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Volumn 10, Issue 3, 2014, Pages 203-208

Designable DNA-binding domains enable construction of logic circuits in mammalian cells

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID MOTIFS; ANIMALS; BINDING SITES; DNA; FLOW CYTOMETRY; HEK293 CELLS; HUMANS; LOGIC; PROTEIN STRUCTURE, TERTIARY; SYNTHETIC BIOLOGY;

EID: 84894091963     PISSN: 15524450     EISSN: 15524469     Source Type: Journal    
DOI: 10.1038/nchembio.1433     Document Type: Article
Times cited : (91)

References (39)
  • 1
    • 78651397316 scopus 로고    scopus 로고
    • Robust multicellular computing using genetically encoded nor gates and chemical 'wires
    • Tamsir A. Tabor J.J. & Voigt C.A. Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'. Nature 469 212-215 (2011).
    • (2011) Nature , vol.469 , pp. 212-215
    • Tamsir, A.1    Tabor, J.J.2    Voigt, C.A.3
  • 3
    • 66349125024 scopus 로고    scopus 로고
    • Synthetic gene networks that count
    • Friedland A.E. et al. Synthetic gene networks that count. Science 324 1199-1202 (2009).
    • (2009) Science , vol.324 , pp. 199-1202
    • Friedland, A.E.1
  • 4
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • DOI 10.1038/35002125
    • Elowitz M.B. & Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature 403 335-338 (2000). (Pubitemid 30062393)
    • (2000) Nature , vol.403 , Issue.6767 , pp. 335-338
    • Elowitz, M.B.1    Leibier, S.2
  • 5
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • DOI 10.1038/35002131
    • Gardner T.S. Cantor C.R. & Collins J.J. Construction of a genetic toggle switch in Escherichia coli. Nature 403 339-342 (2000). (Pubitemid 30062394)
    • (2000) Nature , vol.403 , Issue.6767 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 7
    • 84861865655 scopus 로고    scopus 로고
    • Rewritable digital data storage in live cells via engineered control of recombination directionality
    • Bonnet J. Subsoontorn P. & Endy D. Rewritable digital data storage in live cells via engineered control of recombination directionality. Proc. Natl. Acad. Sci. USA 109 8884-8889 (2012).
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 8884-8889
    • Bonnet, J.1    Subsoontorn, P.2    Endy, D.3
  • 8
    • 79959514813 scopus 로고    scopus 로고
    • A synthetic optogenetic transcription device enhances blood-glucose homeostasis in mice
    • Ye H. Daoud-El Baba M. Peng R.W. & Fussenegger M. A synthetic optogenetic transcription device enhances blood-glucose homeostasis in mice. Science 332 1565-1568 (2011).
    • (2011) Science , vol.332 , pp. 565-1568
    • Ye, H.1    Daoud-El Baba, M.2    Peng, R.W.3    Fussenegger, M.4
  • 10
    • 72149110399 scopus 로고    scopus 로고
    • Breaking the code of dna binding specificity of tal-type iii effectors
    • Boch J. et al. Breaking the code of DNA binding specificity of TAL-type III effectors. Science 326 1509-1512 (2009).
    • (2009) Science , vol.326 , pp. 509-1512
    • Boch, J.1
  • 11
    • 72149090954 scopus 로고    scopus 로고
    • A simple cipher governs dna recognition by tal effectors
    • Moscou M.J. & Bogdanove A.J. A simple cipher governs DNA recognition by TAL effectors. Science 326 1501 (2009).
    • (2009) Science , vol.326 , pp. 501
    • Moscou, M.J.1    Bogdanove, A.J.2
  • 12
    • 84867300642 scopus 로고    scopus 로고
    • Engineering synthetic tal effectors with orthogonal target sites
    • Garg A. Lohmueller J.J. Silver P.A. & Armel T.Z. Engineering synthetic TAL effectors with orthogonal target sites. Nucleic Acids Res. 40 7584-7595 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. 7584-7595
    • Garg, A.1    Lohmueller, J.J.2    Silver, P.A.3    Armel, T.Z.4
  • 13
    • 79960064013 scopus 로고    scopus 로고
    • Efficient design and assembly of custom talen and other tal effector-based constructs for dna targeting
    • Cermak T. et al. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res. 39 e82 (2011).
    • (2011) Nucleic Acids Res , vol.39
    • Cermak, T.1
  • 14
    • 79751487297 scopus 로고    scopus 로고
    • Efficient construction of sequence-specific tal effectors for modulating mammalian transcription
    • Zhang F. et al. Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription. Nat. Biotechnol. 29 149-153 (2011).
