Changes in the microbial communities during co-composting of digestates

Waste Management

Volumn 34, Issue 3, 2014, Pages 632-641

  Franke Whittle, Ingrid H ^a   Confalonieri, Alberto ^b   Insam, Heribert ^a   Schlegelmilch, Mirko ^c   Körner, Ina ^c  

^a UNIVERSITY OF INNSBRUCK   (Austria)

^b Scuola Agraria del Parco di Monza   (Italy)

^c HAMBURG UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

Anaerobic digestion; COMPOCHIP; Composting; Microarray; Nitrogen compounds

Indexed keywords

ANAEROBIC DIGESTION; COMPOCHIP; COMPOSTING; MICROARRAY; NITROGEN COMPOUNDS;

BACTERIA; BACTERIAL PHYSIOLOGICAL PHENOMENA; BIODIVERSITY; DNA, BACTERIAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REFUSE DISPOSAL; SOIL MICROBIOLOGY; SOLID WASTE; TIME FACTORS;

EID: 84893806823     PISSN: 0956053X     EISSN: 18792456     Source Type: Journal    
DOI: 10.1016/j.wasman.2013.12.009     Document Type: Article

References (62)

1. Alfreider A., Peters S., Tebbe C.C., Rangger A., Insam H. Microbial community dynamics during composting of organic matter as determined by 16S ribosomal DNA analysis. Compost Sci. Util. 2002, 10:303-312.
2. Balsari, P., Gioelli, F., Menardo, S., Paschetta, E. 2010. The (re)use of mechanical separated solid fraction of digested or not digested slurry in anaerobic digestion plants. In: Marques dos Santos Cordovil, C.S.C., Ferreira, L., (Eds.), RAMIRAN 2010 - Treatment and use of organic residues in Agriculture-Challenges and opportunities towards sustainable management, Proceedings of the 14th international Conference, ISA-Press, Lissabon, Portugal, Art. 0256.
3. BioAbfV, 1998: Verordnung über die Verwertung von Bioabfällen auf landwirtschaftlich, forstwirtschaftlich und gärtnerisch genutzten Böden (Bioabfallverordnung) vom 21. September 1998. BGBl. I, pp. 2955.
4. Böhnel H., Briese B.-H., Gessler F. Methods for health risk assessment by Clostridium botulinum in biocompost. Microbiology of Composting 2002, 517-526. Springer-Verlag, Berlin, Germany. H. Insam, N. Riddech, S. Klammer (Eds.).
5. Bougnom B.P., Greber B., Franke-Whittle I.H., Casera C., Insam H. Soil microbial dynamics in organic (biodynamic) and integrated apple orchards. Org. Agric. 2012, 2:1-11.
6. Bustamante M.A., Alburquerque J.A., Restrepo A.P., de la Fuente C., Paredes C., Moral R., Bernal M.P. Co-composting of the solid fraction of anaerobic digestates, to obtain added-value materials for use in agriculture. Biomass Bioenergy 2012, 43:26-35.
7. Bustamante M.A., Restrepo A.P., Alburquerque J.A., Perez-Murcia M.D., Paredes C., Moral R., Bernal M.P. Recycling of anaerobic digestates by composting: effect of the bulking agent used. J. Clean. Prod. 2013, 47:61-69.
8. Cayuela M.L., Mondini C., Insam H., Sinicco T., Franke-Whittle I.H. Plant and animal wastes composting: effects of the N source on process performance. Bioresour. Technol. 2009, 100:3097-3106.
9. Cuhls, C., Mähl, B., Clemens, J., 2008. Emissionen aus der Kompostierung und Vergärung von Bioabfällen im Vergleich. In: Biomasse-Forum 2008; Witzenhausen-Institut für Abfall, Umwelt und Energie GmbH.
10. Danon M., Franke-Whittle I.H., Insam H., Chen Y., Hadar Y. Molecular analysis of bacterial community succession during prolonged compost curing. FEMS Microbiol. Ecol. 2008, 65:133-144.
