • (2004) Journal of Biomolecular NMR , vol.30 , Issue.1 , pp. 1-10
    • Rovnyak, D.1    Hoch, J.C.2    Stern, A.S.3    Wagner, G.4
  • 9
    • 0027661526 scopus 로고
    • Application of nonlinear sampling schemes to COSY-type spectra
    • Schmieder P, Stern AS, Wagner G, Hoch JC (1993) Application of nonlinear sampling schemes to COSY-type spectra. J Biomol NMR 3:569-576
    • (1993) J Biomol NMR , vol.3 , pp. 569-576
    • Schmieder, P.1    Stern, A.S.2    Wagner, G.3    Hoch, J.C.4
  • 10
    • 0028469225 scopus 로고
    • Improved resolution in triple-resonance spectra by nonlinear sampling in the constant-time domain
    • Schmieder P, Stern AS, Wagner G, Hoch JC (1994) Improved resolution in triple-resonance spectra by nonlinear sampling in the constant-time domain. J Biomol NMR 4:483-490
    • (1994) J Biomol NMR , vol.4 , pp. 483-490
    • Schmieder, P.1    Stern, A.S.2    Wagner, G.3    Hoch, J.C.4
  • 12
    • 0038192140 scopus 로고    scopus 로고
    • 13Cα splitting in protein NMR spectra by deconvolution with maximum entropy reconstruction
    • DOI 10.1021/ja027973e
    • Shimba N, Stern AS, Craik CS, Hoch JC, Dotsch V (2003) Elimination of 13Calpha splitting in protein NMR spectra by deconvolution with maximum entropy reconstruction. J Am Chem Soc 125:2382-2383 (Pubitemid 36512211)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.9 , pp. 2382-2383
    • Shimba, N.1    Stern, A.S.2    Craik, C.S.3    Hoch, J.C.4    Dotsch, V.5
  • 13
    • 23144464546 scopus 로고    scopus 로고
    • High-resolution aliphatic side-chain assignments in 3D HCcoNH experiments with joint H-C evolution and non-uniform sampling
    • DOI 10.1007/s10858-005-3339-y
    • Sun ZJ, Hyberts SG, Rovnyak D, Park S, Stern AS, Hoch JC, Wagner G (2005) Highresolution aliphatic side-chain assignments in 3D HCcoNH experiments with joint H-C evolution and non-uniform sampling. J Biomol NMR 32:55-60 (Pubitemid 41086467)
    • (2005) Journal of Biomolecular NMR , vol.32 , Issue.1 , pp. 55-60
    • Sun, Z.-Y.J.1    Hyberts, S.G.2    Rovnyak, D.3    Park, S.4    Stern, A.S.5    Hoch, J.C.6    Wagner, G.7
  • 14
    • 27644462754 scopus 로고    scopus 로고
    • 15N-HSQC peaks using high-resolution 3D HNcocaNH experiments with non-uniform sampling
    • DOI 10.1007/s10858-005-1284-4
    • Sun ZY, Frueh DP, Selenko P, Hoch JC, Wagner G (2005) Fast assignment of 15N-HSQC peaks using high-resolution 3D HNcocaNH experiments with non-uniform sampling. J Biomol NMR 33:43-50 (Pubitemid 41573968)
    • (2005) Journal of Biomolecular NMR , vol.33 , Issue.1 , pp. 43-50
    • Sun, Z.-Y.J.1    Frueh, D.P.2    Selenko, P.3    Hoch, J.C.4    Wagner, G.5
  • 15
    • 14744278812 scopus 로고    scopus 로고
    • 13C NOE spectroscopy using methyl-TROSY, sparse data acquisition, and multidimensional decomposition
    • DOI 10.1021/ja044032o
    • Tugarinov V, Kay LE, Ibraghimov I, Orekhov VY (2005) High-resolution four-dimensional 1H-13C NOE spectroscopy using methyl-TROSY, sparse data acquisition, and multidimensional decomposition. J Am Chem Soc 127:2767-2775 (Pubitemid 40327839)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.8 , pp. 2767-2775
    • Tugarinov, V.1    Kay, L.E.2    Ibraghimov, I.3    Orekhov, V.Yu.4
  • 16
    • 0029283694 scopus 로고
    • Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data
    • Chylla RA, Markley JL (1995) Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data. J Biomol NMR 5:245-258
    • (1995) J Biomol NMR , vol.5 , pp. 245-258
    • Chylla, R.A.1    Markley, J.L.2
  • 17
    • 23344443316 scopus 로고    scopus 로고
