-
1
-
-
37749025169
-
Primer: sequencing: the next generation
-
Rusk N., Kiermer V. Primer: sequencing: the next generation. Nat Methods 2008, 5:15.
-
(2008)
Nat Methods
, vol.5
, pp. 15
-
-
Rusk, N.1
Kiermer, V.2
-
2
-
-
84874865318
-
Next generation sequencing in cancer research and clinical application
-
Shyr D., Liu Q. Next generation sequencing in cancer research and clinical application. Biol Proced Online 2012, 15:4.
-
(2012)
Biol Proced Online
, vol.15
, pp. 4
-
-
Shyr, D.1
Liu, Q.2
-
3
-
-
84862205478
-
Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes
-
D'Antonio M., Pendino V., Sinha S., et al. Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes. Nucleic Acids Res 2012, 40:D978-D983.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
D'Antonio, M.1
Pendino, V.2
Sinha, S.3
-
4
-
-
84859742518
-
Molecular genetics of acute myeloid leukemia: clinical implications and opportunities for integrating genomics into clinical practice
-
Abdel-Wahab O. Molecular genetics of acute myeloid leukemia: clinical implications and opportunities for integrating genomics into clinical practice. Hematology 2012, 17:S39-S42.
-
(2012)
Hematology
, vol.17
-
-
Abdel-Wahab, O.1
-
5
-
-
0035810147
-
Efficacy and safety of a specific inhibitor of the BCR-ABL tyrosine kinase in chronic myeloid leukemia
-
Druker B.J., Talpaz M., Resta D.J., et al. Efficacy and safety of a specific inhibitor of the BCR-ABL tyrosine kinase in chronic myeloid leukemia. NEngl J Med 2001, 344:1031-1037.
-
(2001)
NEngl J Med
, vol.344
, pp. 1031-1037
-
-
Druker, B.J.1
Talpaz, M.2
Resta, D.J.3
-
6
-
-
75249087060
-
Gefitinib versus cisplatin plus docetaxel in patients with non-small-cell lung cancer harbouring mutations of the epidermal growth factor receptor (WJTOG3405): an open label, randomised Phase 3 trial
-
Mitsudomi T., Morita S., Yatabe Y., et al. Gefitinib versus cisplatin plus docetaxel in patients with non-small-cell lung cancer harbouring mutations of the epidermal growth factor receptor (WJTOG3405): an open label, randomised Phase 3 trial. Lancet Oncol 2009, 11:121-128.
-
(2009)
Lancet Oncol
, vol.11
, pp. 121-128
-
-
Mitsudomi, T.1
Morita, S.2
Yatabe, Y.3
-
7
-
-
69949162760
-
Gefitinib or carboplatin-paclitaxel in pulmonary adenocarcinama
-
Mok T.S., Wu Y.L., Thongprasert S., et al. Gefitinib or carboplatin-paclitaxel in pulmonary adenocarcinama. NEngl J Med 2009, 361:947-957.
-
(2009)
NEngl J Med
, vol.361
, pp. 947-957
-
-
Mok, T.S.1
Wu, Y.L.2
Thongprasert, S.3
-
8
-
-
69949186250
-
Screening for epidermal growth factor receptor mutations in lung cancer
-
Rosell R., Moran T., Queralt C., et al. Screening for epidermal growth factor receptor mutations in lung cancer. NEngl J Med 2009, 361:958-967.
-
(2009)
NEngl J Med
, vol.361
, pp. 958-967
-
-
Rosell, R.1
Moran, T.2
Queralt, C.3
-
9
-
-
84879879406
-
Treatment and detection of ALK-rearranged NSCLC
-
Peters S., Taron M., Bubendorf L., et al. Treatment and detection of ALK-rearranged NSCLC. Lung Cancer 2013, 81:145-154.
-
(2013)
Lung Cancer
, vol.81
, pp. 145-154
-
-
Peters, S.1
Taron, M.2
Bubendorf, L.3
-
10
-
-
79961004638
-
The power of NGS technologies to delineate the genome organization in cancer: from mutations to structural variations and epigenetic alterations
-
Schweiger M.R., Kerick M., Timmermann B., et al. The power of NGS technologies to delineate the genome organization in cancer: from mutations to structural variations and epigenetic alterations. Cancer Metastasis Rev 2011, 30:199-210.
-
(2011)
Cancer Metastasis Rev
, vol.30
, pp. 199-210
-
-
Schweiger, M.R.1
Kerick, M.2
Timmermann, B.3
-
12
-
-
39649117755
-
The impact of next-generation sequencing technology on genetics
-
Mardis E.R. The impact of next-generation sequencing technology on genetics. Trends Genet 2008, 24:133-141.
