-
1
-
-
0034650492
-
A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry
-
Rappsilber, J.; Siniossoglou, S.; Hurt, E. C.; Mann, M. A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry Anal. Chem. 2000, 72 (2) 267-75
-
(2000)
Anal. Chem.
, vol.72
, Issue.2
, pp. 267-275
-
-
Rappsilber, J.1
Siniossoglou, S.2
Hurt, E.C.3
Mann, M.4
-
2
-
-
0034705128
-
High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry
-
Young, M. M.; Tang, N.; Hempel, J. C.; Oshiro, C. M.; Taylor, E. W.; Kuntz, I. D.; Gibson, B. W.; Dollinger, G. High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry Proc. Natl. Acad. Sci. U. S. A. 2000, 97 (11) 5802-6
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, Issue.11
, pp. 5802-5806
-
-
Young, M.M.1
Tang, N.2
Hempel, J.C.3
Oshiro, C.M.4
Taylor, E.W.5
Kuntz, I.D.6
Gibson, B.W.7
Dollinger, G.8
-
3
-
-
77149146167
-
Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry
-
Chen, Z. A.; Jawhari, A.; Fischer, L.; Buchen, C.; Tahir, S.; Kamenski, T.; Rasmussen, M.; Lariviere, L.; Bukowski-Wills, J. C.; Nilges, M.; Cramer, P.; Rappsilber, J. Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry EMBO J. 2010, 29 (4) 717-26
-
(2010)
EMBO J.
, vol.29
, Issue.4
, pp. 717-726
-
-
Chen, Z.A.1
Jawhari, A.2
Fischer, L.3
Buchen, C.4
Tahir, S.5
Kamenski, T.6
Rasmussen, M.7
Lariviere, L.8
Bukowski-Wills, J.C.9
Nilges, M.10
Cramer, P.11
Rappsilber, J.12
-
4
-
-
84857134729
-
Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach
-
Lasker, K.; Forster, F.; Bohn, S.; Walzthoeni, T.; Villa, E.; Unverdorben, P.; Beck, F.; Aebersold, R.; Sali, A.; Baumeister, W. Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach Proc. Natl. Acad. Sci. U. S. A 2012, 109 (5) 1380-7
-
(2012)
Proc. Natl. Acad. Sci. U. S. A
, vol.109
, Issue.5
, pp. 1380-1387
-
-
Lasker, K.1
Forster, F.2
Bohn, S.3
Walzthoeni, T.4
Villa, E.5
Unverdorben, P.6
Beck, F.7
Aebersold, R.8
Sali, A.9
Baumeister, W.10
-
5
-
-
84861102204
-
The molecular architecture of the eukaryotic chaperonin TRiC/CCT
-
Leitner, A.; Joachimiak, L. A.; Bracher, A.; Monkemeyer, L.; Walzthoeni, T.; Chen, B.; Pechmann, S.; Holmes, S.; Cong, Y.; Ma, B.; Ludtke, S.; Chiu, W.; Hartl, F. U.; Aebersold, R.; Frydman, J. The molecular architecture of the eukaryotic chaperonin TRiC/CCT Structure 2012, 20 (5) 814-25
-
(2012)
Structure
, vol.20
, Issue.5
, pp. 814-825
-
-
Leitner, A.1
Joachimiak, L.A.2
Bracher, A.3
Monkemeyer, L.4
Walzthoeni, T.5
Chen, B.6
Pechmann, S.7
Holmes, S.8
Cong, Y.9
Ma, B.10
Ludtke, S.11
Chiu, W.12
Hartl, F.U.13
Aebersold, R.14
Frydman, J.15
-
6
-
-
84866095385
-
Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry
-
Herzog, F.; Kahraman, A.; Boehringer, D.; Mak, R.; Bracher, A.; Walzthoeni, T.; Leitner, A.; Beck, M.; Hartl, F. U.; Ban, N.; Malmstrom, L.; Aebersold, R. Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry Science 2012, 337 (6100) 1348-52
-
(2012)
Science
, vol.337
, Issue.6100
, pp. 1348-1352
-
-
Herzog, F.1
Kahraman, A.2
Boehringer, D.3
Mak, R.4
Bracher, A.5
Walzthoeni, T.6
Leitner, A.7
Beck, M.8
Hartl, F.U.9
Ban, N.10
Malmstrom, L.11
Aebersold, R.12
-
7
-
-
33744468254
-
Structure and dynamics of dark-state bovine rhodopsin revealed by chemical cross-linking and high-resolution mass spectrometry
-
Jacobsen, R. B.; Sale, K. L.; Ayson, M. J.; Novak, P.; Hong, J.; Lane, P.; Wood, N. L.; Kruppa, G. H.; Young, M. M.; Schoeniger, J. S. Structure and dynamics of dark-state bovine rhodopsin revealed by chemical cross-linking and high-resolution mass spectrometry Protein Sci. 2006, 15 (6) 1303-17
-
(2006)
Protein Sci.