    • Fast acquisition of NMR spectra using Fourier transform of non-equispaced data
    • DOI 10.1007/s10858-005-5977-5
    • Marion D (2005) Fast acquisition of NMR spectra using Fourier transform of non-equispaced data. J Biomol NMR 32:141-150 (Pubitemid 41102317)
    • (2005) Journal of Biomolecular NMR , vol.32 , Issue.2 , pp. 141-150
    • Marion, D.1
  • 19
    • 70349145444 scopus 로고    scopus 로고
    • Coupled decomposition of fourdimensional NOESY spectra
    • Hiller S, Ibraghimov I, Wagner G, Orekhov VY (2009) Coupled decomposition of fourdimensional NOESY spectra. J Am Chem Soc 131:12970-12978
    • (2009) J Am Chem Soc , vol.131 , pp. 12970-12978
    • Hiller, S.1    Ibraghimov, I.2    Wagner, G.3    Orekhov, V.Y.4
  • 20
    • 0035211558 scopus 로고    scopus 로고
    • MUNIN: Application of three-way decomposition to the analysis of heteronuclear NMR relaxation data
    • DOI 10.1023/A:1012982830367
    • Korzhneva DM, Ibraghimov IV, Billeter M, Orekhov VY (2001) MUNIN: application of three-way decomposition to the analysis of heteronuclear NMR relaxation data. J Biomol NMR 21:263-268 (Pubitemid 33133426)
    • (2001) Journal of Biomolecular NMR , vol.21 , Issue.3 , pp. 263-268
    • Korzhnev, D.M.1    Ibraghimov, I.V.2    Billeter, M.3    Orekhov, V.Y.4
  • 21
    • 0042386781 scopus 로고    scopus 로고
    • Optimizing resolution in multidimensional NMR by three-way decomposition
    • DOI 10.1023/A:1024944720653
    • Orekhov VY, Ibraghimov I, Billeter M (2003) Optimizing resolution in multidimensional NMR by three-way decomposition. J Biomol NMR 27:165-173 (Pubitemid 37045648)
    • (2003) Journal of Biomolecular NMR , vol.27 , Issue.2 , pp. 165-173
    • Orekhov, V.Y.1    Ibraghimov, I.2    Billeter, M.3
  • 22
    • 0034981892 scopus 로고    scopus 로고
    • MUNIN: A new approach to multi-dimensional NMR spectra interpretation
    • DOI 10.1023/A:1011234126930
    • Orekhov VY, Ibraghimov IV, Billeter M (2001) MUNIN: a new approach to multi-dimensional NMR spectra interpretation. J Biomol NMR 20:49-60 (Pubitemid 32519654)
    • (2001) Journal of Biomolecular NMR , vol.20 , Issue.1 , pp. 49-60
    • Orekhov, V.Y.1    Ibraghimov, I.V.2    Billeter, M.3
  • 23
    • 23944511679 scopus 로고    scopus 로고
    • 3-NH NOESY spectrum on a 29 kDa protein
    • DOI 10.1021/ja053110k
    • Coggins BE, Venters RA, Zhou P (2005) Filtered backprojection for the reconstruction of a high-resolution (4,2)D CH3-NH NOESY spectrum on a 29 kDa protein. J Am Chem Soc 127:11562-11563 (Pubitemid 41208719)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.33 , pp. 11562-11563
    • Coggins, B.E.1    Venters, R.A.2    Zhou, P.3
  • 24
    • 33747881008 scopus 로고    scopus 로고
    • Polar Fourier transforms of radially sampled NMR data
    • DOI 10.1016/j.jmr.2006.06.016, PII S1090780706001571, Thrid Annual Focus on Safety
    • Coggins BE, Zhou P (2006) Polar Fourier transforms of radially sampled NMR data. J Magn Reson 182:84-95 (Pubitemid 44293437)
    • (2006) Journal of Magnetic Resonance , vol.182 , Issue.1 , pp. 84-95
    • Coggins, B.E.1    Zhou, P.2
  • 25
    • 55949122794 scopus 로고    scopus 로고
    • High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN
    • Coggins BE, Zhou P (2008) High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN. J Biomol NMR 42:225-239
    • (2008) J Biomol NMR , vol.42 , pp. 225-239
    • Coggins, B.E.1    Zhou, P.2
  • 26
    • 33645856186 scopus 로고    scopus 로고
    • Two-dimensional Fourier transform of arbitrarily sampled NMR data sets