-
(2008)
Trends Genet
, vol.24
, pp. 133-141
-
-
Mardis, E.R.1
-
13
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure J., Ji H. Next-generation DNA sequencing. Nat Biotechnol 2008, 26:1135-1145.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
14
-
-
72849144434
-
Sequencing technologies - the next generation
-
Metzker M.L. Sequencing technologies - the next generation. Nat Rev Genet 2010, 11:31-46.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
15
-
-
84864920004
-
Comparison of next-generation sequencing systems
-
Liu L., Li Y., Li S., et al. Comparison of next-generation sequencing systems. JBiomed Biotechnol 2012, 2012:251364.
-
(2012)
JBiomed Biotechnol
, vol.2012
, pp. 251364
-
-
Liu, L.1
Li, Y.2
Li, S.3
-
16
-
-
79953167500
-
The next-generation sequencing technology and application
-
Zhou X., Ren L., Meng Q., et al. The next-generation sequencing technology and application. Protein Cell 2010, 1:520-536.
-
(2010)
Protein Cell
, vol.1
, pp. 520-536
-
-
Zhou, X.1
Ren, L.2
Meng, Q.3
-
17
-
-
64149123778
-
Next-generation sequencing: from basic research to diagnostics
-
Voelkerding K.V., Dames S.A., Durtschi J.D. Next-generation sequencing: from basic research to diagnostics. Clin Chem 2009, 55:641-658.
-
(2009)
Clin Chem
, vol.55
, pp. 641-658
-
-
Voelkerding, K.V.1
Dames, S.A.2
Durtschi, J.D.3
-
18
-
-
53649100100
-
The development and impact of 454 sequencing
-
Rothberg J.M., Leamon J.H. The development and impact of 454 sequencing. Nat Biotechnol 2008, 26:1117-1124.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1117-1124
-
-
Rothberg, J.M.1
Leamon, J.H.2
-
19
-
-
24044455869
-
Genome sequencing in microfabricated high density picolitre reactors
-
Margulies M., Egholm M., Altman W.E., et al. Genome sequencing in microfabricated high density picolitre reactors. Nature 2005, 437:376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
-
20
-
-
79960597679
-
An integrated semiconductor device enabling non-optical genome sequencing
-
Rothberg J.M., Hinz W., Rearick T.M., et al. An integrated semiconductor device enabling non-optical genome sequencing. Nature 2011, 475:348-352.
-
(2011)
Nature
, vol.475
, pp. 348-352
-
-
Rothberg, J.M.1
Hinz, W.2
Rearick, T.M.3
-
21
-
-
70449339945
-
Microdroplet-based PCR enrichment for large-scale targeted sequencing
-
Tewhey R., Warner J.B., Nakano M., et al. Microdroplet-based PCR enrichment for large-scale targeted sequencing. Nat Biotechnol 2009, 11:1025-1031.
-
(2009)
Nat Biotechnol
, vol.11
, pp. 1025-1031
-
-
Tewhey, R.1
Warner, J.B.2
Nakano, M.3
-
23
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B., Salzberg S.L. Fast gapped-read alignment with Bowtie 2. Nat Methods 2012, 9:357-359.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
24
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H., Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25:1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
25
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li H., Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 2010, 26:589-595.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
26
-
-
67650711615
-
SOAP2: an improved ultrafast tool for short read alignment
-
Li R., Yu C., Li Y., et al. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 2009, 25:1966-1967.
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
-
27
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li H., Ruan J., Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 2008, 18:1851-1858.
-
(2008)
Genome Res
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
28
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C., Pachter L., Salzberg S.L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25:1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
29
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H., Handsaker B., Wysoker A., et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009, 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
30
-
-
77954202204
-
VARiD: a variation detection framework for color-space and letter-space platforms
-
Dalca A.V., Rumble S.M., Levy S., et al. VARiD: a variation detection framework for color-space and letter-space platforms. Bioinformatics 2010, 26:i343-i349.
-
(2010)
Bioinformatics
, vol.26
-
-
Dalca, A.V.1
Rumble, S.M.2
Levy, S.3
-
31
-
-
84863229597
-
VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing
-
Koboldt D.C., Zhang Q., Larson D.E., et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 2012, 22:568-576.
-
(2012)
Genome Res
, vol.22
, pp. 568-576
-
-
Koboldt, D.C.1
Zhang, Q.2
Larson, D.E.3
-
32
-
-
77955443472
-
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
-
Au K.F., Jiang H., Lin L., et al. Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Res 2010, 38:4570-4578.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 4570-4578
-
-
Au, K.F.1
Jiang, H.2
Lin, L.3
-
33
-
-
84873606413
-
SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data
-
Jia W., Qiu K., He M., et al. SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data. Genome Biol 2013, 14:R12.
