-
1
-
-
34548400394
-
A la carte proteomics with an emphasis on gel-free techniques
-
Gevaert, K.; Van Damme, P.; Ghesquiere, B.; Impens, F.; Martens, L.; Helsens, K.; Vandekerckhove, J. A la carte proteomics with an emphasis on gel-free techniques Proteomics 2007, 7 (16) 2698-2718
-
(2007)
Proteomics
, vol.7
, Issue.16
, pp. 2698-2718
-
-
Gevaert, K.1
Van Damme, P.2
Ghesquiere, B.3
Impens, F.4
Martens, L.5
Helsens, K.6
Vandekerckhove, J.7
-
2
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R.; Mann, M. Mass spectrometry-based proteomics Nature 2003, 422 (6928) 198-207
-
(2003)
Nature
, vol.422
, Issue.6928
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
3
-
-
33645708138
-
Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: Toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides
-
Nesvizhskii, A. I.; Roos, F. F.; Grossmann, J.; Vogelzang, M.; Eddes, J. S.; Gruissem, W.; Baginsky, S.; Aebersold, R. Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: Toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides Mol. Cell. Proteomics 2006, 5 (4) 652-670
-
(2006)
Mol. Cell. Proteomics
, vol.5
, Issue.4
, pp. 652-670
-
-
Nesvizhskii, A.I.1
Roos, F.F.2
Grossmann, J.3
Vogelzang, M.4
Eddes, J.S.5
Gruissem, W.6
Baginsky, S.7
Aebersold, R.8
-
4
-
-
33645653958
-
Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering
-
Flikka, K.; Martens, L.; Vandekerckhove, J.; Gevaert, K.; Eidhammer, I. Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering Proteomics 2006, 6 (7) 2086-2094
-
(2006)
Proteomics
, vol.6
, Issue.7
, pp. 2086-2094
-
-
Flikka, K.1
Martens, L.2
Vandekerckhove, J.3
Gevaert, K.4
Eidhammer, I.5
-
5
-
-
84874875475
-
Searching for a needle in a stack of needles: Challenges in metaproteomics data analysis
-
Muth, T.; Benndorf, D.; Reichl, U.; Rapp, E.; Martens, L. Searching for a needle in a stack of needles: Challenges in metaproteomics data analysis Mol. BioSyst. 2013, 9, 578-585
-
(2013)
Mol. BioSyst.
, vol.9
, pp. 578-585
-
-
Muth, T.1
Benndorf, D.2
Reichl, U.3
Rapp, E.4
Martens, L.5
-
6
-
-
58549101102
-
Discovery and revision of Arabidopsis genes by proteogenomics
-
Castellana, N. E.; Payne, S. H.; Shen, Z.; Stanke, M.; Bafna, V.; Briggs, S. P. Discovery and revision of Arabidopsis genes by proteogenomics Proc. Natl. Acad. Sci. U.S.A. 2008, 105 (52) 21034-21038
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, Issue.52
, pp. 21034-21038
-
-
Castellana, N.E.1
Payne, S.H.2
Shen, Z.3
Stanke, M.4
Bafna, V.5
Briggs, S.P.6
-
7
-
-
16644362015
-
What to do with "one-hit wonders"?
-
Veenstra, T. D.; Conrads, T. P.; Issaq, H. J. What to do with "one-hit wonders"? Electrophoresis 2004, 25 (9) 1278-1279
-
(2004)
Electrophoresis
, vol.25
, Issue.9
, pp. 1278-1279
-
-
Veenstra, T.D.1
Conrads, T.P.2
Issaq, H.J.3
-
8
-
-
80054760698
-
Algorithms for the de novo sequencing of peptides from tandem mass spectra
-
Allmer, J. Algorithms for the de novo sequencing of peptides from tandem mass spectra Expert Rev. Proteomics 2011, 8 (5) 645-657
-
(2011)
Expert Rev. Proteomics
, vol.8
, Issue.5
, pp. 645-657
-
-
Allmer, J.1
-
9
-
-
33751068791
-
Performance evaluation of existing de novo sequencing algorithms
-
Pevtsov, S.; Fedulova, I.; Mirzaei, H.; Buck, C.; Zhang, X. Performance evaluation of existing de novo sequencing algorithms J. Proteome Res. 2006, 5 (11) 3018-3028
-
(2006)
J. Proteome Res.
, vol.5
, Issue.11
, pp. 3018-3028
-
-
Pevtsov, S.1
Fedulova, I.2
Mirzaei, H.3
Buck, C.4
Zhang, X.5
-
10
-
-
0141989734
-
PEAKS: Powerful software for peptide de novo sequencing by tandem mass spectrometry
-
Ma, B.; Zhang, K.; Hendrie, C.; Liang, C.; Li, M.; Doherty-Kirby, A.; Lajoie, G. PEAKS: Powerful software for peptide de novo sequencing by tandem mass spectrometry Rapid Commun. Mass Spectrom. 2003, 17 (20) 2337-2342
-
(2003)
Rapid Commun. Mass Spectrom.
