-
1
-
-
14744277777
-
Polyploidy and genome evolution in plants
-
Adams K.L., Wendel J.F. Polyploidy and genome evolution in plants. Curr. Opin. Plant Biol. 2005, 8:135-141.
-
(2005)
Curr. Opin. Plant Biol.
, vol.8
, pp. 135-141
-
-
Adams, K.L.1
Wendel, J.F.2
-
2
-
-
0345071423
-
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
-
Adams K.L., Cronn R., Percifield R., Wendel J.F. Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc. Natl. Acad. Sci. 2003, 100:4649-4654.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 4649-4654
-
-
Adams, K.L.1
Cronn, R.2
Percifield, R.3
Wendel, J.F.4
-
3
-
-
3442876969
-
Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
-
Andersen C.L., Jensen J.L., Orntoft T.F. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004, 64:5245-5250.
-
(2004)
Cancer Res.
, vol.64
, pp. 5245-5250
-
-
Andersen, C.L.1
Jensen, J.L.2
Orntoft, T.F.3
-
4
-
-
34250673544
-
Expression stability of commonly used reference genes in canine articular connective tissues
-
Ayers D., Clements D.N., Salway F., Day P.J. Expression stability of commonly used reference genes in canine articular connective tissues. BMC Vet. Res. 2007, 3:7.
-
(2007)
BMC Vet. Res.
, vol.3
, pp. 7
-
-
Ayers, D.1
Clements, D.N.2
Salway, F.3
Day, P.J.4
-
5
-
-
5444258598
-
Validating internal controls for quantitative plant gene expression studies
-
Brunner A.M., Yakovlev I.A., Strauss S.H. Validating internal controls for quantitative plant gene expression studies. BMC Plant. Biol. 2004, 4:14.
-
(2004)
BMC Plant. Biol.
, vol.4
, pp. 14
-
-
Brunner, A.M.1
Yakovlev, I.A.2
Strauss, S.H.3
-
6
-
-
84861012383
-
Evaluation of candidate reference genes for gene expression normalization in Brassica juncea using real time quantitative RT-PCR
-
Chandna R., Augustine R., Bisht N.C. Evaluation of candidate reference genes for gene expression normalization in Brassica juncea using real time quantitative RT-PCR. PLoS One 2012, 7:e36918.
-
(2012)
PLoS One
, vol.7
-
-
Chandna, R.1
Augustine, R.2
Bisht, N.C.3
-
7
-
-
77955093325
-
A survey of quantitative real-time polymerase chain reaction internal reference genes for expression studies in Brassica napus
-
Chen X., Truksa M., Shah S., Weselake R.J. A survey of quantitative real-time polymerase chain reaction internal reference genes for expression studies in Brassica napus. Anal. Biochem. 2010, 405:138-140.
-
(2010)
Anal. Biochem.
, vol.405
, pp. 138-140
-
-
Chen, X.1
Truksa, M.2
Shah, S.3
Weselake, R.J.4
-
8
-
-
0141853996
-
Asymmetric sequence divergence of duplicate genes
-
Conant G.C., Wagner A. Asymmetric sequence divergence of duplicate genes. Genome Res. 2003, 13:2052-2058.
-
(2003)
Genome Res.
, vol.13
, pp. 2052-2058
-
-
Conant, G.C.1
Wagner, A.2
-
9
-
-
32644481938
-
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
-
Czechowski T., Stitt M., Altmann T., Udvardi M.K., Scheible W.R. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 2005, 139:5-17.
-
(2005)
Plant Physiol.
, vol.139
, pp. 5-17
-
-
Czechowski, T.1
Stitt, M.2
Altmann, T.3
Udvardi, M.K.4
Scheible, W.R.5
-
10
-
-
84864506216
-
Reference genes to quantify gene expression during oogenesis in a teleost fish
-
Deloffre L.A.M., Andrade A., Filipe A.I., Canario A.V.M. Reference genes to quantify gene expression during oogenesis in a teleost fish. Gene 2012, 506:69-75.
-
(2012)
Gene
, vol.506
, pp. 69-75
-
-
Deloffre, L.A.M.1
Andrade, A.2
Filipe, A.I.3
Canario, A.V.M.4
-
11
-
-
79955940628
-
Selection and validation of reference genes for quantitative real-time PCR in buckwheat (Fagopyrum esculentum) based on transcriptome sequence data
-
Demidenko N.V., Logacheva M.D., Penin A.A. Selection and validation of reference genes for quantitative real-time PCR in buckwheat (Fagopyrum esculentum) based on transcriptome sequence data. PLoS One 2011, 6:e19434.