-
(2013)
Genome Biol
, vol.14
-
-
Jia, W.1
Qiu, K.2
He, M.3
-
34
-
-
84870542276
-
FusionAnalyser: a new graphical, event-driven tool for fusion rearrangements discovery
-
Piazza R., Pirola A., Spinelli R., et al. FusionAnalyser: a new graphical, event-driven tool for fusion rearrangements discovery. Nucleic Acids Res 2012, 40:e123.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Piazza, R.1
Pirola, A.2
Spinelli, R.3
-
35
-
-
77955433415
-
Savant: genome browser for high-throughput sequencing data
-
Fiume M., Williams V., Brook A., et al. Savant: genome browser for high-throughput sequencing data. Bioinformatics 2010, 26:1938-1944.
-
(2010)
Bioinformatics
, vol.26
, pp. 1938-1944
-
-
Fiume, M.1
Williams, V.2
Brook, A.3
-
36
-
-
77951640946
-
Amethod and server for predicting damaging missense mutations
-
Adzhubei I.A., Schmidt S., Peshkin L., et al. Amethod and server for predicting damaging missense mutations. Nat Methods 2010, 7:248-249.
-
(2010)
Nat Methods
, vol.7
, pp. 248-249
-
-
Adzhubei, I.A.1
Schmidt, S.2
Peshkin, L.3
-
37
-
-
68149165614
-
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
-
Kumar P., Henikoff S., Ng P.C. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 2009, 4:1073-1081.
-
(2009)
Nat Protoc
, vol.4
, pp. 1073-1081
-
-
Kumar, P.1
Henikoff, S.2
Ng, P.C.3
-
38
-
-
79960411405
-
CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer
-
Wong W.C., Kim D., Carter H., et al. CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer. Bioinformatics 2011, 27:2147-2148.
-
(2011)
Bioinformatics
, vol.27
, pp. 2147-2148
-
-
Wong, W.C.1
Kim, D.2
Carter, H.3
-
39
-
-
77956534324
-
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
-
Wang K., Li M., Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 2010, 38:e164.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
-
40
-
-
33846062023
-
Database resources of the National Center for Biotechnology Information
-
Wheeler D.L., Barrett T., Benson D.A., et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2007, 35:D5-D12.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
-
41
-
-
43349086908
-
The Human Gene Mutation Database (HGMD) and its exploitation in the study of mutational mechanisms
-
Chapter 1:Unit 1.13
-
Cooper D.N., Stenson P.D., Chuzhanova N.A. The Human Gene Mutation Database (HGMD) and its exploitation in the study of mutational mechanisms. Curr Protoc Bioinformatics 2006, Chapter 1:Unit 1.13.
-
(2006)
Curr Protoc Bioinformatics
-
-
Cooper, D.N.1
Stenson, P.D.2
Chuzhanova, N.A.3
-
42
-
-
84883100680
-
The next controversy in genetic testing: clinical data as trade secrets?
-
Cook-Deegan R., Conley J.M., Evans J.P., et al. The next controversy in genetic testing: clinical data as trade secrets?. Eur J Hum Genet 2013, 21:585-588.
-
(2013)
Eur J Hum Genet
, vol.21
, pp. 585-588
-
-
Cook-Deegan, R.1
Conley, J.M.2
Evans, J.P.3
-
43
-
-
84864432325
-
Genomic medicine: evolving science, evolving ethics
-
Soden S.E., Farrow E.G., Saunders C.J., et al. Genomic medicine: evolving science, evolving ethics. Per Med 2012, 9:523-528.
-
(2012)
Per Med
, vol.9
, pp. 523-528
-
-
Soden, S.E.1
Farrow, E.G.2
Saunders, C.J.3
-
44
-
-
84875932002
-
New approaches to molecular diagnosis
-
Korf B.R., Rehm H.L. New approaches to molecular diagnosis. JAMA 2013, 309:1511-1521.
-
(2013)
JAMA
, vol.309
, pp. 1511-1521
-
-
Korf, B.R.1
Rehm, H.L.2
-
45
-
-
84868368232
-
Patent controversies and court cases: cancer diagnosis, therapy and prevention
-
Fialho A.M., Chakrabarty A.M. Patent controversies and court cases: cancer diagnosis, therapy and prevention. Cancer Biol Ther 2012, 13:1229-1234.
-
(2012)
Cancer Biol Ther
, vol.13
, pp. 1229-1234
-
-
Fialho, A.M.1
Chakrabarty, A.M.2
|