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Volumn 30, Issue 3, 2014, Pages 1101-1110

Herbicides induce change in metabolic and genetic diversity of bacterial community from a cold oligotrophic lake

Author keywords

Bacterial diversity; Cold oligotrophic pristine lake; Herbicides

Indexed keywords

2 ,4-DICHLOROPHENOXYACETIC ACID; BACTERIAL COMMUNITY COMPOSITION; BACTERIAL COMPOSITION; BACTERIAL DIVERSITY; DENATURING GRADIENT GEL ELECTROPHORESES (DGGE); EPIFLUORESCENCE MICROSCOPY; ORGANIC TOXIC COMPOUNDS; PHYSICAL AND CHEMICAL CHARACTERISTICS;

EID: 84893757182     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-013-1530-y     Document Type: Article
Times cited : (11)

References (49)
  • 1
    • 61849117972 scopus 로고    scopus 로고
    • Degradation of 2, 4, 6 tribromophenol and 2, 4, 6 trichlorophenol by aerobic heterotrophic bacteria present in psychrophilic lakes
    • Aguayo J, Barra R, Becerra J, Martínez M (2009) Degradation of 2, 4, 6 tribromophenol and 2, 4, 6 trichlorophenol by aerobic heterotrophic bacteria present in psychrophilic lakes. World J Microbiol Biotechnol 25: 553-560.
    • (2009) World J Microbiol Biotechnol , vol.25 , pp. 553-560
    • Aguayo, J.1    Barra, R.2    Becerra, J.3    Martínez, M.4
  • 4
    • 35748958457 scopus 로고    scopus 로고
    • Daphnia distribution in Andean Patagonian lakes: effect of low food quality and fish predation
    • Balseiro G, Modenutti B, Queimaliños C, Reissig M (2007) Daphnia distribution in Andean Patagonian lakes: effect of low food quality and fish predation. Aquat Ecol 41: 599-609.
    • (2007) Aquat Ecol , vol.41 , pp. 599-609
    • Balseiro, G.1    Modenutti, B.2    Queimaliños, C.3    Reissig, M.4
  • 5
    • 24744432523 scopus 로고    scopus 로고
    • Simazine biodegradation in soil: analysis of bacterial community structure by in situ hybridization
    • Barra-Caracciolo A, Grenni P, Ciccoli R, Di Landa G, Cremisini C (2005) Simazine biodegradation in soil: analysis of bacterial community structure by in situ hybridization. Pest Manag Sci 61: 863-869.
    • (2005) Pest Manag Sci , vol.61 , pp. 863-869
    • Barra-Caracciolo, A.1    Grenni, P.2    Ciccoli, R.3    Di Landa, G.4    Cremisini, C.5
  • 6
    • 46749150088 scopus 로고    scopus 로고
    • The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity
    • Bent J, Forney L (2008) The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity. ISME J 2: 689-695.
    • (2008) ISME J , vol.2 , pp. 689-695
    • Bent, J.1    Forney, L.2
  • 7
    • 0036202170 scopus 로고    scopus 로고
    • Evaluation of nested PCR-DGGE (Denaturing gradient gel electrophoresis) with group-specific 16s rRNA primers for the analysis of bacterial communities from different wastewater treatment plants
    • Boon N, De Windt W, Verstraete W, Top M (2002) Evaluation of nested PCR-DGGE (Denaturing gradient gel electrophoresis) with group-specific 16s rRNA primers for the analysis of bacterial communities from different wastewater treatment plants. FEMS Microbiol Ecol 39: 101-112.
    • (2002) FEMS Microbiol Ecol , vol.39 , pp. 101-112
    • Boon, N.1    De Windt, W.2    Verstraete, W.3    Top, M.4
  • 8
    • 0007476290 scopus 로고    scopus 로고
    • Mineralogical and geochemical indicator techniques
    • W. Last and J. P. Smol (Eds.), New York: Springer
    • Boyle J (2002) Mineralogical and geochemical indicator techniques. In: Last W, Smol JP (eds) Tracking environmental change using lake sediments. Springer, New York, pp 83-141.
    • (2002) Tracking Environmental Change Using Lake Sediments , pp. 83-141
    • Boyle, J.1
  • 9
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
    • Brosius J, Palmer M, Kennedy P, Nollerm H (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci USA 75: 4801-4805.
