Comparison of quantitative trait loci controlling seedling characteristics at two seedling stages using rice recombinant inbred lines

Theoretical and Applied Genetics

Volumn 109, Issue 3, 2004, Pages 640-647

  Xu, C G ^a   Li, X Q ^a   Xue, Y ^a   Huang, Y W ^a   Gao, J ^a   Xing, Y Z ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES; MAPPING; PLANTS (BOTANY); SEED;

QUANTITATIVE TRAIT LOCI (QTL); ROOT DRY WEIGHT (RDW); SEEDLING GROWTH RATE; SHOOT DRY MATTER WEIGHT (SDW);

GENETIC ENGINEERING;

EID: 4344601323     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-004-1671-3     Document Type: Article

References (39)

1. Ali ML, Pathan MS, Zhang J, Bai G, Sarkarung S, Nguyen HT (2000) Mapping QTL for root traits in a recombinant inbred population from two indica ecotypes in rice. Theor Appl Genet 101:756-766
2. Asins MJ, Mestre P, Garcia JE, Dicenta F, Carbonell EA (1994) Genotype x environment interaction in QTLs analysis of an intervarietal almond cross by means of genetic markers. Theor Appl Genet 89:358-364
3. Basten CJ, Weir BS, Zeng ZB (2001) QTL CARTOGRAPHER, Version 1.15. Department of Statistics, North Carolina State University, Raleigh
4. Bradshaw HD Jr, Stettler RF (1995) Molecular genetics of growth and development in Populus. IV. Mapping QTLs with large effects on growth, form, and phenology traits in a forest tree. Genetics 139:963-973
5. Cao G, Zhu J, He C, Gao Y, Yan J, Wu P (2001) Impact of epistasis and QTL x environment interaction on the developmental behavior of plant height in rice (Oryza sativa L.). Theor Appl Genet 103:153-160
6. Champoux MC, Wang G, Sarkarung S, Mackill DJ, O'Toole JC, Huang N, McCouch SR (1995) Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers. Theor Appl Genet 90:969-981
7. Chang TT, Loresto GC, O' Toole JC, Armenta-Soto JL (1982) Strategy and methodology of breeding rice for drought-prone areas. In: IRRI (ed) Drought resistance in crops with the emphasis on rice. The International Rice Research Institute, Manila, pp 217-244
8. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963-971
9. Cui KH, Peng SB, Xing YZ, Xu CG, Yu SB, Zhang Q (2002) Molecular dissection of seedling vigor and associated physiological traits in rice. Theor Appl Genet 105:745-753
10. Ellis RH (1992) Seed and seedling vigor in relation to crop growth and yield. Plant Growth Regul 11:249-255
11. Ingram K, Bueno TFD, Namuco OS, Yambao EB, Beyrouty CA (1994) Rice root traits for drought resistance and their genetic variation. In: Kirk GJD (ed) Rice roots: nutrient and water use. The International Rice Research Institute, Manila, pp 67-77
12. Kamoshita A, Wade LJ, Ali ML, Pathan MS, Zhang J, Sarkarung S, Nguyen HT (2002) Mapping QTLs for root morphology of a rice population adapted to rainfed lowland conditions. Theor Appl Genet 104:880-893
13. Karrel EE, Chandler JM, Foolad MR, Rodriguez RL (1993) Correlation between α-amylase gene expression and seedling vigor in rice. Euphytica 66:163-169
14. Lin SY, Sasaki T, Yano M (1998) Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L, using backcross inbred lines. Theor Appl Genet 96:997-1003
15. Lin HX, Ashikari M, Yamanouchi U, Sasaki T, Yano M (2002) Identification and characterization of a quantitative trait locus, controlling heading date in rice. Breed Sci 52:35-42
16. Loresto GC, Zhang WX, Chaudhary D, Chang TT (1983) Aeroponic technique for screening the drought avoidance mechanism of rice genotypes by root characters. Garcia de Orta 10:77-82
17. McCouch SR, Cho YG, Yano M, Paul E, Blinstruub M (1997) Report on QTL nomenclature. Rice Genet Newsl 14:11-13
