Reference genes to quantify gene expression during oogenesis in a teleost fish

Gene

Volumn 506, Issue 1, 2012, Pages 69-75

  Deloffre, Laurence A M ^a   Andrade, André ^a   Filipe, Alexandra I ^a   Canario, Adelino V M ^a  

^a UNIVERSITY OF ALGARVE   (Portugal)

Author keywords

Normalization; Oocyte maturation stage; Oreochromis mossambicus; qPCR

Indexed keywords

ALPHA TUBULIN; BETA ACTIN; BONE MORPHOGENETIC PROTEIN; CATHEPSIN D; CATHEPSIN X; ELONGATION FACTOR 1ALPHA; TATA BINDING PROTEIN;

ARTICLE; GENE EXPRESSION; GENE IDENTIFICATION; OOCYTE DEVELOPMENT; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION; TELEOST; VITELLOGENESIS;

ACTINS; ANIMALS; BASE SEQUENCE; CATHEPSIN D; CATHEPSIN Z; DNA PRIMERS; FEMALE; FISH PROTEINS; GENE EXPRESSION; GENETIC MARKERS; OOGENESIS; PEPTIDE ELONGATION FACTOR 1; REAL-TIME POLYMERASE CHAIN REACTION; TATA-BOX BINDING PROTEIN; TILAPIA; TUBULIN;

OREOCHROMIS MOSSAMBICUS; TELEOSTEI;

EID: 84864506216     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.06.047     Document Type: Article

References (45)