, vol.15
, Issue.6
, pp. 1303-1317
-
-
Jacobsen, R.B.1
Sale, K.L.2
Ayson, M.J.3
Novak, P.4
Hong, J.5
Lane, P.6
Wood, N.L.7
Kruppa, G.H.8
Young, M.M.9
Schoeniger, J.S.10
-
8
-
-
0042349690
-
Chemical cross-linking and mass spectrometry for protein structural modeling
-
Back, J. W.; de Jong, L.; Muijsers, A. O.; de Koster, C. G. Chemical cross-linking and mass spectrometry for protein structural modeling J. Mol. Biol. 2003, 331 (2) 303-13
-
(2003)
J. Mol. Biol.
, vol.331
, Issue.2
, pp. 303-313
-
-
Back, J.W.1
De Jong, L.2
Muijsers, A.O.3
De Koster, C.G.4
-
9
-
-
77955381399
-
Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics
-
Leitner, A.; Walzthoeni, T.; Kahraman, A.; Herzog, F.; Rinner, O.; Beck, M.; Aebersold, R. Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics Mol. Cell. Proteomics 2010, 9 (8) 1634-49
-
(2010)
Mol. Cell. Proteomics
, vol.9
, Issue.8
, pp. 1634-1649
-
-
Leitner, A.1
Walzthoeni, T.2
Kahraman, A.3
Herzog, F.4
Rinner, O.5
Beck, M.6
Aebersold, R.7
-
10
-
-
49649097784
-
Protein structure determination using a combination of cross-linking, mass spectrometry, and molecular modeling
-
Mouradov, D.; King, G.; Ross, I. L.; Forwood, J. K.; Hume, D. A.; Sinz, A.; Martin, J. L.; Kobe, B.; Huber, T. Protein structure determination using a combination of cross-linking, mass spectrometry, and molecular modeling Methods Mol. Biol. 2008, 426, 459-74
-
(2008)
Methods Mol. Biol.
, vol.426
, pp. 459-474
-
-
Mouradov, D.1
King, G.2
Ross, I.L.3
Forwood, J.K.4
Hume, D.A.5
Sinz, A.6
Martin, J.L.7
Kobe, B.8
Huber, T.9
-
11
-
-
84873988417
-
Chemical cross-linkers for protein structure studies by mass spectrometry
-
Paramelle, D.; Miralles, G.; Subra, G.; Martinez, J. Chemical cross-linkers for protein structure studies by mass spectrometry Proteomics 2013, 13 (3-4) 438-56
-
(2013)
Proteomics
, vol.13
, Issue.34
, pp. 438-456
-
-
Paramelle, D.1
Miralles, G.2
Subra, G.3
Martinez, J.4
-
12
-
-
79851513173
-
The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes
-
Rappsilber, J. The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes J. Struct. Biol. 2011, 173 (3) 530-40
-
(2011)
J. Struct. Biol.
, vol.173
, Issue.3
, pp. 530-540
-
-
Rappsilber, J.1
-
13
-
-
33745742438
-
Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions
-
Sinz, A. Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions Mass Spectrom. Rev. 2006, 25 (4) 663-82
-
(2006)
Mass Spectrom. Rev.