-
(2011)
PLoS One
, vol.6
-
-
Demidenko, N.V.1
Logacheva, M.D.2
Penin, A.A.3
-
12
-
-
3142615272
-
Validation of housekeeping genes for normalizing RNA expression in real-time PCR
-
Dheda K., Huggett J.F., Bustin S.A., Johnson M.A., Rook G., Zumla A. Validation of housekeeping genes for normalizing RNA expression in real-time PCR. Biotechniques 2004, 37:112-119.
-
(2004)
Biotechniques
, vol.37
, pp. 112-119
-
-
Dheda, K.1
Huggett, J.F.2
Bustin, S.A.3
Johnson, M.A.4
Rook, G.5
Zumla, A.6
-
13
-
-
3543040014
-
Complex SNP-related sequence variation in segmental genome duplications
-
Fredman D., White S.J., Potter S., Eichler E.E., Johan T.D., Anthony J.B. Complex SNP-related sequence variation in segmental genome duplications. Nat. Genet. 2004, 36:861-866.
-
(2004)
Nat. Genet.
, vol.36
, pp. 861-866
-
-
Fredman, D.1
White, S.J.2
Potter, S.3
Eichler, E.E.4
Johan, T.D.5
Anthony, J.B.6
-
14
-
-
10344219946
-
Catalase is encoded by a multigene family in Arabidopsis thaliana L. Heyhn
-
Frugoli J.A., et al. Catalase is encoded by a multigene family in Arabidopsis thaliana L. Heyhn. Plant Physiol. 1996, 112:327-336.
-
(1996)
Plant Physiol.
, vol.112
, pp. 327-336
-
-
Frugoli, J.A.1
-
15
-
-
16544393722
-
An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase
-
Gao M.J., Parkin I., Lydiate D., Hannoufa A. An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase. Plant Mol. Biol. 2004, 55:417-431.
-
(2004)
Plant Mol. Biol.
, vol.55
, pp. 417-431
-
-
Gao, M.J.1
Parkin, I.2
Lydiate, D.3
Hannoufa, A.4
-
16
-
-
17544399730
-
Approach for defining endogenous reference genes in gene expression experiments
-
Garcia-Vallejo J.J., et al. Approach for defining endogenous reference genes in gene expression experiments. Anal. Biochem. 2004, 329:293-299.
-
(2004)
Anal. Biochem.
, vol.329
, pp. 293-299
-
-
Garcia-Vallejo, J.J.1
-
17
-
-
79960869920
-
A guideline to family-wide comparative state-of-the-art quantitative RT-PCR analysis exemplified with a Brassicaceae cross-species seed germination case study
-
Graeber K., Linkies A., Wood A.T., Leubner-Metzger G. A guideline to family-wide comparative state-of-the-art quantitative RT-PCR analysis exemplified with a Brassicaceae cross-species seed germination case study. Plant Cell 2011, 23:2045-2063.
-
(2011)
Plant Cell
, vol.23
, pp. 2045-2063
-
-
Graeber, K.1
Linkies, A.2
Wood, A.T.3
Leubner-Metzger, G.4
-
18
-
-
67650930085
-
Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references
-
Guenin S., Mauriat M., Pelloux J., Van Wuytswinkel O., Bellini C., Gutierrez L. Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references. J. Exp. Bot. 2009, 60:487-493.
-
(2009)
J. Exp. Bot.
, vol.60
, pp. 487-493
-
-
Guenin, S.1
Mauriat, M.2
Pelloux, J.3
Van Wuytswinkel, O.4
Bellini, C.5
Gutierrez, L.6
-
19
-
-
47249141242
-
The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants
-
Gutierrez L., et al. The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants. Plant Biotechnol. J. 2008, 6:609-618.
-
(2008)
Plant Biotechnol. J.
, vol.6
, pp. 609-618
-
-
Gutierrez, L.1
-
20
-
-
7444226814
-
Equivalence test in quantitative reverse transcription polymerase chain reaction: confirmation of reference genes suitable for normalization
-
Haller F., et al. Equivalence test in quantitative reverse transcription polymerase chain reaction: confirmation of reference genes suitable for normalization. Anal. Biochem. 2004, 335:1-9.
-
(2004)
Anal. Biochem.
, vol.335
, pp. 1-9
-
-
Haller, F.1
-
21
-
-
21344471138
-
Real-time RT-PCR normalisation; strategies and considerations
-
Huggett J., Dheda K., Bustin S., Zumla A. Real-time RT-PCR normalisation; strategies and considerations. Genes Immun. 2005, 6:279-284.