    • (1978) Proc Natl Acad Sci USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, M.2    Kennedy, P.3    Nollerm, H.4
  • 10
  • 11
    • 0042208402 scopus 로고    scopus 로고
    • Life under nutrient limitation in oligotrophic marine environments: an eco/physiological perspective of Sphingopyxis alaskiensis (Formerly Sphingomonas alaskiensis)
    • Cavicchioli R, Ostrowski M, Fegatela F, Goodchild A, Boixereus G (2003) Life under nutrient limitation in oligotrophic marine environments: an eco/physiological perspective of Sphingopyxis alaskiensis (Formerly Sphingomonas alaskiensis). Microbial Ecol 45: 203-217.
    • (2003) Microbial Ecol , vol.45 , pp. 203-217
    • Cavicchioli, R.1    Ostrowski, M.2    Fegatela, F.3    Goodchild, A.4    Boixereus, G.5
  • 13
    • 0034068899 scopus 로고    scopus 로고
    • Natural assemblages of marine proteobacteria and members of the cytophaga-flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
    • Cottrell M, Kirchman D (2000) Natural assemblages of marine proteobacteria and members of the cytophaga-flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl Environ Microbiol 66: 1692-1697.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1692-1697
    • Cottrell, M.1    Kirchman, D.2
  • 14
    • 34249902825 scopus 로고    scopus 로고
    • Epilithic cyanobacterial communities of a marine tropical beach rock (Heron Island, Great Barrier Reef): diversity and diazotrophy
    • Díez B, Bauer K, Bergman B (2007) Epilithic cyanobacterial communities of a marine tropical beach rock (Heron Island, Great Barrier Reef): diversity and diazotrophy. Appl Environ Microbiol 73: 3656-3668.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 3656-3668
    • Díez, B.1    Bauer, K.2    Bergman, B.3
  • 15
    • 0030063913 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
    • Ferris M, Muyzer G, Ward D (1996) Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl Environ Microbiol 62: 340-346.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 340-346
    • Ferris, M.1    Muyzer, G.2    Ward, D.3
  • 16
    • 0029661576 scopus 로고    scopus 로고
    • Analytical approaches to the characterization of samples of microbial communities using patterns of potential source utilization
    • Garland J (1996) Analytical approaches to the characterization of samples of microbial communities using patterns of potential source utilization. Soil Biol Biochem 28: 213-221.
    • (1996) Soil Biol Biochem , vol.28 , pp. 213-221
    • Garland, J.1
  • 17
    • 34548727434 scopus 로고    scopus 로고
    • The importance of culturing bacterioplankton in the omics age
    • Giovanonni S, Stingl U (2007) The importance of culturing bacterioplankton in the omics age. Nature Rev Microbiol 5: 820-826.
    • (2007) Nature Rev Microbiol , vol.5 , pp. 820-826
    • Giovanonni, S.1    Stingl, U.2
  • 18
    • 0038748083 scopus 로고    scopus 로고
    • Poly-b-hydroxyalkanoates consumption during degradation of 2,4,6-trichlorophenol by Sphingopyxis chilensis S37
    • Godoy F, Bunster M, Matus V, Aranda C, Gonzalez B, Martínez M (2003) Poly-b-hydroxyalkanoates consumption during degradation of 2, 4, 6-trichlorophenol by Sphingopyxis chilensis S37. Lett Appl Microbiol 36: 315-320.
    • (2003) Lett Appl Microbiol , vol.36 , pp. 315-320
    • Godoy, F.1    Bunster, M.2    Matus, V.3    Aranda, C.4    Gonzalez, B.5    Martínez, M.6
  • 19
    • 33746857357 scopus 로고    scopus 로고
    • Soil bacteria functional diversity as influenced by organic amendment application
    • Gomez E, Ferreras L, Toresani S (2006) Soil bacteria functional diversity as influenced by organic amendment application. Bioresource Technol 97: 1484-1489.
    • (2006) Bioresource Technol , vol.97 , pp. 1484-1489
    • Gomez, E.1    Ferreras, L.2    Toresani, S.3
  • 20
    • 0034508884 scopus 로고    scopus 로고
    • Ecological resilience in theory and application
    • Gunderson L (2000) Ecological resilience in theory and application. Annu Rev Ecol Syst 31: 425-439.
