Erratum to Development and application of gene-based markers for the major rice QTL Phosphorus uptake 1 (Theor Appl Genet, 10.1007/s00122-009-1235-7);Development and application of gene-based markers for the major rice QTL Phosphorus uptake 1

Theoretical and Applied Genetics

Volumn 120, Issue 6, 2010, Pages 1073-1086

  Chin, Joong Hyoun ^a   Lu, Xiaochun ^b   Haefele, Stephan M ^a   Gamuyao, Rico ^a   Ismail, Abdelbagi ^a   Wissuwa, Matthias ^c   Heuer, Sigrid ^a  

^a INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^b ZHEJIANG UNIVERSITY   (China)

^c JAPAN INTERNATIONAL RESEARCH CENTER FOR AGRICULTURAL SCIENCES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DROUGHT; GRAIN GROWTH; PHOSPHORUS; PLANTS (BOTANY);

DEVELOPMENT AND APPLICATIONS; GENE-BASED MARKERS; GENETIC BACKGROUNDS; GENOTYPIC DIFFERENCES; MARKER-ASSISTED BREEDING; NEAR ISOGENIC LINES; QUANTITATIVE TRAIT LOCUS; RICE (ORYZA SATIVA L.);

GENES;

ORYZA SATIVA;

EID: 77950021090     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1286-9     Document Type: Erratum

References (36)