, vol.25
, Issue.4
, pp. 663-682
-
-
Sinz, A.1
-
14
-
-
77956058146
-
Investigation of protein-protein interactions in living cells by chemical crosslinking and mass spectrometry
-
Sinz, A. Investigation of protein-protein interactions in living cells by chemical crosslinking and mass spectrometry Anal Bioanal Chem 2010, 397 (8) 3433-40
-
(2010)
Anal Bioanal Chem
, vol.397
, Issue.8
, pp. 3433-3440
-
-
Sinz, A.1
-
15
-
-
23844481127
-
Unambiguous assignment of intramolecular chemical cross-links in modified mammalian membrane proteins by Fourier transform-tandem mass spectrometry
-
Novak, P.; Haskins, W. E.; Ayson, M. J.; Jacobsen, R. B.; Schoeniger, J. S.; Leavell, M. D.; Young, M. M.; Kruppa, G. H. Unambiguous assignment of intramolecular chemical cross-links in modified mammalian membrane proteins by Fourier transform-tandem mass spectrometry Anal. Chem. 2005, 77 (16) 5101-6
-
(2005)
Anal. Chem.
, vol.77
, Issue.16
, pp. 5101-5106
-
-
Novak, P.1
Haskins, W.E.2
Ayson, M.J.3
Jacobsen, R.B.4
Schoeniger, J.S.5
Leavell, M.D.6
Young, M.M.7
Kruppa, G.H.8
-
16
-
-
0035326345
-
Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis
-
Muller, D. R.; Schindler, P.; Towbin, H.; Wirth, U.; Voshol, H.; Hoving, S.; Steinmetz, M. O. Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis Anal. Chem. 2001, 73 (9) 1927-34
-
(2001)
Anal. Chem.
, vol.73
, Issue.9
, pp. 1927-1934
-
-
Muller, D.R.1
Schindler, P.2
Towbin, H.3
Wirth, U.4
Voshol, H.5
Hoving, S.6
Steinmetz, M.O.7
-
17
-
-
0035564728
-
A new crosslinker for mass spectrometric analysis of the quaternary structure of protein complexes
-
Back, J. W.; Hartog, A. F.; Dekker, H. L.; Muijsers, A. O.; de Koning, L. J.; de Jong, L. A new crosslinker for mass spectrometric analysis of the quaternary structure of protein complexes J. Am. Soc. Mass Spectrom. 2001, 12 (2) 222-7
-
(2001)
J. Am. Soc. Mass Spectrom.
, vol.12
, Issue.2
, pp. 222-227
-
-
Back, J.W.1
Hartog, A.F.2
Dekker, H.L.3
Muijsers, A.O.4
De Koning, L.J.5
De Jong, L.6
-
18
-
-
78651092959
-
Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes
-
002212
-
Kao, A.; Chiu, C. L.; Vellucci, D.; Yang, Y.; Patel, V. R.; Guan, S.; Randall, A.; Baldi, P.; Rychnovsky, S. D.; Huang, L. Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes Mol. Cell. Proteomics 2011, 10 (1) M110 002212
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.1
, pp. 110
-
-
Kao, A.1
Chiu, C.L.2
Vellucci, D.3
Yang, Y.4
Patel, V.R.5
Guan, S.6
Randall, A.7
Baldi, P.8
Rychnovsky, S.D.9
Huang, L.10
-
19
-
-
66149192287
-
Synthesis of biotin-tagged chemical cross-linkers and their applications for mass spectrometry
-
Kang, S.; Mou, L.; Lanman, J.; Velu, S.; Brouillette, W. J.; Prevelige, P. E., Jr. Synthesis of biotin-tagged chemical cross-linkers and their applications for mass spectrometry Rapid Commun. Mass Spectrom. 2009, 23 (11) 1719-26
-
(2009)
Rapid Commun. Mass Spectrom.