11. de Bertoldi M., Vallini G., Pera A. The biology of composting - a review. Waste Manage. Res. 1983, 1:157-176.
12. Diaz-Ravina M., Acea M.J., Carballas T. Microbiological characterization of four composted urban refuses. Biol. Wastes 1989, 30:89-100.
13. DIN 38404-5 German Standard Methods for the Examination of Water, Waste Water and Sludge - Physical and Physico-chemical Characteristics (groupC); Part5: Determination of pH Value(C5) 2005, Beuth Verlag, Berlin.
14. DIN 38409-H 28 German Standard Methods for the Examination of Water, Waste Water and Sludge; Parameters Characterizing Effects and Substances (group H); Determination of Bound Nitrogen - Method Using Devard's Alloy and Catalytical Decomposition for Reduction German Version DIN 38409-H 28:1992 1992, Beuth Verlag, Berlin.
15. DIN 38414-4 German Standard Methods for the Examination of Water, Waste Water and Sludge - Sludges and Sediments (groupS); Determination of Leachability by Water (S4) 1984, Beuth Verlag, Berlin.
16. DIN EN 12880 Characterization of Sludges - Determination of Dry Residue and Water Content; German Version EN12880:2000 2001, Beuth Verlag, Berlin.
17. DIN EN ISO 10304-1 Water Quality - Determination of Dissolved Anions by Liquid Chromatography of Ions; Part 1: Determination of Bromide, Chloride, Fluoride, Nitrate, Nitrite, Phosphate and Sulfate (ISO 10304-1:2007); German Version EN ISO 10304-1:2009 2009, Beuth Verlag, Berlin.
18. DIN EN ISO 11732 Water Quality- Determination of Ammonium Nitrogen- Method by Flow Analysis (CFA and FIA) and Spectrometric Detection (ISO11732:2005); German Version ENISO11732:2005 2005, Beuth Verlag, Berlin.
19. Droffner M.L., Brinton W.F., Evans E. Evidence for the prominence of well characterized mesophilic bacteria in thermophilic (50-70°C) composting environments. Biomass Bioenergy 1995, 8:191-195.
20. EPPO, 2013: Data Sheets on Quarantine Pests Xylella fastidiosa Prepared by CABI and EPPO for the EU under Contract 90/399003; (studied in January 2013). http://www.eppo.int/QUARANTINE/bacteria/Xylella_fastidiosa/XYLEFA_ds.pdf.
21. Franke-Whittle I.H., Klammer S.H., Insam H. Design and application of an oligonucleotide microarray for the investigation of compost microbial communities. J. Microbiol. Methods 2005, 62:37-56.
22. Franke-Whittle I.H., Knapp B.A., Fuchs J., Kaufmann R., Insam H. Application of COMPOCHIP microarray to investigate the bacterial communities of different composts. Microb. Ecol. 2009, 57:510-521.
23. Fritz J.I., Franke-Whittle I.H., Haindl S., Insam H., Braun R. Microbiological community analysis of vermicompost tea and its influence on the growth of vegetables and cereals. Can. J. Microbiol. 2012, 58:836-847.
24. Gajalakshmi S., Abbasi S.A. Solid waste management by composting: state of the art. Rev. Environ. Sci. Technol. 2008, 38:311-400.
25. Haas D., Défago G. Biological control of soil-borne pathogens by fluorescent pseudomonads. Nat. Rev. Microbiol. 2005, 3:307-319.
26. He Y., Inamori Y., Mizuochi M., Kong H., Iwami N., Sun T. Nitrous oxide emissions form aerated composting of organic waste. Environ. Sci. Technol. 2001, 11:2347-2351.
27. Hellmann B., Zelles L., Palojärvi A., Bai Q. Emission of climate-relevant trace gases and succession of microbial communities during open windrow composting. Appl. Environ. Microbiol. 1997, 63:1011-1018.