1. Bernier J, Kumar A, Venuprasad R, Spaner D, Atlin G (2007) A large-effect QTL for grain yield under reproductive-stage drought stress in upland rice. Crop Sci 47: 507-516.
2. Bernier J, Kumar A, Venuprasad R, Spaner D, Verulkar S, Mandal NP, Sinha PK, Peeraju P, Dongre PR, Mahto RN, Atlin G (2009) Characterization of the effect of a QTL for drought resistance in rice, qtl12. 1, over a range of environments in the Philippines and eastern India. Euphytica 166: 207-217.
3. Collard BCY, Mackill DJ (2008) Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Phil Trans R Soc B 363: 557-572.
4. Collard BCY, Thomson MJ, Penarubia M, Lu X, Heuer S, Wissuwa M, Mackill DJ, Ismail AM (2006) SSR analysis of rice near-isogenic lines (NILs) for P-deficiency tolerance. SABRAO J Breed Genet 38(2): 131-138.
5. Collins NC, Tardieu F, Tuberosa R (2008) Quantitative trait loci and crop performance under abiotic stress: where do we stand? Plant Physiol 147: 469-486.
6. FAO (2005) Fertilizer use by crop in Indonesia. www.fao.org.
7. Garris A, Tai TH, Coburn J, Krescovich S, McCouch S (2005) Genetic structure and diversity in Oryza sativa L. Genetics 169: 1631-1638.
8. Haefele SM, Hijmans RJ (2007) Soil quality in rice-based rainfed lowlands of Asia: characterization and distribution. In: Aggarwal PK, Ladha JK, Singh RK, Devakumar C, Hardy B (eds) Science, technology, and trade for peace and prosperity. Proceedings of the 26th international rice research conference, 9-12 October 2006, New Delhi, India. Los Baños (Philippines) and New Delhi (India): International Rice Research Institute, Indian Council of Agricultural Research, and National Academy of Agricultural Sciences, pp 297-308.
9. Hanson WC (1950) The photometric determination of phosphorus in fertilizers using the phosphovanado-molybdate complex. J Sci Food Agric 1: 172-173.
10. Heuer S, Lu X, Chin JH, Tanaka JP, Kanamori H, Matsumoto T, De Leon T, Ulat VJ, Ismail AM, Yano M, Wissuwa M (2009) Comparative sequence analyses of the major quantitative trait locus Phosphorus uptake 1 (Pup1) reveal a complex genetic structure. Plant Biotechnol J 7: 456-471.
11. Ismail AM, Heuer S, Thomson MJ, Wisswa M (2007) Genetic and genomic approaches to develop rice germplasm for problem soils. Plant Mol Biol 65(4): 547-570.
12. Li J, Xie Y, Dai A, Liu L, Li Z (2009) Root and shoot traits responses to phosphorus deficiency and QTL analysis at seedling stage using introgression lines of rice. J Genet Genomics 36: 173-183.
13. Liu WQ, Fan YY, Chen J, Shi YF, Wu JL (2009) Avoidance of linkage drag between blast resistance gene and the QTL conditioning spikelet fertility based on genotype selection against heading date in rice. Rice Sci 16(1): 21-26.
14. Londo JP, Chiang YC, Hung KH, Chiang TY, Schaal BA (2006) Phylogeography of Asian wild rice Oryza rufipogon reveals multiple independent domestications of cultivated rice Oryza sativa. Proc Natl Acad Sci USA 103(25): 9578-9583.
15. Ma J, Bennetzen JL (2004) Rapid recent growth and divergence of rice nuclear genomes. Proc Natl Acad Sci USA 101(34): 12404-12410.
16. Mackill DJ (2008) Molecular markers and marker-assisted selection in rice. In: Varshney RK, Tuberosa R (eds) Genomics assisted crop improvement, vol 2. Genomics Applications in Crops, pp 147-168.
17. Neeraja CN, Maghirang-Rodriguez R, Pamplona A, Heuer S, Collard BCY, Septiningsih EM, Vergara G, Sanchez D, Xu K, Ismail AM, Mackill DJ (2007) A marker-assisted backcross approach for developing submergence-tolerant rice cultivars. Theor Appl Genet 115: 767-776.
18. Ni JJ, Wu P, Senadhira D, Huang N (1998) Mapping QTLs for phosphorus deficiency tolerance in rice (Oryza sativa L.). Theor Appl Genet 97: 1361-1369.
19. Pallotta MA, Graham RD, Langridge P, Sparrow DHB, Barker SJ (2000) RFLP mapping of manganese efficiency in barley. Theor Appl Genet 101: 1100-1108.
20. Pariasca-Tanaka J, Satoh K, Rose T, Mauleon R, Wissuwa M (2009) Stress response versus stress tolerance: a transcriptome analysis of two rice lines contrasting in tolerance to phosphorus deficiency. Rice 2: 167-185. doi: 10. 1007/s12284-009-9032-0.
21. Reddy CS, Babu AP, Swamy PBM, Kaladhar K, Sarla N (2009) ISSR markers based on GA and AG repeats reveal genetic relationship among rice varieties tolerant to drought, flood, or salinity. J Zhejiang Univ Sci B 10(2): 133-141.
22. Ren ZH, Gao JP, Li LG, Cai XL, Huang W, Chao DY, Zhu MZ, Wang ZY, Luan S, Lin HX (2005) A rice quantitative trait locus for salt tolerance encodes a sodium transporter. Nat Genet 37: 1141-1146.
23. Rodriguez D, Goudriaan J (1995) Effect of phosphorus and drought stresses on dry matter and phosphorus allocation in wheat. J Plant Nutr 18(11): 2501-2517.
24. Septiningsih EM, Pamplona AM, Sanchez DL, Neeraja CN, Vergara GV, Heuer S, Ismail AM, Mackill DJ (2009) Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond. Ann Bot 103(2): 151-160.
25. Shimizu A, Yanagihara S, Kawasaki S, Ikehashi H (2004) Phosphorus deficiency-induced root elongation and its QTL in rice (Oryza sativa L.). Theor Appl Genet 109: 1361-1368.
26. Soriano IR, Reversat G (2003) Management of Meloidogyne graminicola and yield of upland rice in South-Luzon, Philippines. Nematology 5(6): 879-884.
27. Walia H, Wilson C, Condamine P, Liu X, Ismail AM, Zeng L, Wanamaker SI, Mandal J, Xu J, Cui X, Close TJ (2005) Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage. Plant Physiol 139: 822-835.
28. Wissuwa M (2005) Combining a modelling with a genetic approach in establishing associations between genetic and physiological effects in relation to phosphorus uptake. Plant Soil 269: 57-68.
29. Wissuwa M, Ae N (2001a) Genotypic variation for tolerance to phosphorus deficiency in rice and the potential for its exploitation in rice improvement. Plant Breed 120: 43-48.
30. Wissuwa M, Ae N (2001b) Further characterization of two QTLs that increase phosphorus uptake of rice (Oryza sativa L.) under phosphorus deficiency. Plant Soil 237: 275-286.
31. Wissuwa M, Yano M, Ae N (1998) Mapping of QTLs for phosphorus-deficiency tolerance in rice (Oryza sativa L.). Theor Appl Genet 97: 777-783.
32. Wissuwa M, Wegner J, Ae N, Yano M (2002) Substitution mapping of Pup1: a major QTL increasing phosphorus uptake of rice from a phosphorus-deficient soil. Theor Appl Genet 105: 890-897.
33. Xu Y, Crouch JH (2008) Marker-assisted selection in plant breeding: from publications to practice. Crop Sci 48: 391-407.
34. Xu K, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail AM, Bailey-Serres J, Ronald PC, Mackill DJ (2006) Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 442: 705-708.
35. Yoshida S, Forno DA, Cock JH, Gomez KA (1972) Laboratory manual for physiological studies of rice, 2nd edn. IRRI, Los Banos, pp 1-70.
36. Zhao K, Wright M, Reynolds A, Tyagi W, Kimball J, Eizenga G, McClung A, Hancock T, Wood D, Ali ML, Bustamante CD, McCouch SR (2009) A genome-wide SNP panel for genetic diversity, mapping and breeding studies in rice. In: Plant and animal genomes XVII conference, San Diego, CA, 10-14 January 2009.