, vol.23
, Issue.11
, pp. 1719-1726
-
-
Kang, S.1
Mou, L.2
Lanman, J.3
Velu, S.4
Brouillette, W.J.5
Prevelige, Jr.P.E.6
-
20
-
-
77958022947
-
An isotopically coded CID-cleavable biotinylated cross-linker for structural proteomics
-
001420
-
Petrotchenko, E. V.; Serpa, J. J.; Borchers, C. H. An isotopically coded CID-cleavable biotinylated cross-linker for structural proteomics Mol. Cell. Proteomics 2011, 10 (2) M110 001420
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.2
, pp. 110
-
-
Petrotchenko, E.V.1
Serpa, J.J.2
Borchers, C.H.3
-
21
-
-
0041846956
-
MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides
-
Schilling, B.; Row, R. H.; Gibson, B. W.; Guo, X.; Young, M. M. MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides J. Am. Soc. Mass Spectrom. 2003, 14 (8) 834-50
-
(2003)
J. Am. Soc. Mass Spectrom.
, vol.14
, Issue.8
, pp. 834-850
-
-
Schilling, B.1
Row, R.H.2
Gibson, B.W.3
Guo, X.4
Young, M.M.5
-
22
-
-
77957747467
-
Mammalian tropomodulins nucleate actin polymerization via their actin monomer binding and filament pointed end-capping activities
-
Yamashiro, S.; Speicher, K. D.; Speicher, D. W.; Fowler, V. M. Mammalian tropomodulins nucleate actin polymerization via their actin monomer binding and filament pointed end-capping activities J. Biol. Chem. 2010, 285 (43) 33265-80
-
(2010)
J. Biol. Chem.
, vol.285
, Issue.43
, pp. 33265-33280
-
-
Yamashiro, S.1
Speicher, K.D.2
Speicher, D.W.3
Fowler, V.M.4
-
23
-
-
79960906597
-
Molecular architecture of mouse activating NKR-P1 receptors
-
Kolenko, P.; Rozbesky, D.; Vanek, O.; Kopecky, V., Jr.; Hofbauerova, K.; Novak, P.; Pompach, P.; Hasek, J.; Skalova, T.; Bezouska, K.; Dohnalek, J. Molecular architecture of mouse activating NKR-P1 receptors J Struct Biol 2011, 175 (3) 434-41
-
(2011)
J Struct Biol
, vol.175
, Issue.3
, pp. 434-441
-
-
Kolenko, P.1
Rozbesky, D.2
Vanek, O.3
Kopecky, Jr.V.4
Hofbauerova, K.5
Novak, P.6
Pompach, P.7
Hasek, J.8
Skalova, T.9
Bezouska, K.10
Dohnalek, J.11
-
24
-
-
84870202411
-
Cross-linking mass spectrometry and mutagenesis confirm the functional importance of surface interactions between CYP3A4 and holo/apo cytochrome b(5)
-
Zhao, C.; Gao, Q.; Roberts, A. G.; Shaffer, S. A.; Doneanu, C. E.; Xue, S.; Goodlett, D. R.; Nelson, S. D.; Atkins, W. M. Cross-linking mass spectrometry and mutagenesis confirm the functional importance of surface interactions between CYP3A4 and holo/apo cytochrome b(5) Biochemistry 2012, 51 (47) 9488-500
-
(2012)
Biochemistry
, vol.51
, Issue.47
, pp. 9488-9500
-
-
Zhao, C.1
Gao, Q.2
Roberts, A.G.3
Shaffer, S.A.4
Doneanu, C.E.5
Xue, S.6
Goodlett, D.R.7
Nelson, S.D.8
Atkins, W.M.9
-
25
-
-
84874839394
-
Architecture and assembly of HIV integrase multimers in the absence of DNA substrates
-
Bojja, R. S.; Andrake, M. D.; Merkel, G.; Weigand, S.; Dunbrack, R. L., Jr.; Skalka, A. M. Architecture and assembly of HIV integrase multimers in the absence of DNA substrates J. Biol. Chem. 2013, 288 (10) 7373-86
-
(2013)
