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Volumn 82, Issue 3, 2014, Pages 399-404

Wild type and mutants of the HET-s(218-289) prion show different flexibility at fibrillar ends: A simulation study

Author keywords

Aggregation; Amyloid; Fibril growth; Molecular dynamics

Indexed keywords

AMYLOID; FUNGAL PROTEIN; HET S (218-289) AMYLOID FIBRIL; PHENYLALANINE; PRION PROTEIN; TRYPTOPHAN; UNCLASSIFIED DRUG;

EID: 84893724428     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.24402     Document Type: Article
Times cited : (5)

References (29)
  • 1
    • 0030801746 scopus 로고    scopus 로고
    • The structure of amyloid fibrils by electron microscopy and X-ray diffraction
    • Sunde M, Blake C. The structure of amyloid fibrils by electron microscopy and X-ray diffraction. Adv Protein Chem 1997;50:123-159.
    • (1997) Adv Protein Chem , vol.50 , pp. 123-159
    • Sunde, M.1    Blake, C.2
  • 4
    • 62349083169 scopus 로고    scopus 로고
    • Protein misfolding and aggregation in ageing and disease: molecular processes and therapeutic perspectives
    • Tuite MF, Melki R. Protein misfolding and aggregation in ageing and disease: molecular processes and therapeutic perspectives. Prion 2007;1:116-120.
    • (2007) Prion , vol.1 , pp. 116-120
    • Tuite, M.F.1    Melki, R.2
  • 5
    • 35148865232 scopus 로고    scopus 로고
    • On the structural definition of amyloid fibrils and other polypeptide aggregates
    • Fändrich M. On the structural definition of amyloid fibrils and other polypeptide aggregates. Cell Mol Life Sci 2007;64:2066-2078.
    • (2007) Cell Mol Life Sci , vol.64 , pp. 2066-2078
    • Fändrich, M.1
  • 6
    • 77949848854 scopus 로고    scopus 로고
    • Prion-like transmission of protein aggregates in neurodegenerative diseases
    • Brundin P, Melki R, Kopito R. Prion-like transmission of protein aggregates in neurodegenerative diseases. Nat Rev Mol Cell Biol 2010;11:301-307.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , pp. 301-307
    • Brundin, P.1    Melki, R.2    Kopito, R.3
  • 7
    • 0030885650 scopus 로고    scopus 로고
    • The protein product of the het-s heterokaryon incompatibility gene of the fungus podospora anserina behaves as a prion analog
    • Coustou V, Deleu C, Saupe S, Begueret J. The protein product of the het-s heterokaryon incompatibility gene of the fungus podospora anserina behaves as a prion analog. Proc Natl Acad Sci USA 1997;94:9773-9778.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 9773-9778
    • Coustou, V.1    Deleu, C.2    Saupe, S.3    Begueret, J.4
  • 9
    • 40849120669 scopus 로고    scopus 로고
    • Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core
    • Wasmer C, Lange A, Van Melckebeke H, Siemer AB, Riek R, Meier BH. Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core. Science 2008;319:1523-1526.
    • (2008) Science , vol.319 , pp. 1523-1526
    • Wasmer, C.1    Lange, A.2    Van Melckebeke, H.3    Siemer, A.B.4    Riek, R.5    Meier, B.H.6
  • 10
    • 70349560022 scopus 로고    scopus 로고
    • A combined solid-state NMR and MD characterization of the stability and dynamics of the HET-s(218-289) prion in its amyloid conformation
    • Lange A, Gattin Z, Van Melckebeke H, Wasmer C, Soragni A, van Gunsteren WF, Meier BH. A combined solid-state NMR and MD characterization of the stability and dynamics of the HET-s(218-289) prion in its amyloid conformation. Chembiochem 2009;10:1657-1665.
    • (2009) Chembiochem , vol.10 , pp. 1657-1665
    • Lange, A.1    Gattin, Z.2    Van Melckebeke, H.3    Wasmer, C.4    Soragni, A.5    van Gunsteren, W.F.6    Meier, B.H.7