-
(2005)
Genes Immun.
, vol.6
, pp. 279-284
-
-
Huggett, J.1
Dheda, K.2
Bustin, S.3
Zumla, A.4
-
22
-
-
0344531001
-
Normalization of reverse transcription quantitative-PCR with housekeeping genes in rice
-
Kim B.R., Nam H.Y., Kim S.U., Kim S.I., Chang Y.J. Normalization of reverse transcription quantitative-PCR with housekeeping genes in rice. Biotechnol. Lett. 2003, 25:1869-1872.
-
(2003)
Biotechnol. Lett.
, vol.25
, pp. 1869-1872
-
-
Kim, B.R.1
Nam, H.Y.2
Kim, S.U.3
Kim, S.I.4
Chang, Y.J.5
-
23
-
-
84863638242
-
Analysis of Arabidopsis glucose insensitive growth mutants reveals the involvement of the plastidial copper transporter PAA1 in glucose-induced intracellular signaling
-
Lee S.A., et al. Analysis of Arabidopsis glucose insensitive growth mutants reveals the involvement of the plastidial copper transporter PAA1 in glucose-induced intracellular signaling. Plant Physiol. 2012, 159:1001-1012.
-
(2012)
Plant Physiol.
, vol.159
, pp. 1001-1012
-
-
Lee, S.A.1
-
24
-
-
75649133189
-
Ethylene interacts with abscisic acid to regulate endosperm rupture during germination: A comparative approach using Lepidium sativum and Arabidopsis thaliana
-
Linkies A., Müller K., Morris K., Turecková V., Wenk M., Cadman C.S.C., Corbineau F., Strnad M., Lynn J.R., Finch-Savage W.E., Leubner-Metzger G. Ethylene interacts with abscisic acid to regulate endosperm rupture during germination: A comparative approach using Lepidium sativum and Arabidopsis thaliana. Plant Cell. 2009, 21:3803-3822.
-
(2009)
Plant Cell.
, vol.21
, pp. 3803-3822
-
-
Linkies, A.1
Müller, K.2
Morris, K.3
Turecková, V.4
Wenk, M.5
Cadman, C.S.C.6
Corbineau, F.7
Strnad, M.8
Lynn, J.R.9
Finch-Savage, W.E.10
Leubner-Metzger, G.11
-
25
-
-
72149087968
-
Increasing seed mass and oil content in transgenic Arabidopsis by the overexpression of wri1-like gene from Brassica napus
-
Liu J., et al. Increasing seed mass and oil content in transgenic Arabidopsis by the overexpression of wri1-like gene from Brassica napus. Plant Physiol. Biochem. 2010, 48:9-15.
-
(2010)
Plant Physiol. Biochem.
, vol.48
, pp. 9-15
-
-
Liu, J.1
-
26
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A., Williams B.A., McCue K., Schaeffer L., Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 2008, 5:621-628.
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
27
-
-
27144456802
-
Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress
-
Nicot N., Hausman J.F., Hoffmann L., Evers D. Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J. Exp. Bot. 2005, 56:2907-2914.
-
(2005)
J. Exp. Bot.
, vol.56
, pp. 2907-2914
-
-
Nicot, N.1
Hausman, J.F.2
Hoffmann, L.3
Evers, D.4
-
28
-
-
79957966176
-
Selection of reference genes for gene expression studies in zucchini (Cucurbita pepo) using qPCR
-
Obrero A., Die J.V., Roman B., Gomez P., Nadal S., Gonzalez-Verdejo C.I. Selection of reference genes for gene expression studies in zucchini (Cucurbita pepo) using qPCR. J. Agric. Food Chem. 2011, 59:5402-5411.
-
(2011)
J. Agric. Food Chem.
, vol.59
, pp. 5402-5411
-
-
Obrero, A.1
Die, J.V.2
Roman, B.3
Gomez, P.4
Nadal, S.5
Gonzalez-Verdejo, C.I.6
-
29
-
-
1842483281
-
Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations
-
Pfaffl M.W., Tichopad A., Prgomet C., Neuvians T.P. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Biotechnol. Lett. 2004, 26:509-515.
-
(2004)
Biotechnol. Lett.
, vol.26
, pp. 509-515
-
-
Pfaffl, M.W.1
Tichopad, A.2
Prgomet, C.3
Neuvians, T.P.4
-
30
-
-
77954424658
-
Reference gene selection for real-time quantitative polymerase chain reaction of mRNA transcript levels in Chinese cabbage (Brassica rapa L. ssp. pekinensis)
-
Qi J.N., et al. Reference gene selection for real-time quantitative polymerase chain reaction of mRNA transcript levels in Chinese cabbage (Brassica rapa L. ssp. pekinensis). Plant Mol. Biol. Report. 2010, 28:597-604.