J. Biol. Chem.
, vol.288
, Issue.10
, pp. 7373-7386
-
-
Bojja, R.S.1
Andrake, M.D.2
Merkel, G.3
Weigand, S.4
Dunbrack, Jr.R.L.5
Skalka, A.M.6
-
26
-
-
84864381355
-
The conserved His-144 in the PsbP protein is important for the interaction between the PsbP N-terminus and the Cyt b559 subunit of photosystem II
-
Ido, K.; Kakiuchi, S.; Uno, C.; Nishimura, T.; Fukao, Y.; Noguchi, T.; Sato, F.; Ifuku, K. The conserved His-144 in the PsbP protein is important for the interaction between the PsbP N-terminus and the Cyt b559 subunit of photosystem II J. Biol. Chem. 2012, 287 (31) 26377-87
-
(2012)
J. Biol. Chem.
, vol.287
, Issue.31
, pp. 26377-26387
-
-
Ido, K.1
Kakiuchi, S.2
Uno, C.3
Nishimura, T.4
Fukao, Y.5
Noguchi, T.6
Sato, F.7
Ifuku, K.8
-
27
-
-
81055130048
-
Psb27, a transiently associated protein, binds to the chlorophyll binding protein CP43 in photosystem II assembly intermediates
-
Liu, H.; Huang, R. Y.; Chen, J.; Gross, M. L.; Pakrasi, H. B. Psb27, a transiently associated protein, binds to the chlorophyll binding protein CP43 in photosystem II assembly intermediates Proc. Natl. Acad. Sci. U. S. A. 2011, 108 (45) 18536-41
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, Issue.45
, pp. 18536-18541
-
-
Liu, H.1
Huang, R.Y.2
Chen, J.3
Gross, M.L.4
Pakrasi, H.B.5
-
28
-
-
82555186441
-
Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links
-
Mayne, S. L.; Patterton, H. G. Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links Briefings Bioinf. 2011, 12 (6) 660-71
-
(2011)
Briefings Bioinf.
, vol.12
, Issue.6
, pp. 660-671
-
-
Mayne, S.L.1
Patterton, H.G.2
-
29
-
-
77951211996
-
A fused alpha-beta ″mini-spectrin″ mimics the intact erythrocyte spectrin head-to-head tetramer
-
Harper, S. L.; Li, D.; Maksimova, Y.; Gallagher, P. G.; Speicher, D. W. A fused alpha-beta ″mini-spectrin″ mimics the intact erythrocyte spectrin head-to-head tetramer J. Biol. Chem. 2010, 285 (14) 11003-12
-
(2010)
J. Biol. Chem.
, vol.285
, Issue.14
, pp. 11003-11012
-
-
Harper, S.L.1
Li, D.2
Maksimova, Y.3
Gallagher, P.G.4
Speicher, D.W.5
-
30
-
-
79960125931
-
Plasma biomarker discovery using 3D protein profiling coupled with label-free quantitation
-
Beer, L. A.; Tang, H. Y.; Barnhart, K. T.; Speicher, D. W. Plasma biomarker discovery using 3D protein profiling coupled with label-free quantitation Methods Mol. Biol. 2011, 728, 3-27
-
(2011)
Methods Mol. Biol.