    • (2011) Nat. Biotechnol , vol.29 , pp. 49-153
    • Zhang, F.1
  • 15
    • 84858609338 scopus 로고    scopus 로고
    • Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology
    • Blount B.A. Weenink T. Vasylechko S. & Ellis T. Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology. PLoS ONE 7 e33279 (2012).
    • (2012) PLoS ONE , vol.7
    • Blount, B.A.1    Weenink, T.2    Vasylechko, S.3    Ellis, T.4
  • 16
    • 84864856835 scopus 로고    scopus 로고
    • Comprehensive interrogation of natural tale dna-binding modules and transcriptional repressor domains
    • Cong L. Zhou R. Kuo Y.C. Cunniff M. & Zhang F. Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains. Nat. Commun. 3 968 (2012).
    • (2012) Nat. Commun , vol.3 , pp. 968
    • Cong, L.1    Zhou, R.2    Kuo, Y.C.3    Cunniff, M.4    Zhang, F.5
  • 17
    • 84876557961 scopus 로고    scopus 로고
    • Quantitative analysis of tale-dna interactions suggests polarity effects
    • Meckler J.F. et al. Quantitative analysis of TALE-DNA interactions suggests polarity effects. Nucleic Acids Res. 41 4118-4128 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. 4118-4128
    • Meckler, J.F.1
  • 18
    • 0028183181 scopus 로고
    • The kruppel-Associated box-A (krab-A) domain of zinc finger proteins mediates transcriptional repression
    • Witzgall R. O'Leary E. Leaf A. Onaldi D. & Bonventre J.V. The Kruppel-Associated box-A (KRAB-A) domain of zinc finger proteins mediates transcriptional repression. Proc. Natl. Acad. Sci. USA 91 4514-4518 (1994).
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 4514-4518
    • Witzgall, R.1    O'Leary, E.2    Leaf, A.3    Onaldi, D.4    Bonventre, J.V.5
  • 19
    • 84874616818 scopus 로고    scopus 로고
    • Synergistic and tunable human gene activation by combinations of synthetic transcription factors
    • Perez-Pinera P. et al. Synergistic and tunable human gene activation by combinations of synthetic transcription factors. Nat. Methods 10 239-242 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 239-242
    • Perez-Pinera, P.1
  • 20
    • 84874627289 scopus 로고    scopus 로고
    • Robust synergistic regulation of human gene expression using tale activators
    • Maeder M.L. et al. Robust synergistic regulation of human gene expression using TALE activators. Nat. Methods 10 243-245 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 243-245
    • Maeder, M.L.1
  • 21
    • 4344703213 scopus 로고    scopus 로고
    • BioLogic gates enable logical transcription control in mammalian cells
    • DOI 10.1002/bit.20142
    • Kramer B.P. Fischer C. & Fussenegger M. BioLogic gates enable logical transcription control in mammalian cells. Biotechnol. Bioeng. 87 478-484 (2004). (Pubitemid 39150049)
    • (2004) Biotechnology and Bioengineering , vol.87 , Issue.4 , pp. 478-484
    • Kramer, B.P.1    Fischer, C.2    Fussenegger, M.3
  • 22
    • 84868619337 scopus 로고    scopus 로고
    • Genetic programs constructed from layered logic gates in single cells
    • Moon T.S. Lou C.B. Tamsir A. Stanton B.C. & Voigt C.A. Genetic programs constructed from layered logic gates in single cells. Nature 491 249-253 (2012).
    • (2012) Nature , vol.491 , pp. 249-253
    • Moon, T.S.1    Lou, C.B.2    Tamsir, A.3    Stanton, B.C.4    Voigt, C.A.5
  • 23
    • 0033767759 scopus 로고    scopus 로고
    • Streptogramin-based gene regulation systems for mammalian cells
    • Fussenegger M. et al. Streptogramin-based gene regulation systems for mammalian cells. Nat. Biotechnol. 18 1203-1208 (2000).
    • (2000) Nat. Biotechnol , vol.18 , pp. 203-1208
    • Fussenegger, M.1
  • 25
    • 84875230351 scopus 로고    scopus 로고
    • Synthetic circuits integrating logic and memory in living cells
    • Siuti P. Yazbek J. & Lu T.K. Synthetic circuits integrating logic and memory in living cells. Nat. Biotechnol. 31 448-452 (2013).
    • (2013) Nat. Biotechnol , vol.31 , pp. 448-452
    • Siuti, P.1    Yazbek, J.2    Lu, T.K.3
  • 27
    • 33745454125 scopus 로고    scopus 로고
    • Synthetic biology: New engineering rules for an emerging discipline
    • 0028
    • Andrianantoandro E. Basu S. Karig D.K. & Weiss R. Synthetic biology: new engineering rules for an emerging discipline. Mol. Syst. Biol. 2 2006.0028 (2006).