    • Kazimierczuk K, Kozminski W, Zhukov I (2006) Two-dimensional Fourier transform of arbitrarily sampled NMR data sets. J Magn Reson 179:323-328
    • (2006) J Magn Reson , vol.179 , pp. 323-328
    • Kazimierczuk, K.1    Kozminski, W.2    Zhukov, I.3
  • 27
    • 33750998508 scopus 로고    scopus 로고
    • Random sampling of evolution time space and Fourier transform processing
    • DOI 10.1007/s10858-006-9077-y
    • Kazimierczuk K, Zawadzka A, Kozminski W, Zhukov I (2006) Random sampling of evolution time space and Fourier transform processing. J Biomol NMR 36:157-168 (Pubitemid 44740879)
    • (2006) Journal of Biomolecular NMR , vol.36 , Issue.3 , pp. 157-168
    • Kazimierczuk, K.1    Zawadzka, A.2    Kozminski, W.3    Zhukov, I.4
  • 28
    • 0037419802 scopus 로고    scopus 로고
    • GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information
    • DOI 10.1021/ja028197d
    • Kim S, Szyperski T (2003) GFT NMR, a new approach to rapidly obtain precise highdimensional NMR spectral information. J Am Chem Soc 125:1385-1393 (Pubitemid 36159850)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.5 , pp. 1385-1393
    • Kim, S.1    Szyperski, T.2
  • 29
    • 1442281985 scopus 로고    scopus 로고
    • Fast reconstruction of four-dimensional NMR spectra from plane projections
    • DOI 10.1023/B:JNMR.0000015421.60023.e5
    • Kupce E, Freeman R (2004) Fast reconstruction of four-dimensional NMR spectra from plane projections. J Biomol NMR 28:391-395 (Pubitemid 38268169)
    • (2004) Journal of Biomolecular NMR , vol.28 , Issue.4 , pp. 391-395
    • Kupce, E.1    Freeman, R.2
  • 30
    • 2442687868 scopus 로고    scopus 로고
    • Projection-reconstruction technique for speeding up multidimensional NMR spectroscopy
    • DOI 10.1021/ja049432q
    • Kupce E, Freeman R (2004) Projection-reconstruction technique for speeding up multidimensional NMR spectroscopy. J Am Chem Soc 126:6429-6440 (Pubitemid 38657067)
    • (2004) Journal of the American Chemical Society , vol.126 , Issue.20 , pp. 6429-6440
    • Kupce, E.1    Freeman, R.2
  • 32
    • 70350303834 scopus 로고    scopus 로고
    • FM reconstruction of non-uniformly sampled protein NMR data at higher dimensions and optimization by distillation
    • Hyberts SG, Frueh DP, Arthanari H, Wagner G (2009) FM reconstruction of non-uniformly sampled protein NMR data at higher dimensions and optimization by distillation. J Biomol NMR 45:283-294
    • (2009) J Biomol NMR , vol.45 , pp. 283-294
    • Hyberts, S.G.1    Frueh, D.P.2    Arthanari, H.3    Wagner, G.4
  • 34
    • 77950835733 scopus 로고    scopus 로고
    • Poisson-gap sampling and forward maximum entropy reconstruction for enhancing the resolution and sensitivity of protein NMR data
    • Hyberts SG, Takeuchi K, Wagner G (2010) Poisson-gap sampling and forward maximum entropy reconstruction for enhancing the resolution and sensitivity of protein NMR data. J Am Chem Soc 132:2145-2147
    • (2010) J Am Chem Soc , vol.132 , pp. 2145-2147
    • Hyberts, S.G.1    Takeuchi, K.2    Wagner, G.3
  • 35
    • 70349102122 scopus 로고    scopus 로고
    • A double TROSY hNCAnH experiment for efficient assignment of large and challenging proteins
    • Frueh DP, Arthanari H, Koglin A, Walsh CT, Wagner G (2009) A double TROSY hNCAnH experiment for efficient assignment of large and challenging proteins. J Am Chem Soc 131:12880-12881
    • (2009) J Am Chem Soc , vol.131 , pp. 12880-12881
    • Frueh, D.P.1    Arthanari, H.2    Koglin, A.3    Walsh, C.T.4    Wagner, G.5


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