28. Insam H., Franke-Whittle I.H., Goberna M. Microbes in aerobic and anaerobic waste treatment. Microbes at Work From Wastes to Resources 2010, 1-36. Springer-Verlag, Heidelberg, Germany. H. Insam, I.H. Franke-Whittle, M. Goberna (Eds.).
29. Kausar H., Sariah M., Saud H.M., Alam M., Ismail M. Isolation and screening of potential actinobacteria for rapid composting of rice straw. Biodegradation 2011, 22:367-375.
30. Killham K. Heterotrophic nitrification. Nitrification 1986, 117-126. IRL Press, Oxford. J.I. Prosser (Ed.).
31. Knowles R. Denitrification. Microbiol. Rev. 1982, 46:43-70.
32. Körner, I., 2008. Stickstoffhaushalt bei der Kompostierung - Bilanzen, Gehalte, Umsetzungs- und Austragsprozesse. In: Stegmann, R. (Ed.), Hamburger Berichte 33, Verlag Abfall aktuell, Stuttgart, ISBN 978-3-9812867-0-0.
33. Körner, I., Amon, B., Bade, O., Balsari, P., Bioteau, T., Dabert, P., Dach, J., Deipser, A., Kupper, T., Ferreira, L.J.M., Moller, H., Mantovi, P., Schnüre, A., Soldano, M., Ward, A., Fabbri, C., 2010. Anaerobic digestion and digestate utilization in Europe. In: Marques dos Santos Cordovil, C.S.C., Ferreira, L., (Eds.), RAMIRAN 2010 - Treatment and use of organic residues in agriculture-challenges and opportunities towards sustainable management, Proceedings of the 14th International Conference, ISA-Press, Lissabon, Portugal, Art. 0177.
34. Kowalchuk G.A., Naoumenko Z.S., Derikx P.J.L., Felske A., Stephen J.R., Arkhipchenko I.A. Molecular analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in compost and composted materials. Appl. Environ. Microbiol. 1999, 65:396-403.
35. Lalucat J., Bennasar A., Bosch R., Garcia-Valdes E., Palleroni N.J. Biology of Pseudomonas stutzeri. Microbiol. Mol. Biol. Rev. 2006, 70:510-547.
36. Linke, B., Heiermann, M., Loock, R., Kessler, U., 2007. Ergebnisse aus der wisenschaftlichen Begleitung der Pilotanlage Pirow. In ETI Arbeitsgruppensitzung, Friedersdorf. (studied in November 2013). http://www.eti-brandenburg.de/fileadmin/user_upload/Vortraege2007/ETI-AG_Biogas_21.02.07/Prof-Linke-Pirow.pdf.
37. Loveless T.M., Saah J.R., Bishop P.E. Isolation of nitrogen-fixing bacteria containing molybdenum-independent nitrogenases from natural environments. Appl. Environ. Microbiol. 1999, 65:4223-4226.
38. Loy A., Lehner A., Lee N., Adamczyk J., Meier H., Ernst J., Schleifer K.-H., Wagner M. Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl. Environ. Microbiol. 2002, 68:5064-5081.
39. Ludwig L., Strunk O., Westram R., Richter L., Meier H., Yadhukumar A., Buchner A., Lai T., Steppi S., Jobb G., Foerster W., Brettske I., Gerber S., Ginhart A.W., Gross O., Grumann S., Hermann S., Jost R., Koenig A., Liss T., Lussmann R., May M., Nonhoff B., Reichel B., Strehlow R., Stamatakis A., Stuckmann N., Vilbig A., Lenke M., Ludwig T., Bode A., Schleifer K.-H. ARB: a software environment for sequence data. Nucleic Acids Res. 2004, 32:1363-1371.
40. Lv W., Yu Z. Isolation and characterization of two thermophilic cellulolytic strains of Clostridium thermocellum from a compost sample. J. Appl. Microbiol. 2013, 114:1001-1007.
41. Madigan M., Martinko J. Brock Biology of Microorganisms 2005, Prentice Hall. eleventh ed.
42. Mondini C., Insam H. Effect of inoculum standardization on community level physiological profiles of compost samples. Compost Sci. Util. 2005, 13:27-33.