1. Andersen C.L., Jensen J.L., Ørntoft T.F. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004, 64:5245-5250.
2. ASAB Guidelines for the treatment of animals in behavioural research and teaching. Anim. Behav. 2003, 65:249-255.
3. Aursnes I., Rishovd A.L., Karlsen H.E., Gjøen T. Validation of reference genes for quantitative RT-qPCR studies of gene expression in Atlantic cod (Gadus morhua L.) during temperature stress. BMC Res. Notes 2011, 4:104.
4. Baron D., Houlgatte R., Fostier A., Guiguen Y. Large-scale temporal gene expression profiling during gonadal differentiation and early gametogenesis in rainbow trout. Biol. Reprod. 2005, 73:959-966.
5. Bobe J., Nguyen T., Jalabert B. Targeted gene expression profiling in the rainbow trout (Oncorhynchus mykiss) ovary during maturational competence acquisition and oocyte maturation. Biol. Reprod. 2004, 71:73-82.
6. Bonnet E., Fostier A., Bobe J. Characterization of rainbow trout egg quality: a case study using four different breeding protocols, with emphasis on the incidence of embryonic malformations. Theriogenology 2007, 67:786-794.
7. Bower N.I., Johnston I.A. Selection of reference genes for expression studies with fish myogenic cell cultures. BMC Mol. Biol. 2009, 10:80.
8. Bustin S.A., et al. The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin. Chem. 2009, 55:611-622.
9. Canonico G., Arthington A., McCrary J.K., Thieme M. Aquacultural engineering. Aquat. Conserv. Mar. Freshwat. Ecosyst. 2005, 15:463-483.
10. Cavailles V., Augereau P., Rochefort H. Cathepsin-D gene is controlled by a mixed promoter, and estrogens stimulate only TATA-dependent transcription in breast-cancer cells. Proc. Natl. Acad. Sci. U. S. A. 1993, 90:203-207.
11. Cleveland B.M., Weber G.M. Effects of sex steroids on indices of protein turnover in rainbow trout (Oncorhynchus mykiss) white muscle. Gen. Comp. Endocrinol. 2011, 174:132-142.
12. de Jonge H.J., et al. Evidence based selection of housekeeping genes. PLoS One 2007, 2:e898.
13. Fabra M., Cerdà J. Ovarian cysteine proteinases in the teleost Fundulus heteroclitus: molecular cloning and gene expression during vitellogenesis and oocyte maturation. Mol. Reprod. Dev. 2004, 67:282-294.
14. Fernandez J.M.O., Mommens M., Hagen Ø., Babiak I., Solberg C. Selection of suitable reference genes for real-time PCR studies of Atlantic halibut development. Comp. Biochem. Physiol. B. Biochem. Mol. Biol. 2008, 150:23-32.
15. Gollapudi L., Oblinger M.M. Estrogen effects on neurite outgrowth and cytoskeletal gene expression in ERα-transfected PC12 cell lines. Exp. Neurol. 2001, 171:308-316.
16. Gosden R.G. Oogenesis as a foundation for embryogenesis. Mol. Cell. Endocrinol. 2002, 186:149-153.
17. Gutierrez L., et al. The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants. Plant Biotechnol. J. 2008, 6:609-618.
18. Halikakoty G., Biswas S.P. Studies on certain aspects of the reproductive biology of mouth-brooding tilapia, Oreochromis mossambicus (Peters) from Assam, India. Proceedings of the 6th International Symposium on Tilapia in Aquaculture, 12-16 Sept., 2004, Manila, Philippines 2005, 112-126. R. Bolivar, G. Mair, K. Fitzsimmons (Eds.).
19. Heasman J. Maternal determinants of embryonic cell fate. Semin. Cell Dev. Biol. 2006, 17:93-98.
20. Hugget J., Dheda K., Bustin S., Zumla A. Real-time RT-PCR normalisation: strategies and considerations. Genes Immun. 2005, 1-6.
21. Infante C., Matsuoka M.P., Asensio E., Canavate J.P., Reith M., Manchado M. Selection of housekeeping genes for gene expression studies in larvae from flatfish using real-time PCR. BMC Mol. Biol. 2008, 9:28.
22. Jorgensen S.M., Kleveland E.J., Grimholt U., Gjoen T. Validation of reference genes for real-time polymerase chain reaction studies in Atlantic salmon. Mar. Biotechnol. 2005, 8:398-408.
23. Kroupova H., Trubiroha A., Wuertz S., Kloas W. Stage-dependent differences in RNA composition and content affect the outcome of expression profiling in roach (Rutilus rutilus) ovary. Comp. Biochem. Physiol. A. Mol. Integr. Physiol. 2011, 159:141-149.
24. Kwon J.Y., Prat F., Randall C., Tyler C.R. Molecular characterization of putative yolk processing enzymes and their expression during oogenesis and embryogenesis in rainbow trout (Oncorhynchus mykiss). Biol. Reprod. 2001, 65:1701-1709.
25. Lankford S.E., Weber G.M. The maturation-inducing hormone 17α,20β-dihydroxy-4-pregnen-3-one regulates gene expression of inhibin βA and bambi (bone morphogenetic protein and activin-membrane-bound inhibitor) in the rainbow trout ovary. Gen. Comp. Endocrinol. 2010, 168:369-376.
26. Lankford S.E., Weber G.M. Temporal mRNA expression of transforming growth factor-β superfamily members and inhibitors in the developing rainbow trout ovary. Gen. Comp. Endocrinol. 2010, 166:250-258.
27. Lee P.D., Sladek R., Greenwood C.M., Hudson T.J. Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies. Genome Res. 2002, 12:292-297.
28. Liarte S., et al. Estrogen-responsive genes in macrophages of the bony fish gilthead seabream: a transcriptomic approach. Dev. Comp. Immunol. 2011, 35:840-849.
29. Lubzens E., Young G., Bobe J., Cerda J. Oogenesis in teleosts: how eggs are formed. Gen. Comp. Endocrinol. 2010, 165:367-389.
30. Luckenbach J.A., Goetz F.W., Swanson P. Expressed sequence tags (ESTs) of follicle/interstitial cell enriched ovarian tissue from previtellogenic coho salmon. Cybium 2008, 32:142-144.
31. Luckenbach J.A., Iliev D.B., Goetz F.W., Swanson P. Identification of differentially expressed ovarian genes during the primary and early secondary oocyte growth in coho salmon, Oncorhynchus kisutch. Reprod. Biol. Endocrinol. 2008, 6.
32. Newport J., Kirschner M. A major developmental transition in early Xenopus embryos: I. Characterization and timing of cellular changes at the midblastula stage. Cell 1982, 30:675-686.
33. Newport J., Kirschner M. A major developmental transition in early Xenopus embryos: II. Control of the onset of transcription. Cell 1982, 30:687-696.
34. Øvergard A.C., Nerland A.H., Patel D.H. Evaluation of potential reference genes for real time RT-PCR studies in Atlantic halibut (Hippoglossus hippoglossus L.); during development, in tissues of healthy and NNV-injected fish, and in anterior kidney leucocytes. BMC Mol. Biol. 2010, 11:36.
35. Pfaffl M.W. A new mathematical model for relative quantification in real time RT-PCR. Nucleic Acids Res. 2001, 29:e45.
36. Pfaffl M.W., Tichopad A., Prgomet C., Neuvians T.P. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations. Biotechnol. Lett. 2004, 26:509-515.
37. Rideout R.M., Trippel E.A., Litvak M.K. Predicting haddock embryo viability based on early cleavage patterns. Aquaculture 2004, 230:215-228.
38. Schroder A.L., Pelch K.E., Nagel S.C. Estrogen modulates expression of putative housekeeping genes in the mouse uterus. Endocrine 2009, 35:211-219.
39. Sekiya T., Oda T., Matsuura K., Akiyama T. Transcriptional regulation of the TGF-β pseudoreceptor BAMBI by TGF-β signaling. Biochem. Biophys. Res. Commun. 2004, 320:680-684.
40. Srijunngam J., Wattanasirmkit K. Histological structures of Nile tilapia Oreochromis niloticus Linn. ovary. Nat. Hist. J. Chulalongkorn Univ. 2001, 1:53-59.
41. Suzuki T., Higgins P.J., Crawford D.R. Control selection for RNA quantification. Biotechniques 2000, 29:332-337.
42. Thellin O., et al. Housekeeping genes as internal standards: use and limits. J. Biotechnol. 1999, 75:2-3.
43. Tingaud-Sequeira A., Chauvigné F., Lozano J., Agulleiro M.J., Asensio E., Cerdà J. New insights into molecular pathways associated with flatfish ovarian development and atresia revealed by transcriptional analysis. BMC Genomics 2009, 10:434.
44. Vandesompele J., et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3. (RESEARCH0034).
45. Von Schalburg K.R., Rise M.L., Brown G.D., Davidson W.S., Koop B.F. A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary. Biol. Reprod. 2005, 72:687-699.