    • (2000) Annu Rev Ecol Syst , vol.31 , pp. 425-439
    • Gunderson, L.1
  • 21
    • 0004843445 scopus 로고
    • Methods for enumerating microorganisms and determining biomass in natural environments
    • p 619, R. Grigovora and J. R. Norris (Eds.), London: Academic Press
    • Herbert RA (1990) Methods for enumerating microorganisms and determining biomass in natural environments. In: Grigovora R, Norris JR (eds) Methods in microbiology: techniques in microbial ecology, vol 22. Academic Press, London p 619.
    • (1990) Methods in Microbiology: Techniques in Microbial Ecology , vol.22
    • Herbert, R.A.1
  • 22
    • 0023840912 scopus 로고
    • Microbial decomposition in aquatic environments: combined process of extracellular enzyme activity and substrate uptake
    • Hoppe H, Kim S, Gocke K (1988) Microbial decomposition in aquatic environments: combined process of extracellular enzyme activity and substrate uptake. Appl Environ Microbiol 54: 784-790.
    • (1988) Appl Environ Microbiol , vol.54 , pp. 784-790
    • Hoppe, H.1    Kim, S.2    Gocke, K.3
  • 23
    • 64649092941 scopus 로고    scopus 로고
    • The phototrophic alpha-proteobacteria
    • 3rd edn., M. Dworkin, S. Falkow, E. Rosenberg, K. Schleifer, and E. Stackebrandt (Eds.), Minneapolis: Springer
    • Imhoff J (2006) The phototrophic alpha-proteobacteria. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K, Stackebrandt E (eds) The prokaryotes, 3rd edn. Springer, Minneapolis, pp 41-64.
    • (2006) The Prokaryotes , pp. 41-64
    • Imhoff, J.1
  • 24
    • 33745145824 scopus 로고    scopus 로고
    • Microbial diversity in water and sediment of lake Chaka, an Athalassohaline lake in Northwestern China
    • Jiang H, Dong H, Zhang G, Yu B, Chapman L, Matthew F (2006) Microbial diversity in water and sediment of lake Chaka, an Athalassohaline lake in Northwestern China. Appl Environ Microbiol 72: 3832-3845.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3832-3845
    • Jiang, H.1    Dong, H.2    Zhang, G.3    Yu, B.4    Chapman, L.5    Matthew, F.6
  • 25
    • 0034954171 scopus 로고    scopus 로고
    • Pesticide effects on bacterial diversity in agricultural soils: a review
    • Johnsen K, Jacobsen S, Torsvik V, Sørensen J (2001) Pesticide effects on bacterial diversity in agricultural soils: a review. Biol Fert Soils 33: 443-453.
    • (2001) Biol Fert Soils , vol.33 , pp. 443-453
    • Johnsen, K.1    Jacobsen, S.2    Torsvik, V.3    Sørensen, J.4
  • 26
    • 0035214837 scopus 로고    scopus 로고
    • Structural diversity of microorganisms in chemically perturbed soil assessed by molecular and cytochemical approaches
    • Kozdrój J, van-Elsas J (2001) Structural diversity of microorganisms in chemically perturbed soil assessed by molecular and cytochemical approaches. J Microbiol Methods 43: 197-212.
    • (2001) J Microbiol Methods , vol.43 , pp. 197-212
    • Kozdrój, J.1    van-Elsas, J.2
  • 27
    • 14844321317 scopus 로고    scopus 로고
    • Does autochthonous primary production drive variability in bacterial metabolism and growth efficiency in lakes dominated by terrestrial C inputs
    • Kritzberg E, Cole J, Pace M, Graneli W (2005) Does autochthonous primary production drive variability in bacterial metabolism and growth efficiency in lakes dominated by terrestrial C inputs. Aquat Microb Ecol 38: 103-111.
    • (2005) Aquat Microb Ecol , vol.38 , pp. 103-111
    • Kritzberg, E.1    Cole, J.2    Pace, M.3    Graneli, W.4
  • 28
    • 0038442785 scopus 로고    scopus 로고
    • Isotherms for Atrazine desorption from two surface soils
    • Lesan H, Bhandai A (2003) Isotherms for Atrazine desorption from two surface soils. Environ Eng Sci 3: 257-263.
    • (2003) Environ Eng Sci , vol.3 , pp. 257-263
    • Lesan, H.1    Bhandai, A.2
  • 29
    • 80053329724 scopus 로고    scopus 로고
    • Metabolic and molecular analysis of aerobic heterotrophic bacteria in cold-oligotrophic freshwater ecosystems
    • Mackenzie R, Barros J, Martínez M (2011) Metabolic and molecular analysis of aerobic heterotrophic bacteria in cold-oligotrophic freshwater ecosystems. World J Microbiol Biotechnol 27: 2499-2504.