43. Müller G. Bodenbiologie 1965, VEB Verlag G, Fischer, Jena.
44. Partanen P., Hultman J., Paulin L., Auvinen P., Romantschuk M. Bacterial diversity at different stages of the composting process based on analysis of the 16S gene. BMC Microbiol. 2010, 10:94.
45. Probst M., Fritschi A., Wagner A., Insam H. Biowaste: A Lactobacillus habitat and lactic acid fermentation substrate. Bioresour. Technol. 2013, 143:647-652.
46. Rheinheimer G., Hegemann W., Baff J., Sekoulov I. Stickstoffkreislauf im Wasser 1988, R. Oldenbourg Verlag, München.
47. Ryckeboer J., Mergaert J., Vaes K., Klammer S., De Clercq D., Coosemans J., Insam H., Swings J. A survey of bacteria and fungi occurring during composting and self-heating processes. Ann. Microbiol. 2003, 53:349-410.
48. Ryckeboer J., Mergaert J., Coosemans J., Deprins K., Swings J. Microbiological aspects of biowaste during composting in a monitored compost bin. J. Appl. Microbiol. 2003, 94:127-137.
49. Safwat M.S.A. Composting cotton seed wastes. Compost Sci. Land Util. 1980, 21:27-29.
50. Scheffer F., Schachtschabel P. Lehrbuch der Bodenkunde 2002, (15. Aufl.), Spektrum Akademischer Verlag, Heidelberg.
51. Schlee, D., Kleber, H.-P., 1991. Biotechnologie - Wörterbuch der Biologie. Aufl., Bd. 1 und 2, Gustav Fischer Verlag, Jena, 1, ISBN 3 334 00311 6.
52. Shin S.G., Han G., Lim J., Lee C., Hwang S. A comprehensive microbial insight into two-stage anaerobic digestion of food waste-recycling wastewater. Water Res. 2010, 44:4838-4849.
53. Sommer S.G., Dahl P. Nutrient and carbon balance during the composting of deep litter. J. Agric. Eng. Res. 1999, 74:145-153.
54. Sundberg C., Franke-Whittle I.H., Kauppi S., Yu D., Romantschuk M., Insam H., Jönsson H. Characterisation of source-separated household waste intended for composting. Bioresour. Technol. 2011, 102:2859-2867.
55. Sundberg C., Yu D., Franke-Whittle I.H., Kauppi S., Smårs S., Insam H., Romantschuk M., Jönsson H. Effects of pH and microbial composition on odour in food waste composting. Waste Manage. (Oxford) 2013, 33:204-211.
56. Taroncher-Oldenburg G., Griner E.M., Francis C.A., Ward B.B. Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment. Appl. Environ. Microbiol. 2003, 69:1159-1171.
57. ter Braak, C.J.F., Šmilauer, P., 2002. CANOCO Reference Manual and CanoDraw for Windows User's Guide: Software for Canonical Community Ordination (version 4.5). Microcomputer Power, Ithaca.
58. Tiquia S.M. Microbial community dynamics in manure composts based on 16S and 18S rDNA T-RFLP profiles. Environ. Technol. 2005, 26:1101-1113.
59. Tiquia S.M., Tam N.F.Y., Hodgkiss I.J. Microbial activities during composting of spent pig-manure sawdust litter at different moisture contents. Bioresour. Technol. 1996, 55:201-206.
60. Tiquia S.M., Wu L., Chong S.C., Passovets S., Xu D., Xu Y., Zhou J. Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. Biotechniques 2004, 36:664-675.
61. Verstraete W. Heterotrophic nitrification in soils and aqueous media - a review. Biol. Bull. Acad. Sci. USSR 1975, 2:515-530.
62. Yamamoto N., Asano R., Yoshii H., Otawa K., Nakai Y. Archaeal community dynamics and detection of ammonia-oxidizing archaea during composting of cattle manure using culture-independent DNA analysis. Appl. Microbiol. Biotechnol. 2011, 90:1501-1510.