Randomization improves sparse sampling in multidimensional NMR

Journal of Magnetic Resonance

Volumn 193, Issue 2, 2008, Pages 317-320

  Hoch, Jeffrey C ^a   Maciejewski, Mark W ^a   Filipovic, Blagoje ^a  

^a UNIVERSITY OF CONNECTICUT HEALTH CENTER   (United States)

Author keywords

Maximum entropy reconstruction; Multidimensional NMR; Non uniform sampling

Indexed keywords

ABSORPTION SPECTRA; INTERFEROMETRY; NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OPTICS; RADIATION; REPAIR; RESTORATION; SPECTRUM ANALYSIS; SPECTRUM ANALYZERS;

ADDITIONAL SAMPLING; COMPARATIVE ANALYSIS; DATA COLLECTIONS; DEGREE OF RANDOMNESS; ELSEVIER (CO); MAXIMUM ENTROPY (MAXENT); MULTI DIMENSIONAL NMR; NON-FOURIER; SAMPLING SCHEMES; SAMPLING STRATEGIES; SPARSE SAMPLING;

SAMPLING;

ALGORITHM; ARTICLE; CHEMICAL MODEL; COMPUTER SIMULATION; EVALUATION; FOURIER ANALYSIS; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; REPRODUCIBILITY; SAMPLE SIZE; SENSITIVITY AND SPECIFICITY; STATISTICAL ANALYSIS; STATISTICAL MODEL;

ALGORITHMS; COMPUTER SIMULATION; DATA INTERPRETATION, STATISTICAL; FOURIER ANALYSIS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, CHEMICAL; MODELS, STATISTICAL; REPRODUCIBILITY OF RESULTS; SAMPLE SIZE; SENSITIVITY AND SPECIFICITY;

EID: 47549113849     PISSN: 10907807     EISSN: 10960856     Source Type: Journal    
DOI: 10.1016/j.jmr.2008.05.011     Document Type: Article

References (21)

1. Ding K., and Gronenborn A.M. Novel 2D triple-resonance NMR experiments for sequential resonance assignments of proteins. J. Magn. Reson. 156 (2002) 262-268
2. Kim S., and Szyperski T. GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information. J. Am. Chem. Soc. 125 (2003) 1385-1393
3. Kupce E., and Freeman R. Projection-reconstruction of three-dimensional NMR spectra. J. Am. Chem. Soc. 125 (2003) 13958-13959
4. Barna J.C.J., and Laue E.D. Conventional and exponential sampling for 2D NMR experiments with application to a 2D NMR spectrum of a protein. J. Magn. Reson. 75 (1987) 384-389
5. Stern A.S., Li K.B., and Hoch J.C. Modern spectrum analysis in multidimensional NMR spectroscopy: comparison of linear-prediction extrapolation and maximum-entropy reconstruction. J. Am. Chem. Soc. 124 (2002) 1982-1993
6. Bretthorst G.L. Bayesian analysis I. Parameter estimation using quadrature NMR models. J. Magn. Reson. 88 (1990) 533-551
7. Chylla R.A., and Markley J.L. Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data. J. Biomol. NMR 5 (1995) 245-258
8. Hu H., De Angelis A.A., Mandelshtam V.A., and Shaka A.J. The multidimensional filter diagonalization method. J. Magn. Reson. 144 (2000) 357-366
9. Orekhov V.Y., Ibraghimov I.V., and Billeter M. MUNIN: a new approach to multi-dimensional NMR spectra interpretation. J. Biomol. NMR 20 (2001) 49-60
10. Trbovic N., Smirnov S., Zhang F., and Bruschweiler R. Covariance NMR spectroscopy by singular value decomposition. J. Magn. Reson. 171 (2004) 277-283
11. Mobli M., Stern A.S., and Hoch J.C. Spectral reconstruction methods in fast NMR: reduced dimensionality, random sampling and maximum entropy. J. Magn. Reson. 182 (2006) 96-105
12. Kupce E., and Freeman R. Fast multidimensional NMR: radial sampling of evolution space. J. Magn. Reson. 173 (2005) 317-321
13. Macura S., Huang Y., Sutter Y., and Ernst R.R. Two-dimensional chemical exchange and cross-relaxation spectroscopy of coupled nuclear spins. J. Magn. Reson. 43 (1981) 259-281
14. Bowyer P.J., Swanson A.G., and Morris G.A. Randomized acquisition for the suppression of systematic F1 artifacts in two-dimensional NMR spectroscopy. J. Magn. Reson. 140 (1999) 513-515
15. Blümich B. Stochastic NMR spectroscopy. Bull. Magn. Reson. 7 (1985) 5-26
16. Barna J.C.J., Laue E.D., Mayger M.R., Skilling J., and Worrall S.J.P. Exponential sampling: an alternative method for sampling in two dimensional NMR experiments. J. Magn. Reson. 73 (1987) 69
17. Kazimierczuk K., Zawadzka A., Kozminski W., and Zhukov I. Random sampling of evolution time space and Fourier transform processing. J. Biomol. NMR 36 (2006) 157-168
18. Pannetier N., Houben K., Blanchard L., and Marion D. Optimized 3D-NMR sampling for resonance assignment of partially unfolded proteins. J. Magn. Reson. 186 (2007) 142-149
19. Schmieder P., Stern A.S., Wagner G., and Hoch J.C. Application of nonlinear sampling schemes to COSY-type spectra. J. Biomol. NMR 3 (1993) 569-576
20. Schmieder P., Stern A.S., Wagner G., and Hoch J.C. Improved resolution in triple-resonance spectra by nonlinear sampling in the constant-time domain. J. Biomol. NMR 4 (1994) 483-490
21. Mobli M., Maciejewski M.W., Gryk M.R., and Hoch J.C. Automatic maximum entropy spectral reconstruction in NMR. J. Biomol. NMR 39 (2007) 133-139