    • (2011) World J Microbiol Biotechnol , vol.27 , pp. 2499-2504
    • Mackenzie, R.1    Barros, J.2    Martínez, M.3
  • 30
    • 0032918422 scopus 로고    scopus 로고
    • Modes of action of nitrification inhibitors
    • McCarty G (1999) Modes of action of nitrification inhibitors. Biol Fertil Soils 29: 1-9.
    • (1999) Biol Fertil Soils , vol.29 , pp. 1-9
    • McCarty, G.1
  • 31
    • 77955271106 scopus 로고    scopus 로고
    • Gustiness: the driver of glacial dustiness?
    • McGee D, Broecker W, Winckler G (2010) Gustiness: the driver of glacial dustiness? Quaternary Sci Rev 29: 2340-2350.
    • (2010) Quaternary Sci Rev , vol.29 , pp. 2340-2350
    • McGee, D.1    Broecker, W.2    Winckler, G.3
  • 33
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for rRNA
    • Muyzer G, Dewaal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for rRNA. Appl Environ Microbiol 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    Dewaal, E.C.2    Uitterlinden, A.G.3
  • 34
    • 0034233490 scopus 로고    scopus 로고
    • Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products
    • Nakatsu C, Torsvik V, Øvreås L (2000) Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products. Soil Sci Soc Am J 64: 1382-1388.
    • (2000) Soil Sci Soc Am J , vol.64 , pp. 1382-1388
    • Nakatsu, C.1    Torsvik, V.2    Øvreås, L.3
  • 35
    • 71449111444 scopus 로고    scopus 로고
    • Poly-b-Hydroxyalkanoate exert a protective effect against carbon starvation and frozen conditions in Sphingopyxis chilensis
    • Pavez P, Castillo J, González C, Martínez M (2009) Poly-b-Hydroxyalkanoate exert a protective effect against carbon starvation and frozen conditions in Sphingopyxis chilensis. Curr Microbiol 59: 636-640.
    • (2009) Curr Microbiol , vol.59 , pp. 636-640
    • Pavez, P.1    Castillo, J.2    González, C.3    Martínez, M.4
  • 36
    • 39649094943 scopus 로고    scopus 로고
    • Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction
    • Pinchuk G, Ammons C, Culley D, Li S, McLean J, Romine M, Nealson K, Fredrickson J, Beliaev A (2008) Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction. Appl Environ Microbiol 74: 1198-1208.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 1198-1208
    • Pinchuk, G.1    Ammons, C.2    Culley, D.3    Li, S.4    McLean, J.5    Romine, M.6    Nealson, K.7    Fredrickson, J.8    Beliaev, A.9
  • 37
    • 16544383866 scopus 로고    scopus 로고
    • Effect to trophic status on the culturability and activity of bacteria from a range of lakes in the English lake district
    • Porter J, Morris S, Pickup R (2004) Effect to trophic status on the culturability and activity of bacteria from a range of lakes in the English lake district. Appl Environ Microbiol 70: 2072-2078.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2072-2078
    • Porter, J.1    Morris, S.2    Pickup, R.3
  • 38
    • 0002972038 scopus 로고    scopus 로고
    • Effect of the pesticide 2,4-D on microbial activity of the soil monitored by microcalorimetry
    • Prado A, Airoldi C (2000) Effect of the pesticide 2, 4-D on microbial activity of the soil monitored by microcalorimetry. Thermochim Acta 349: 17-22.
    • (2000) Thermochim Acta , vol.349 , pp. 17-22
    • Prado, A.1    Airoldi, C.2
  • 39
    • 77951031635 scopus 로고    scopus 로고
    • Sediment records of highly variable mercury inputs to mountain lakes in Patagonia during the past millennium
    • Ribeiro Guevara S, Meili M, Rizzo A, Daga R, Arribere M (2010) Sediment records of highly variable mercury inputs to mountain lakes in Patagonia during the past millennium. Atmos Chem Phys 10: 3443-3453.
    • (2010) Atmos Chem Phys , vol.10 , pp. 3443-3453
    • Ribeiro Guevara, S.1    Meili, M.2    Rizzo, A.3    Daga, R.4    Arribere, M.5
  • 40
    • 16344377345 scopus 로고    scopus 로고
    • Sedimentary processes on a Gilbert-type delta in lake Llanquihue southern Chile
    • Rojas E, Le Roux J (2005) Sedimentary processes on a Gilbert-type delta in lake Llanquihue southern Chile. Rev Geol Chile 32: 19-31.