  • 11
    • 53549129515 scopus 로고    scopus 로고
    • Infectious and noninfectious amyloids of the HET-s(218-289) prion have different NMR spectra
    • Wasmer C, Soragni A, Sabaté R, Lange A, Riek R, Meier BH. Infectious and noninfectious amyloids of the HET-s(218-289) prion have different NMR spectra. Angew Chem Int Ed Engl 2008;47:5839-5841.
    • (2008) Angew Chem Int Ed Engl , vol.47 , pp. 5839-5841
    • Wasmer, C.1    Soragni, A.2    Sabaté, R.3    Lange, A.4    Riek, R.5    Meier, B.H.6
  • 16
    • 0029912748 scopus 로고    scopus 로고
    • Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
    • Jorgensen WL, Maxwell DS, Tirado-Rives J. Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids. J Am Chem Soc 1996;118:11225-11236.
    • (1996) J Am Chem Soc , vol.118 , pp. 11225-11236
    • Jorgensen, W.L.1    Maxwell, D.S.2    Tirado-Rives, J.3
  • 18
    • 0344796204 scopus 로고
    • Ion-water interaction potentials derived from free energy perturbation simulations
    • Åqvist J. Ion-water interaction potentials derived from free energy perturbation simulations. J Chem Phys 1990;94:8021-8024.
    • (1990) J Chem Phys , vol.94 , pp. 8021-8024
    • Åqvist, J.1
  • 19
    • 0021376732 scopus 로고
    • Energy component analysis for the hydration of Li+, Na+, F-, and Cl-
    • Chandrasekhar J, Spellmeyer DC, Jorgensen WL. Energy component analysis for the hydration of Li+, Na+, F-, and Cl-. J Am Chem Soc 1984;106:903-910.
    • (1984) J Am Chem Soc , vol.106 , pp. 903-910
    • Chandrasekhar, J.1    Spellmeyer, D.C.2    Jorgensen, W.L.3
  • 21
    • 84986440341 scopus 로고
    • SETTLE: an analytical version of the SHAKE and RATTLE algorithms for rigid water models
    • Miyamoto S, Kollman PA. SETTLE: an analytical version of the SHAKE and RATTLE algorithms for rigid water models. J Comp Chem 1992;13:952-962.
    • (1992) J Comp Chem , vol.13 , pp. 952-962
    • Miyamoto, S.1    Kollman, P.A.2
  • 22
    • 0001585978 scopus 로고    scopus 로고
    • Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems
    • Feenstra KA, Hess B, Berendsen HJC. Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems. J Comput Chem 1999;20:786-798.
    • (1999) J Comput Chem , vol.20 , pp. 786-798
    • Feenstra, K.A.1    Hess, B.2    Berendsen, H.J.C.3
  • 23
    • 33846086933 scopus 로고    scopus 로고
    • Canonical sampling through velocity rescaling
    • Bussi G, Donadio D, Parrinello M. Canonical sampling through velocity rescaling. J Chem Phys 2007;126:014101.
    • (2007) J Chem Phys , vol.126 , pp. 014101
    • Bussi, G.1    Donadio, D.2    Parrinello, M.3
  • 25
    • 33846823909 scopus 로고
    • Particle mesh ewald: an N-log(N) method for ewald sums in large systems
    • Darden T, York D, Pedersen L. Particle mesh ewald: an N-log(N) method for ewald sums in large systems. J Chem Phys 1993;98:10089-10092.
    • (1993) J Chem Phys , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 26
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983;22:2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 28
    • 80053943942 scopus 로고    scopus 로고
    • Fibril elongation mechanisms of HET-s prion-forming domain: topological evidence for growth polarity
    • Baiesi M, Seno F, Trovato A. Fibril elongation mechanisms of HET-s prion-forming domain: topological evidence for growth polarity. Proteins 2011;79:3067-3081.
    • (2011) Proteins , vol.79 , pp. 3067-3081
    • Baiesi, M.1    Seno, F.2    Trovato, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.