-
1
-
-
84876871047
-
Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put
-
Simon J.A., Kingston R.E. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Mol Cell 2013, 49:808-824.
-
(2013)
Mol Cell
, vol.49
, pp. 808-824
-
-
Simon, J.A.1
Kingston, R.E.2
-
2
-
-
84860366510
-
A view of nuclear Polycomb bodies
-
Pirrotta V., Li H.-B. A view of nuclear Polycomb bodies. Curr Opin Genet Dev 2012, 22:101-109.
-
(2012)
Curr Opin Genet Dev
, vol.22
, pp. 101-109
-
-
Pirrotta, V.1
Li, H.-B.2
-
3
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil A.M., Guttman M., Huarte M., Garber M., Raj A., Morales D.R., Thomas K., Presser A., Bernstein B.E., van Oudenaarden A., et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009, 106:11667-11672.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Morales, D.R.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
van Oudenaarden, A.10
-
4
-
-
78650253763
-
Genome-wide identification of polycomb-associated RNAs by RIP-seq
-
Zhao J., Ohsumi T.K., Kung J.T., Ogawa Y., Grau D.J., Sarma K., Song J.J., Kingston R.E., Borowsky M., Lee J.T. Genome-wide identification of polycomb-associated RNAs by RIP-seq. Mol Cell 2010, 40:939-953.
-
(2010)
Mol Cell
, vol.40
, pp. 939-953
-
-
Zhao, J.1
Ohsumi, T.K.2
Kung, J.T.3
Ogawa, Y.4
Grau, D.J.5
Sarma, K.6
Song, J.J.7
Kingston, R.E.8
Borowsky, M.9
Lee, J.T.10
-
5
-
-
84863718299
-
Intronic RNAs mediate EZH2 regulation of epigenetic targets
-
Guil S., Soler M., Portela A., Carrère J., Fonalleras E., Gómez A., Villanueva A., Esteller M. Intronic RNAs mediate EZH2 regulation of epigenetic targets. Nat Struct Mol Biol 2012, 19:664-670.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 664-670
-
-
Guil, S.1
Soler, M.2
Portela, A.3
Carrère, J.4
Fonalleras, E.5
Gómez, A.6
Villanueva, A.7
Esteller, M.8
-
6
-
-
84887460647
-
PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells
-
Kaneko S., Son J., Shen S.S., Reinberg D., Bonasio R. PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells. Nat Struct Mol Biol 2013, 10.1038/nsmb.2700.
-
(2013)
Nat Struct Mol Biol
-
-
Kaneko, S.1
Son, J.2
Shen, S.S.3
Reinberg, D.4
Bonasio, R.5
-
8
-
-
84875418596
-
Noncoding RNA and Polycomb recruitment
-
Brockdorff N. Noncoding RNA and Polycomb recruitment. RNA 2013, 19:429-442.
-
(2013)
RNA
, vol.19
, pp. 429-442
-
-
Brockdorff, N.1
-
9
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn J.L., Kertesz M., Wang J.K., Squazzo S.L., Xu X., Brugmann S.A., Goodnough L.H., Helms J.A., Farnham P.J., Segal E., et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007, 129:1311-1323.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
-
10
-
-
84885740857
-
Targeted disruption of hotair leads to homeotic transformation and gene derepression
-
Li L., Liu B., Wapinski O.L., Tsai M.-C., Qu K., Zhang J., Carlson J.C., Lin M., Fang F., Gupta R.A., et al. Targeted disruption of hotair leads to homeotic transformation and gene derepression. Cell Rep 2013, 5:3-12.
-
(2013)
Cell Rep
, vol.5
, pp. 3-12
-
-
Li, L.1
Liu, B.2
Wapinski, O.L.3
Tsai, M.-C.4
Qu, K.5
Zhang, J.6
Carlson, J.C.7
Lin, M.8
Fang, F.9
Gupta, R.A.10
-
11
-
-
80054756754
-
Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
-
Chu C., Qu K., Zhong F.L., Artandi S.E., Chang H.Y. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Mol Cell 2011, 44:667-678.