, vol.17
, Issue.20
, pp. 2337-2342
-
-
Ma, B.1
Zhang, K.2
Hendrie, C.3
Liang, C.4
Li, M.5
Doherty-Kirby, A.6
Lajoie, G.7
-
11
-
-
13844319908
-
PepNovo: De novo peptide sequencing via probabilistic network modeling
-
Frank, A.; Pevzner, P. PepNovo: De novo peptide sequencing via probabilistic network modeling Anal. Chem. 2005, 77 (4) 964-973
-
(2005)
Anal. Chem.
, vol.77
, Issue.4
, pp. 964-973
-
-
Frank, A.1
Pevzner, P.2
-
12
-
-
49449097859
-
The PSI-MOD community standard for representation of protein modification data
-
Montecchi-Palazzi, L.; Beavis, R.; Binz, P. A.; Chalkley, R. J.; Cottrell, J.; Creasy, D.; Shofstahl, J.; Seymour, S. L.; Garavelli, J. S. The PSI-MOD community standard for representation of protein modification data Nat. Biotechnol. 2008, 26 (8) 864-866
-
(2008)
Nat. Biotechnol.
, vol.26
, Issue.8
, pp. 864-866
-
-
Montecchi-Palazzi, L.1
Beavis, R.2
Binz, P.A.3
Chalkley, R.J.4
Cottrell, J.5
Creasy, D.6
Shofstahl, J.7
Seymour, S.L.8
Garavelli, J.S.9
-
13
-
-
79951750784
-
SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches
-
Vaudel, M.; Barsnes, H.; Berven, F. S.; Sickmann, A.; Martens, L. SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches Proteomics 2011, 11 (5) 996-999
-
(2011)
Proteomics
, vol.11
, Issue.5
, pp. 996-999
-
-
Vaudel, M.1
Barsnes, H.2
Berven, F.S.3
Sickmann, A.4
Martens, L.5
-
14
-
-
7044246160
-
Open mass spectrometry search algorithm
-
Geer, L. Y.; Markey, S. P.; Kowalak, J. A.; Wagner, L.; Xu, M.; Maynard, D. M.; Yang, X.; Shi, W.; Bryant, S. H. Open mass spectrometry search algorithm J. Proteome Res. 2004, 3 (5) 958-964
-
(2004)
J. Proteome Res.
, vol.3
, Issue.5
, pp. 958-964
-
-
Geer, L.Y.1
Markey, S.P.2
Kowalak, J.A.3
Wagner, L.4
Xu, M.5
Maynard, D.M.6
Yang, X.7
Shi, W.8
Bryant, S.H.9
-
15
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
Craig, R.; Beavis, R. C. TANDEM: Matching proteins with tandem mass spectra Bioinformatics 2004, 20 (9) 1466-1467
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
16
-
-
79952356891
-
Compomics-utilities: An open-source Java library for computational proteomics
-
Barsnes, H.; Vaudel, M.; Colaert, N.; Helsens, K.; Sickmann, A.; Berven, F. S.; Martens, L. compomics-utilities: An open-source Java library for computational proteomics BMC Bioinf. 2011, 12, 70
-
(2011)
BMC Bioinf.
, vol.12
, pp. 70
-
-
Barsnes, H.1
Vaudel, M.2
Colaert, N.3
Helsens, K.4
Sickmann, A.5
Berven, F.S.6
Martens, L.7
-
17
-
-
0037176222
-
Monolithic Capillary Columns for Liquid Chromatography-Electrospray Ionization Mass Spectrometry in Proteomic and Genomic Research
-
Walcher, W.; Oberacher, H.; Troiani, S.; Hölzl, G.; Oefner, P.; Zolla, L.; Huber, C. G. Monolithic Capillary Columns for Liquid Chromatography-Electrospray Ionization Mass Spectrometry in Proteomic and Genomic Research J. Chromatogr., B 2002, 782, 111-125
-
(2002)
J. Chromatogr., B
, vol.782
, pp. 111-125
-
-
Walcher, W.1
Oberacher, H.2
Troiani, S.3
Hölzl, G.4
Oefner, P.5
Zolla, L.6
Huber, C.G.7
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