, vol.728
, pp. 3-27
-
-
Beer, L.A.1
Tang, H.Y.2
Barnhart, K.T.3
Speicher, D.W.4
-
31
-
-
0026653822
-
Properties of human red cell spectrin heterodimer (side-to-side) assembly and identification of an essential nucleation site
-
Speicher, D. W.; Weglarz, L.; DeSilva, T. M. Properties of human red cell spectrin heterodimer (side-to-side) assembly and identification of an essential nucleation site J. Biol. Chem. 1992, 267 (21) 14775-82
-
(1992)
J. Biol. Chem.
, vol.267
, Issue.21
, pp. 14775-14782
-
-
Speicher, D.W.1
Weglarz, L.2
Desilva, T.M.3
-
32
-
-
0018677111
-
Integral membrane protein interaction with Triton cytoskeletons of erythrocytes
-
Sheetz, M. P. Integral membrane protein interaction with Triton cytoskeletons of erythrocytes Biochim. Biophys. Acta 1979, 557 (1) 122-34
-
(1979)
Biochim. Biophys. Acta
, vol.557
, Issue.1
, pp. 122-134
-
-
Sheetz, M.P.1
-
33
-
-
67349266694
-
Universal sample preparation method for proteome analysis
-
Wisniewski, J. R.; Zougman, A.; Nagaraj, N.; Mann, M. Universal sample preparation method for proteome analysis Nat. Methods 2009, 6 (5) 359-62
-
(2009)
Nat. Methods
, vol.6
, Issue.5
, pp. 359-362
-
-
Wisniewski, J.R.1
Zougman, A.2
Nagaraj, N.3
Mann, M.4
-
34
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J.; Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification Nat. Biotechnol. 2008, 26 (12) 1367-72
-
(2008)
Nat. Biotechnol.
, vol.26
, Issue.12
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
35
-
-
79952437118
-
Systematic discovery of ectopic pregnancy serum biomarkers using 3-D protein profiling coupled with label-free quantitation
-
Beer, L. A.; Tang, H. Y.; Sriswasdi, S.; Barnhart, K. T.; Speicher, D. W. Systematic discovery of ectopic pregnancy serum biomarkers using 3-D protein profiling coupled with label-free quantitation J. Proteome Res. 2011, 10 (3) 1126-38
-
(2011)
J. Proteome Res.
, vol.10
, Issue.3
, pp. 1126-1138
-
-
Beer, L.A.1
Tang, H.Y.2
Sriswasdi, S.3
Barnhart, K.T.4
Speicher, D.W.5
-
36
-
-
84880114899
-
Protein isoform-specific validation defines multiple chloride intracellular channel and tropomyosin isoforms as serological biomarkers of ovarian cancer
-
Tang, H. Y.; Beer, L. A.; Tanyi, J. L.; Zhang, R.; Liu, Q.; Speicher, D. W. Protein isoform-specific validation defines multiple chloride intracellular channel and tropomyosin isoforms as serological biomarkers of ovarian cancer J. Proteomics 2013, 89C, 165-178
-
(2013)
J. Proteomics
, vol.89
, pp. 165-178
-
-
Tang, H.Y.1
Beer, L.A.2
Tanyi, J.L.3
Zhang, R.4
Liu, Q.5
Speicher, D.W.6
-
37
-
-
49849105549
-
Label-free detection of differential protein expression by LC/MALDI mass spectrometry
-
Neubert, H.; Bonnert, T. P.; Rumpel, K.; Hunt, B. T.; Henle, E. S.; James, I. T. Label-free detection of differential protein expression by LC/MALDI mass spectrometry J. Proteome Res. 2008, 7 (6) 2270-9
-
(2008)
J. Proteome Res.
, vol.7
, Issue.6
, pp. 2270-2279
-
-
Neubert, H.1
Bonnert, T.P.2
Rumpel, K.3
Hunt, B.T.4
Henle, E.S.5
James, I.T.6
-
38
-
-
58149209843
-
Determination of Monoisotopic Masses and Ion Populations for Large Biomolecules from Resolved Isotopic Distributions
-
Senko, M. W.; Beu, S. C.; Mclafferty, F. W. Determination of Monoisotopic Masses and Ion Populations for Large Biomolecules from Resolved Isotopic Distributions J. Am. Soc. Mass Spectrom. 1995, 6 (4) 229-233
-
(1995)
