-
1
-
-
23944480893
-
Utilizing human blood plasma for proteomic biomarker discovery
-
Jacobs, J. M., Adkins, J. N., Qian, W. J., et al. (2005) Utilizing human blood plasma for proteomic biomarker discovery, J Proteome Res 4, 1073–1085.
-
(2005)
J Proteome Res
, vol.4
, pp. 1073-1085
-
-
Jacobs, J.M.1
Adkins, J.N.2
Qian, W.J.3
-
2
-
-
0001644020
-
The human plasma proteome: History, character, and diagnostic prospects
-
Anderson, N. L., and Anderson, N. G. (2002) The human plasma proteome: history, character, and diagnostic prospects, Mol Cell Proteomics 1, 845–867.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 845-867
-
-
Anderson, N.L.1
Anderson, N.G.2
-
3
-
-
41649100689
-
Mining the plasma proteome for cancer biomarkers
-
Hanash, S. M., Pitteri, S. J., and Faca, V. M. (2008) Mining the plasma proteome for cancer biomarkers, Nature 452, 571–579.
-
(2008)
Nature
, vol.452
, pp. 571-579
-
-
Hanash, S.M.1
Pitteri, S.J.2
Faca, V.M.3
-
4
-
-
33845572150
-
Human body fluid proteome analysis
-
Hu, S., Loo, J. A., and Wong, D. T. (2006) Human body fluid proteome analysis, Proteomics 6, 6326–6353.
-
(2006)
Proteomics
, vol.6
, pp. 6326-6353
-
-
Hu, S.1
Loo, J.A.2
Wong, D.T.3
-
5
-
-
34047113404
-
Higher dimensional (Hi-D) separation strategies dramatically improve the potential for cancer biomarker detection in serum and plasma
-
Hoffman, S. A., Joo, W. A., Echan, L. A., and Speicher, D. W. (2007) Higher dimensional (Hi-D) separation strategies dramatically improve the potential for cancer biomarker detection in serum and plasma, J Chromatogr B Analyt Technol Biomed Life Sci 849, 43–52.
-
(2007)
J Chromatogr B Analyt Technol Biomed Life Sci
, vol.849
, pp. 43-52
-
-
Hoffman, S.A.1
Joo, W.A.2
Echan, L.A.3
Speicher, D.W.4
-
6
-
-
23944492134
-
Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database
-
Omenn, G. S., States, D. J., Adamski, M., et al. (2005) Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database, Proteomics 5, 3226–3245.
-
(2005)
Proteomics
, vol.5
, pp. 3226-3245
-
-
Omenn, G.S.1
States, D.J.2
Adamski, M.3
-
7
-
-
33644864034
-
Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study
-
States, D. J., Omenn, G. S., Blackwell, T. W., et al. (2006) Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study, Nat Biotechnol 24, 333–338.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 333-338
-
-
States, D.J.1
Omenn, G.S.2
Blackwell, T.W.3
-
8
-
-
0346364695
-
Characterization of the low molecular weight human serum proteome
-
Tirumalai, R. S., Chan, K. C., Prieto, D., et al. (2003) Characterization of the low molecular weight human serum proteome, Mol Cell Proteomics 2, 1096–1103.
-
(2003)
Mol Cell Proteomics
, vol.2
, pp. 1096-1103
-
-
Tirumalai, R.S.1
Chan, K.C.2
Prieto, D.3
-
9
-
-
40549107755
-
Comparative LC-MS: A landscape of peaks and valleys
-
America, A. H., and Cordewener, J. H. (2008) Comparative LC-MS: a landscape of peaks and valleys, Proteomics 8, 731–749.
-
(2008)
Proteomics
, vol.8
, pp. 731-749
-
-
America, A.H.1
Cordewener, J.H.2
-
10
-
-
34748916981
-
Quantitative mass spectrometry in proteomics: A critical review
-
Bantscheff, M., Schirle, M., Sweetman, G., Rick, J., and Kuster, B. (2007) Quantitative mass spectrometry in proteomics: a critical review, Anal Bioanal Chem 389, 1017–1031.