18. O'Toole JC, Bland WL (1987) Genotypic variation in crop plant root systems. Adv Agron 41:91-145
19. Plomion C, Durel CE, O'Malley DM (1996) Genetic dissection of height in maritime pine seedlings raised under accelerated growth conditions. Theor Appl Genet 93:849-858
20. Price AH, Tomos AD (1997) Genetic dissection of root growth in rice (Oryza sativa L.). II. Mapping quantitative trait loci using molecular markers. Theor Appl Genet 95:143-152
21. Price AH, Tomos AD, Virk DS (1997) Genetic dissection of root growth in rice (Oryza sativa L.). I. A hydroponic screen. Theor Appl Genet 95:132-142
22. Redoña ED, Mackill DJ (1996a) Genetic variation for seedling vigor traits in rice. Crop Sci 36:285-290
23. Redoña ED, Mackill DJ (1996b) Molecular mapping of quantitative trait loci in japonica rice. Genome 39:395-403
24. Redoña ED, Mackill DJ (1996c) Mapping quantitative trait loci for seedling vigor in rice using RFLPs. Theor Appl Genet 92:395-402
25. StatSoft (1997) Statistica. StatSoft, Tulsa, Okla.
26. Tan YF, Xing YZ, Li JX, Yu SB, Xu CG, Zhang Q (2000) Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid. Theor Appl Genet 101:823-829
27. Verhaegen D, Plomion C, Gion JM, Poitel M, Costa P, Kremer A (1997) Quantitative trait dissection analysis in Eucalyptus using RAPD markers. I. Detection of QTL in interspecific hybrid progeny, stability of QTL expression across different ages. Theor Appl Genet 95:597-608
28. de Vicente MC, Tanksley SD (1993) QTL analysis of transgressive segregation in an interspecific tomato cross. Genetics 134:585-596
29. Wu WR, Li WM, Tang DZ, Lu HR, Worland AJ (1999) Time-related mapping of quantitative trait loci underlying tiller number in rice. Genetics 151:297-303
30. Xing YZ, Tan YF, Xu CG, Hua JP, Sun XL (2001) Mapping and isolation of quantitative trait loci controlling plant height and heading date in rice. Acta Bot Sin 43:840-845
31. Xing YZ, Tan YF, Hua JP, Sun XL, Xu CG, Zhang Q (2002) Characterization of the main effects, epistatic effects and their environmental interactions of QTLs in the genetic basis of yield traits in rice. Theor Appl Genet 105:248-257
32. Yamamoto T, Lin HX, Sasaki T, Yano M (2000) Identification of heading date quantitative trait locus hd6, and characterization of its epistasis interaction with hd2 in rice using advanced backcross progeny. Genetics 154:885-891
33. Yan J, Zhu J, He C, Benmoussa M, Wu P (1998) Molecular dissection of developmental behavior of plant height in rice (Oryza sativa L). Genetics 150:1257-1265
34. Yadav R, Courtois B, Huang N, McLaren G (1997) Mapping genes controlling root morphology and root distribution in a doubled haploid population of rice. Theor Appl Genet 94:619-632
35. Yoshida S, Hasegawa S (1982) The rice root system: its development and function. In: IRRI (ed) Drought resistance in crops with the emphasis on rice. International Rice Research Institute, Manila, Philippines, pp 83-96
36. Yoshida S, Forno DA, Cock JH, Gomex KA (1976) Laboratory manual for physiological studies of rice. 3rd edn. International Rice Research Institute, Manila, Philippines
37. Yu SB, Li JX, Xu CG, Tan YF, Gao YJ, Li XH, Zhang Q, Saghai Maroof MA (1997) Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid. Proc Natl Acad Sci USA 94:9226-9231
38. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457-1468
39. Zheng HG, Babu RC, Pathan MS, Ali ML, Huang N, Courtois B, Nguyen HT (2000) Quantitative trait loci for root penetration ability and root thickness in rice: comparison of genetic backgrounds Genome 43:53-61