    • (2005) Rev Geol Chile , vol.32 , pp. 19-31
    • Rojas, E.1    Le Roux, J.2
  • 41
    • 84877920735 scopus 로고    scopus 로고
    • Some backgrounds on the short October 2011 eruption at Mt. Hudson, 45°30′S, Southern Andes, Pyroclastic flow
    • Romero J (2012) Some backgrounds on the short October 2011 eruption at Mt. Hudson, 45°30′S, Southern Andes, Pyroclastic flow. J Geol 1: 1-8.
    • (2012) J Geol , vol.1 , pp. 1-8
    • Romero, J.1
  • 42
    • 33748422932 scopus 로고    scopus 로고
    • Molecular and physiological bacterial diversity of a semi-arid soil contaminated with different levels of formulated atrazine
    • Ros M, Goberna M, Moreno J, Hernández T, García C, Insam H, Pascual J (2006) Molecular and physiological bacterial diversity of a semi-arid soil contaminated with different levels of formulated atrazine. Appl Soil Ecol 34: 93-102.
    • (2006) Appl Soil Ecol , vol.34 , pp. 93-102
    • Ros, M.1    Goberna, M.2    Moreno, J.3    Hernández, T.4    García, C.5    Insam, H.6    Pascual, J.7
  • 43
    • 0036622614 scopus 로고    scopus 로고
    • Oligotrophic patterns in southern Chile lakes: the relevance of nutrients and mixing depth
    • Soto D (2002) Oligotrophic patterns in southern Chile lakes: the relevance of nutrients and mixing depth. Rev Chil Hist Nat 75: 377-393.
    • (2002) Rev Chil Hist Nat , vol.75 , pp. 377-393
    • Soto, D.1
  • 45
    • 79957795485 scopus 로고    scopus 로고
    • Physico-chemical and bacteriological investigation on the river Cauvery of kollegal stretch in Karnataka
    • Venkatesharaju K, Ravikumar P, Somashekar R, Prakash K (2010) Physico-chemical and bacteriological investigation on the river Cauvery of kollegal stretch in Karnataka. J Sci Eng Technol 6: 50-59.
    • (2010) J Sci Eng Technol , vol.6 , pp. 50-59
    • Venkatesharaju, K.1    Ravikumar, P.2    Somashekar, R.3    Prakash, K.4
  • 46
    • 0000670810 scopus 로고
    • A scale of grade and class terms for clastic sediments
    • Wentworth C (1922) A scale of grade and class terms for clastic sediments. J Geol 30: 377-392.
    • (1922) J Geol , vol.30 , pp. 377-392
    • Wentworth, C.1
  • 47
    • 0032961167 scopus 로고    scopus 로고
    • Dissolved organic carbon and nutrients as regulators of lake ecosystems: resurrection of a more integrated paradigm Littitiol
    • Williamson C, Donald P, Morris D, Pace M, Olson O (1999) Dissolved organic carbon and nutrients as regulators of lake ecosystems: resurrection of a more integrated paradigm Littitiol. J Ocean 44: 795-803.
    • (1999) J Ocean , vol.44 , pp. 795-803
    • Williamson, C.1    Donald, P.2    Morris, D.3    Pace, M.4    Olson, O.5
  • 48
    • 1042279857 scopus 로고    scopus 로고
    • Trophic parameters and method validation in lake Riñihue (North Patagonia: Chile)
    • Woelfl S, Villalobos L, Parra O (2003) Trophic parameters and method validation in lake Riñihue (North Patagonia: Chile). Rev Chil Hist Nat 76: 459-474.
    • (2003) Rev Chil Hist Nat , vol.76 , pp. 459-474
    • Woelfl, S.1    Villalobos, L.2    Parra, O.3
  • 49
    • 0013456948 scopus 로고    scopus 로고
    • Seasonal patterns of the bacterioplankton community composition in a large mesotrophic lake
    • Zwisler W, Selje N, Simon M (2003) Seasonal patterns of the bacterioplankton community composition in a large mesotrophic lake. Aquat Microb Ecol 31: 211-225.
    • (2003) Aquat Microb Ecol , vol.31 , pp. 211-225
    • Zwisler, W.1    Selje, N.2    Simon, M.3


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