-
(2007)
Anal Bioanal Chem
, vol.389
, pp. 1017-1031
-
-
Bantscheff, M.1
Schirle, M.2
Sweetman, G.3
Rick, J.4
Kuster, B.5
-
11
-
-
34948876373
-
Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes
-
Faca, V., Pitteri, S. J., Newcomb, L., et al. (2007) Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes, J Proteome Res 6, 3558–3565.
-
(2007)
J Proteome Res
, vol.6
, pp. 3558-3565
-
-
Faca, V.1
Pitteri, S.J.2
Newcomb, L.3
-
12
-
-
32044453084
-
Biomarker discovery from the plasma proteome using multidimensional fractionation proteomics
-
Lee, H. J., Lee, E. Y., Kwon, M. S., and Paik, Y. K. (2006) Biomarker discovery from the plasma proteome using multidimensional fractionation proteomics, Curr Opin Chem Biol 10, 42–49.
-
(2006)
Curr Opin Chem Biol
, vol.10
, pp. 42-49
-
-
Lee, H.J.1
Lee, E.Y.2
Kwon, M.S.3
Paik, Y.K.4
-
13
-
-
51149117905
-
Evaluation of three principally different intact protein prefractionation methods for plasma biomarker discovery
-
Pernemalm, M., Orre, L. M., Lengqvist, J., et al. (2008) Evaluation of three principally different intact protein prefractionation methods for plasma biomarker discovery, J Proteome Res 7, 2712–2722.
-
(2008)
J Proteome Res
, vol.7
, pp. 2712-2722
-
-
Pernemalm, M.1
Orre, L.M.2
Lengqvist, J.3
-
14
-
-
23944524368
-
Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma
-
Echan, L. A., Tang, H. Y., Ali-Khan, N., et al. (2005) Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma, Proteomics 5, 3292–3303.
-
(2005)
Proteomics
, vol.5
, pp. 3292-3303
-
-
Echan, L.A.1
Tang, H.Y.2
Ali-Khan, N.3
-
15
-
-
0037387175
-
Multi-component immunoaffinity subtraction chromatography: An innovative step towards a comprehensive survey of the human plasma proteome
-
Pieper, R., Su, Q., Gatlin, C. L., et al. (2003) Multi-component immunoaffinity subtraction chromatography: an innovative step towards a comprehensive survey of the human plasma proteome, Proteomics 3, 422–432.
-
(2003)
Proteomics
, vol.3
, pp. 422-432
-
-
Pieper, R.1
Su, Q.2
Gatlin, C.L.3
-
16
-
-
55049134160
-
Enhanced detection of low abundance human plasma proteins using a tandem IgY12-SuperMix immunoaffinity separation strategy
-
Qian, W. J., Kaleta, D. T., Petritis, B. O., et al. (2008) Enhanced detection of low abundance human plasma proteins using a tandem IgY12-SuperMix immunoaffinity separation strategy, Mol Cell Proteomics 7, 1963–1973.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 1963-1973
-
-
Qian, W.J.1
Kaleta, D.T.2
Petritis, B.O.3
-
17
-
-
4444335470
-
The ABC’s (and XYZ’s) of peptide sequencing
-
Steen, H., and Mann, M. (2004) The ABC’s (and XYZ’s) of peptide sequencing, Nat Rev Mol Cell Biol 5, 699–711.
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, pp. 699-711
-
-
Steen, H.1
Mann, M.2
-
18
-
-
1842499791
-
Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry
-
Schirle, M., Heurtier, M. A., and Kuster, B. (2003) Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry, Mol Cell Proteomics 2, 1297–1305.