-
(2010)
Plant Mol. Biol. Report.
, vol.28
, pp. 597-604
-
-
Qi, J.N.1
-
31
-
-
0346728757
-
Guideline to reference gene selection for quantitative real-time PCR
-
Radonic A., Thulke S., Mackay I.M., Landt O., Siegert W., Nitsche A. Guideline to reference gene selection for quantitative real-time PCR. Biochem. Biophys. Res. Commun. 2004, 313:856-862.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.313
, pp. 856-862
-
-
Radonic, A.1
Thulke, S.2
Mackay, I.M.3
Landt, O.4
Siegert, W.5
Nitsche, A.6
-
32
-
-
0034694128
-
Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR
-
Schmittgen T.D., Zakrajsek B.A. Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. J. Biochem. Biophys. Methods 2000, 46:69-81.
-
(2000)
J. Biochem. Biophys. Methods
, vol.46
, pp. 69-81
-
-
Schmittgen, T.D.1
Zakrajsek, B.A.2
-
33
-
-
15444373286
-
Statistical modeling for selecting housekeeper genes
-
Szabo A., et al. Statistical modeling for selecting housekeeper genes. Genome Biol. 2004, 5:R59.
-
(2004)
Genome Biol.
, vol.5
-
-
Szabo, A.1
-
34
-
-
79959972478
-
Enhanced seed oil production in canola by conditional expression of Brassica napus LEAFY COTYLEDON1 and LEC1-LIKE in developing seeds
-
Tan H., et al. Enhanced seed oil production in canola by conditional expression of Brassica napus LEAFY COTYLEDON1 and LEC1-LIKE in developing seeds. Plant Physiol. 2010, 156:1577-1588.
-
(2010)
Plant Physiol.
, vol.156
, pp. 1577-1588
-
-
Tan, H.1
-
35
-
-
84861329780
-
Abiotic stress-inducible receptor-like kinases negatively control ABA signaling in Arabidopsis
-
Tanaka H., et al. Abiotic stress-inducible receptor-like kinases negatively control ABA signaling in Arabidopsis. Plant J. 2012, 70:599-613.
-
(2012)
Plant J.
, vol.70
, pp. 599-613
-
-
Tanaka, H.1
-
36
-
-
0032883806
-
Housekeeping genes as internal standards: use and limits
-
Thellin O., et al. Housekeeping genes as internal standards: use and limits. J. Biotechnol. 1999, 75:197-200.
-
(1999)
J. Biotechnol.
, vol.75
, pp. 197-200
-
-
Thellin, O.1
-
39
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
(RESEARCH0034)
-
Vandesompele J., et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3. (RESEARCH0034).
-
(2002)
Genome Biol.
, vol.3
-
-
Vandesompele, J.1
-
40
-
-
80053386792
-
The genome of the mesopolyploid crop species Brassica rapa
-
Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., et al. The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics. 2011, 43:1035-1039.
-
(2011)
Nature Genetics.
, vol.43
, pp. 1035-1039
-
-
Wang, X.1
Wang, H.2
Wang, J.3
Sun, R.4
Wu, J.5
Liu, S.6
-
41
-
-
77952683138
-
Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa
-
Wei L.Q., Xu W.Y., Deng Z.Y., Su Z., Xue Y., Wang T. Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa. BMC Genomics 2010, 11:338.
-
(2010)
BMC Genomics
, vol.11
, pp. 338
-
-
Wei, L.Q.1
Xu, W.Y.2
Deng, Z.Y.3
Su, Z.4
Xue, Y.5
Wang, T.6
-
42
-
-
40349091686
-
An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets
-
Winter D., Vinegar D., Nahal H., Ammar R., Wilson G.V., Provart N.J. An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS ONE 2007, 2:e718.
-
(2007)
PLoS ONE
, vol.2
-
-
Winter, D.1
Vinegar, D.2
Nahal, H.3
Ammar, R.4
Wilson, G.V.5
Provart, N.J.6
-
44
-
-
84861705499
-
Disruption of OPR7 and OPR8 reveals the versatile functions of jasmonic acid in maize development and defense
-
Yan Y., et al. Disruption of OPR7 and OPR8 reveals the versatile functions of jasmonic acid in maize development and defense. Plant Cell 2012, 24:1420-1436.
-
(2012)
Plant Cell
, vol.24
, pp. 1420-1436
-
-
Yan, Y.1
|