-
(2011)
Mol Cell
, vol.44
, pp. 667-678
-
-
Chu, C.1
Qu, K.2
Zhong, F.L.3
Artandi, S.E.4
Chang, H.Y.5
-
12
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta R.A., Shah N., Wang K.C., Kim J., Horlings H.M., Wong D.J., Tsai M.-C., Hung T., Argani P., Rinn J.L., et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010, 464:1071-1076.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.-C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
-
13
-
-
84862908875
-
The genomic binding sites of a noncoding RNA
-
Simon M.D., Wang C.I., Kharchenko P.V., West J.A., Chapman B.A., Alekseyenko A.A., Borowsky M.L., Kuroda M.I., Kingston R.E. The genomic binding sites of a noncoding RNA. Proc Natl Acad Sci U S A 2011, 108:20497-20502.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 20497-20502
-
-
Simon, M.D.1
Wang, C.I.2
Kharchenko, P.V.3
West, J.A.4
Chapman, B.A.5
Alekseyenko, A.A.6
Borowsky, M.L.7
Kuroda, M.I.8
Kingston, R.E.9
-
14
-
-
84890549512
-
High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation
-
Simon M.D., Pinter S.F., Fang R., Sarma K., Rutenberg-Schoenberg M., Bowman S.K., Kesner B.A., Maier V.K., Kingston R.E., Lee J.T. High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation. Nature 2013, 10.1038/nature12719.
-
(2013)
Nature
-
-
Simon, M.D.1
Pinter, S.F.2
Fang, R.3
Sarma, K.4
Rutenberg-Schoenberg, M.5
Bowman, S.K.6
Kesner, B.A.7
Maier, V.K.8
Kingston, R.E.9
Lee, J.T.10
-
15
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai M.-C., Manor O., Wan Y., Mosammaparast N., Wang J.K., Lan F., Shi Y., Segal E., Chang H.Y. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010, 329:689-693.
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.-C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
Shi, Y.7
Segal, E.8
Chang, H.Y.9
-
16
-
-
81055140863
-
NcRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs
-
Yang L., Lin C., Liu W., Zhang J., Ohgi K.A., Grinstein J.D., Dorrestein P.C., Rosenfeld M.G. ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs. Cell 2011, 147:773-788.
-
(2011)
Cell
, vol.147
, pp. 773-788
-
-
Yang, L.1
Lin, C.2
Liu, W.3
Zhang, J.4
Ohgi, K.A.5
Grinstein, J.D.6
Dorrestein, P.C.7
Rosenfeld, M.G.8
-
17
-
-
77953096072
-
Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by Polycomb CBX7 in transcriptional silencing of INK4a
-
Yap K.L., Li S., Muñoz-Cabello A.M., Raguz S., Zeng L., Mujtaba S., Gil J., Walsh M.J., Zhou M.-M. Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by Polycomb CBX7 in transcriptional silencing of INK4a. Mol Cell 2010, 38:662-674.
-
(2010)
Mol Cell
, vol.38
, pp. 662-674
-
-
Yap, K.L.1
Li, S.2
Muñoz-Cabello, A.M.3
Raguz, S.4
Zeng, L.5
Mujtaba, S.6
Gil, J.7
Walsh, M.J.8
Zhou, M.-M.9
-
18
-
-
84896735322
-
Surviving an identity crisis: a revised view of chromatin insulators in the genomics era
-
Matzat L.H., Lei E.P. Surviving an identity crisis: a revised view of chromatin insulators in the genomics era. Biochim Biophys Acta 2013, 10.1016/j.bbagrm.2013.10.007.
-
(2013)
Biochim Biophys Acta
-
-
Matzat, L.H.1
Lei, E.P.2
-
19
-
-
0842310349
-
CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species
-
Yusufzai T.M., Tagami H., Nakatani Y., Felsenfeld G. CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species. Mol Cell 2004, 13:291-298.
-
(2004)
Mol Cell
, vol.13
, pp. 291-298
-
-
Yusufzai, T.M.1
Tagami, H.2
Nakatani, Y.3
Felsenfeld, G.4
-
20
-
-
78349252731
-
Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA
-
Yao H., Brick K., Evrard Y., Xiao T., Camerini-Otero R.D., Felsenfeld G. Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA. Genes Dev 2010, 24:2543-2555.