-
(2003)
Mol Cell Proteomics
, vol.2
, pp. 1297-1305
-
-
Schirle, M.1
Heurtier, M.A.2
Kuster, B.3
-
19
-
-
85139040239
-
-
Old, W. M., Meyer-Arendt, K., Aveline-Wolf., et al. (2005) Comparison of label-free methods for quantifying human proteins by shotgun proteomics, Mol Cell Proteomics 4, 1487–1502.
-
Old, W. M., Meyer-Arendt, K., Aveline-Wolf., et al. (2005) Comparison of label-free methods for quantifying human proteins by shotgun proteomics, Mol Cell Proteomics 4, 1487–1502.
-
-
-
-
20
-
-
57449099068
-
Precision proteomics: The case for high resolution and high mass accuracy
-
Mann, M., and Kelleher, N. L. (2008) Precision proteomics: the case for high resolution and high mass accuracy, Proc Natl Acad Sci U S A 105, 18132–18138.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 18132-18138
-
-
Mann, M.1
Kelleher, N.L.2
-
21
-
-
84858234021
-
Immunoaffinity depletion of high abundance plasma and serum proteins
-
Walker, J. M., Ed.) 2nd ed., Humana Press, New York
-
Echan, L. A., and Speicher, D. W. (2009) Immunoaffinity depletion of high abundance plasma and serum proteins, In The Protein Protocols Handbook (Walker, J. M., Ed.) 2nd ed., pp 139-153, Humana Press, New York.
-
(2009)
The Protein Protocols Handbook
, pp. 139-153
-
-
Echan, L.A.1
Speicher, D.W.2
-
22
-
-
23944520883
-
HUPO Plasma Proteome Project specimen collection and handling: Towards the standardization of parameters for plasma proteome samples
-
Rai, A. J., Gelfand, C. A., Haywood, B. C., et al. (2005) HUPO Plasma Proteome Project specimen collection and handling: towards the standardization of parameters for plasma proteome samples, Proteomics 5, 3262–3277.
-
(2005)
Proteomics
, vol.5
, pp. 3262-3277
-
-
Rai, A.J.1
Gelfand, C.A.2
Haywood, B.C.3
-
23
-
-
44949145171
-
Pooling serum samples may lead to loss of potential biomarkers in SELDI-ToF MS proteomic profiling
-
Sadiq, S. T., and Agranoff, D. (2008) Pooling serum samples may lead to loss of potential biomarkers in SELDI-ToF MS proteomic profiling, Proteome Sci 6, 16.
-
(2008)
Proteome Sci
, vol.6
, pp. 16
-
-
Sadiq, S.T.1
Agranoff, D.2
-
24
-
-
60349112456
-
Investigating sample pooling strategies for DIGE experiments to address biological variability
-
Karp, N. A., and Lilley, K. S. (2009) Investigating sample pooling strategies for DIGE experiments to address biological variability, Proteomics 9, 388–397.
-
(2009)
Proteomics
, vol.9
, pp. 388-397
-
-
Karp, N.A.1
Lilley, K.S.2
-
25
-
-
0347621463
-
Statistical implications of pooling RNA samples for microarray experiments
-
Peng, X., Wood, C. L., Blalock, E. M., Chen, K. C., Landfield, P. W., and Stromberg, A. J. (2003) Statistical implications of pooling RNA samples for microarray experiments, BMC Bioinformatics 4, 26.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 26
-
-
Peng, X.1
Wood, C.L.2
Blalock, E.M.3
Chen, K.C.4
Landfield, P.W.5
Stromberg, A.J.6
-
26
-
-
49849105549
-
Label-free detection of differential protein expression by LC/MALDI mass spectrometry
-
Neubert, H., Bonnert, T. P., Rumpel, K., et al. (2008) Label-free detection of differential protein expression by LC/MALDI mass spectrometry, J Proteome Res 7, 2270–2279.
-
(2008)
J Proteome Res
, vol.7
, pp. 2270-2279
-
-
Neubert, H.1
Bonnert, T.P.2
Rumpel, K.3
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