    • (2006) Mol. Syst. Biol , vol.2 , pp. 2006
    • Andrianantoandro, E.1    Basu, S.2    Karig, D.K.3    Weiss, R.4
  • 28
    • 84860747716 scopus 로고    scopus 로고
    • Flash assembly of talens for high-throughput genome editing
    • Reyon D. et al. FLASH assembly of TALENs for high-throughput genome editing. Nat. Biotechnol. 30 460-465 (2012).
    • (2012) Nat. Biotechnol , vol.30 , pp. 460-465
    • Reyon, D.1
  • 29
    • 84866879789 scopus 로고    scopus 로고
    • Iterative capped assembly: Rapid and scalable synthesis of repeat-module dna such as tal effectors from individual monomers
    • Briggs A.W. et al. Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers. Nucleic Acids Res. 40 e117 (2012).
    • (2012) Nucleic Acids Res , vol.40
    • Briggs, A.W.1
  • 30
    • 84872203111 scopus 로고    scopus 로고
    • A ligation-independent cloning technique for high-throughput assembly of transcription activator-like effector genes
    • Schmid-Burgk J.L. Schmidt T. Kaiser V. Honing K. & Hornung V. A ligation-independent cloning technique for high-throughput assembly of transcription activator-like effector genes. Nat. Biotechnol. 31 76-81 (2013).
    • (2013) Nat. Biotechnol , vol.31 , pp. 76-81
    • Schmid-Burgk, J.L.1    Schmidt, T.2    Kaiser, V.3    Honing, K.4    Hornung, V.5
  • 32
    • 84862180741 scopus 로고    scopus 로고
    • A tunable zinc finger-based framework for boolean logic computation in mammalian cells
    • Lohmueller J.J. Armel T.Z. & Silver P.A. A tunable zinc finger-based framework for Boolean logic computation in mammalian cells. Nucleic Acids Res. 40 5180-5187 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. 5180-5187
    • Lohmueller, J.J.1    Armel, T.Z.2    Silver, P.A.3
  • 33
    • 84884160273 scopus 로고    scopus 로고
    • Cas9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
    • Mali P. et al. CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat. Biotechnol. 31 833-838 (2013).
    • (2013) Nat. Biotechnol , vol.31 , pp. 833-838
    • Mali, P.1
  • 34
    • 84880571335 scopus 로고    scopus 로고
    • Crispr-mediated modular rna-guided regulation of transcription in eukaryotes
    • Gilbert L.A. et al. CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell 154 442-451 (2013).
    • (2013) Cell , vol.154 , pp. 442-451
    • Gilbert, L.A.1
  • 35
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing crispr as an rna-guided platform for sequence-specific control of gene expression
    • Qi L.S. et al. Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 152 1173-1183 (2013).
    • (2013) Cell , vol.152 , pp. 173-1183
    • Qi, L.S.1
  • 36
    • 78651406505 scopus 로고    scopus 로고
    • Distributed biological computation with multicellular engineered networks
    • Regot S. et al. Distributed biological computation with multicellular engineered networks. Nature 469 207-211 (2011).
    • (2011) Nature , vol.469 , pp. 207-211
    • Regot, S.1
  • 37
    • 52649173346 scopus 로고    scopus 로고
    • Intronically encoded sirnas improve dynamic range of mammalian gene regulation systems and toggle switch
    • Greber D. El-Baba M.D. & Fussenegger M. Intronically encoded siRNAs improve dynamic range of mammalian gene regulation systems and toggle switch. Nucleic Acids Res. 36 e101 (2008).
    • (2008) Nucleic Acids Res , vol.36
    • Greber, D.1    El-Baba, M.D.2    Fussenegger, M.3
  • 38
    • 80052456127 scopus 로고    scopus 로고
    • Multi-input rnai-based logic circuit for identification of specific cancer cells
    • Xie Z. Wroblewska L. Prochazka L. Weiss R. & Benenson Y. Multi-input RNAi-based logic circuit for identification of specific cancer cells. Science 333 1307-1311 (2011).
    • (2011) Science , vol.333 , pp. 307-1311
    • Xie, Z.1    Wroblewska, L.2    Prochazka, L.3    Weiss, R.4    Benenson, Y.5
  • 39
    • 78650633687 scopus 로고    scopus 로고
    • A tunable dual-promoter integrator for targeting of cancer cells
    • Nissim L. & Bar-Ziv R.H. A tunable dual-promoter integrator for targeting of cancer cells. Mol. Syst. Biol. 6 444 (2010).
    • (2010) Mol. Syst. Biol , vol.6 , pp. 444
    • Nissim, L.1    Bar-Ziv, R.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.