-
(2010)
Genes Dev
, vol.24
, pp. 2543-2555
-
-
Yao, H.1
Brick, K.2
Evrard, Y.3
Xiao, T.4
Camerini-Otero, R.D.5
Felsenfeld, G.6
-
21
-
-
33746472891
-
RNA interference machinery influences the nuclear organization of a chromatin insulator
-
Lei E.P., Corces V.G. RNA interference machinery influences the nuclear organization of a chromatin insulator. Nat Genet 2006, 38:936-941.
-
(2006)
Nat Genet
, vol.38
, pp. 936-941
-
-
Lei, E.P.1
Corces, V.G.2
-
22
-
-
84860388943
-
RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function
-
Moshkovich N., Nisha P., Boyle P.J., Thompson B.A., Dale R.K., Lei E.P. RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function. Genes Dev 2011, 25:1686-1701.
-
(2011)
Genes Dev
, vol.25
, pp. 1686-1701
-
-
Moshkovich, N.1
Nisha, P.2
Boyle, P.J.3
Thompson, B.A.4
Dale, R.K.5
Lei, E.P.6
-
23
-
-
77958472025
-
The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation
-
Tian D., Sun S., Lee J.T. The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation. Cell 2010, 143:390-403.
-
(2010)
Cell
, vol.143
, pp. 390-403
-
-
Tian, D.1
Sun, S.2
Lee, J.T.3
-
24
-
-
84879376976
-
Jpx RNA activates Xist by evicting CTCF
-
Sun S., Del Rosario B.C., Szanto A., Ogawa Y., Jeon Y., Lee J.T. Jpx RNA activates Xist by evicting CTCF. Cell 2013, 153:1537-1551.
-
(2013)
Cell
, vol.153
, pp. 1537-1551
-
-
Sun, S.1
Del Rosario, B.C.2
Szanto, A.3
Ogawa, Y.4
Jeon, Y.5
Lee, J.T.6
-
25
-
-
84885310526
-
Messenger RNA is a functional component of a chromatin insulator complex
-
Matzat L.H., Dale R.K., Lei E.P. Messenger RNA is a functional component of a chromatin insulator complex. EMBO Rep 2013, 14:916-922.
-
(2013)
EMBO Rep
, vol.14
, pp. 916-922
-
-
Matzat, L.H.1
Dale, R.K.2
Lei, E.P.3
-
27
-
-
84855940430
-
Dosage compensation in Drosophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription
-
Conrad T., Akhtar A. Dosage compensation in Drosophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription. Nat Rev Genet 2011, 13:123-134.
-
(2011)
Nat Rev Genet
, vol.13
, pp. 123-134
-
-
Conrad, T.1
Akhtar, A.2
-
28
-
-
84880421665
-
ATP-dependent roX RNA remodeling by the helicase maleless enables specific association of MSL proteins
-
Maenner S., Müller M., Fröhlich J., Langer D., Becker P.B. ATP-dependent roX RNA remodeling by the helicase maleless enables specific association of MSL proteins. Mol Cell 2013, 51:174-184.
-
(2013)
Mol Cell
, vol.51
, pp. 174-184
-
-
Maenner, S.1
Müller, M.2
Fröhlich, J.3
Langer, D.4
Becker, P.B.5
-
29
-
-
84880429542
-
Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila
-
Ilik I.A., Quinn J.J., Georgiev P., Tavares-Cadete F., Maticzka D., Toscano S., Wan Y., Spitale R.C., Luscombe N., Backofen R., et al. Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila. Mol Cell 2013, 51:156-173.
-
(2013)
Mol Cell
, vol.51
, pp. 156-173
-
-
Ilik, I.A.1
Quinn, J.J.2
Georgiev, P.3
Tavares-Cadete, F.4
Maticzka, D.5
Toscano, S.6
Wan, Y.7
Spitale, R.C.8
Luscombe, N.9
Backofen, R.10
-
30
-
-
83055184268
-
Imaging of RNA in live cells
-
Armitage B.A. Imaging of RNA in live cells. Curr Opin Chem Biol 2011, 15:806-812.
-
(2011)
Curr Opin Chem Biol
, vol.15
, pp. 806-812
-
-
Armitage, B.A.1
|