J. Am. Soc. Mass Spectrom.
, vol.6
, Issue.4
, pp. 229-233
-
-
Senko, M.W.1
Beu, S.C.2
McLafferty, F.W.3
-
39
-
-
84866118432
-
False discovery rate estimation for cross-linked peptides identified by mass spectrometry
-
Walzthoeni, T.; Claassen, M.; Leitner, A.; Herzog, F.; Bohn, S.; Forster, F.; Beck, M.; Aebersold, R. False discovery rate estimation for cross-linked peptides identified by mass spectrometry Nat. Methods 2012, 9 (9) 901-3
-
(2012)
Nat. Methods
, vol.9
, Issue.9
, pp. 901-903
-
-
Walzthoeni, T.1
Claassen, M.2
Leitner, A.3
Herzog, F.4
Bohn, S.5
Forster, F.6
Beck, M.7
Aebersold, R.8
-
40
-
-
84855935658
-
Chemical cross-linking and H/D exchange for fast refinement of protein crystal structure
-
Rozbesky, D.; Man, P.; Kavan, D.; Chmelik, J.; Cerny, J.; Bezouska, K.; Novak, P. Chemical cross-linking and H/D exchange for fast refinement of protein crystal structure Anal. Chem. 2012, 84 (2) 867-70
-
(2012)
Anal. Chem.
, vol.84
, Issue.2
, pp. 867-870
-
-
Rozbesky, D.1
Man, P.2
Kavan, D.3
Chmelik, J.4
Cerny, J.5
Bezouska, K.6
Novak, P.7
-
41
-
-
84856158133
-
StavroX - A software for analyzing crosslinked products in protein interaction studies
-
Gotze, M.; Pettelkau, J.; Schaks, S.; Bosse, K.; Ihling, C. H.; Krauth, F.; Fritzsche, R.; Kuhn, U.; Sinz, A. StavroX - a software for analyzing crosslinked products in protein interaction studies J. Am. Soc. Mass Spectrom. 2012, 23 (1) 76-87
-
(2012)
J. Am. Soc. Mass Spectrom.
, vol.23
, Issue.1
, pp. 76-87
-
-
Gotze, M.1
Pettelkau, J.2
Schaks, S.3
Bosse, K.4
Ihling, C.H.5
Krauth, F.6
Fritzsche, R.7
Kuhn, U.8
Sinz, A.9
-
42
-
-
77952051957
-
Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs
-
McIlwain, S.; Draghicescu, P.; Singh, P.; Goodlett, D. R.; Noble, W. S. Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs J. Proteome Res. 2010, 9 (5) 2488-95
-
(2010)
J. Proteome Res.
, vol.9
, Issue.5
, pp. 2488-2495
-
-
McIlwain, S.1
Draghicescu, P.2
Singh, P.3
Goodlett, D.R.4
Noble, W.S.5
-
43
-
-
46249114017
-
Rapid and accurate peptide identification from tandem mass spectra
-
Park, C. Y.; Klammer, A. A.; Kall, L.; MacCoss, M. J.; Noble, W. S. Rapid and accurate peptide identification from tandem mass spectra J. Proteome Res. 2008, 7 (7) 3022-7
-
(2008)
J. Proteome Res.
, vol.7
, Issue.7
, pp. 3022-3027
-
-
Park, C.Y.1
Klammer, A.A.2
Kall, L.3
MacCoss, M.J.4
Noble, W.S.5
-
44
-
-
84866117936
-
Identification of cross-linked peptides from complex samples
-
Yang, B.; Wu, Y. J.; Zhu, M.; Fan, S. B.; Lin, J.; Zhang, K.; Li, S.; Chi, H.; Li, Y. X.; Chen, H. F.; Luo, S. K.; Ding, Y. H.; Wang, L. H.; Hao, Z.; Xiu, L. Y.; Chen, S.; Ye, K.; He, S. M.; Dong, M. Q. Identification of cross-linked peptides from complex samples Nat. Methods 2012, 9 (9) 904-6
-
(2012)
Nat. Methods
, vol.9
, Issue.9
, pp. 904-906
-
-
Yang, B.1
Wu, Y.J.2
Zhu, M.3
Fan, S.B.4
Lin, J.5
Zhang, K.6
Li, S.7
Chi, H.8
Li, Y.X.9
Chen, H.F.10
Luo, S.K.11
Ding, Y.H.12
Wang, L.H.13
Hao, Z.14
Xiu, L.Y.15
Chen, S.16
Ye, K.17
He, S.M.18
Dong, M.Q.19
-
45
-
-
63049105321
-
MassMatrix: A database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data
-
Xu, H.; Freitas, M. A. MassMatrix: a database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data Proteomics 2009, 9 (6) 1548-55
-
(2009)
Proteomics
, vol.9
, Issue.6
, pp. 1548-1555
-
-
Xu, H.1
Freitas, M.A.2
-
46
-
-
38649131282
-
Identification and characterization of disulfide bonds in proteins and peptides from tandem MS data by use of the MassMatrix MS/MS search engine
-
Xu, H.; Zhang, L.; Freitas, M. A. Identification and characterization of disulfide bonds in proteins and peptides from tandem MS data by use of the MassMatrix MS/MS search engine J. Proteome Res. 2008, 7 (1) 138-44
-
(2008)
J. Proteome Res.
, vol.7
, Issue.1
, pp. 138-144
-
-
Xu, H.1
Zhang, L.2
Freitas, M.A.3
-
47
-
-
54949129419
-
ProteoWizard: Open source software for rapid proteomics tools development
-
Kessner, D.; Chambers, M.; Burke, R.; Agus, D.; Mallick, P. ProteoWizard: open source software for rapid proteomics tools development Bioinformatics 2008, 24 (21) 2534-6
-
(2008)
Bioinformatics
, vol.24
, Issue.21
, pp. 2534-2536
-
-
Kessner, D.1
Chambers, M.2
Burke, R.3
Agus, D.4
Mallick, P.5
-
48
-
-
41449110185
-
Identification of cross-linked peptides from large sequence databases
-
Rinner, O.; Seebacher, J.; Walzthoeni, T.; Mueller, L. N.; Beck, M.; Schmidt, A.; Mueller, M.; Aebersold, R. Identification of cross-linked peptides from large sequence databases Nat. Methods 2008, 5 (4) 315-8
-
(2008)
Nat. Methods
, vol.5
, Issue.4
, pp. 315-318
-
-
Rinner, O.1
Seebacher, J.2
Walzthoeni, T.3
Mueller, L.N.4
Beck, M.5
Schmidt, A.6
Mueller, M.7
Aebersold, R.8
-
49
-
-
0003663926
-
-
2 nd ed. Chapman and Hall: New York, p xix
-
McCullagh, P.; Nelder, J. A., Generalized Linear Models, 2 nd ed.; Chapman and Hall: New York, 1989; p xix, 511 p.
-
(1989)
Generalized Linear Models
, pp. 511
-
-
McCullagh, P.1
Nelder, J.A.2
-
50
-
-
38349178200
-
A structural model of the erythrocyte spectrin heterodimer initiation site determined using homology modeling and chemical cross-linking
-
Li, D.; Tang, H. Y.; Speicher, D. W. A structural model of the erythrocyte spectrin heterodimer initiation site determined using homology modeling and chemical cross-linking J. Biol. Chem. 2008, 283 (3) 1553-62
-
(2008)
J. Biol. Chem.
, vol.283
, Issue.3
, pp. 1553-1562
-
-
Li, D.1
Tang, H.Y.2
Speicher, D.W.3
|