메뉴 건너뛰기




Volumn 8, Issue 11, 2013, Pages

Ancestral polymorphisms and sex-biased migration shaped the demographic history of brown bears and polar bears

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL DISTRIBUTION; ANIMALS; BAYES THEOREM; CANADA; EUROPE; EVOLUTION, MOLECULAR; FEMALE; GENES, MITOCHONDRIAL; MALE; MODELS, GENETIC; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; PHYLOGEOGRAPHY; POLYMORPHISM, GENETIC; SELECTION, GENETIC; SEQUENCE ANALYSIS, DNA; SEX FACTORS; UNITED STATES; URSIDAE;

EID: 84893520844     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0078813     Document Type: Article
Times cited : (4)

References (31)
  • 1
    • 80051469138 scopus 로고    scopus 로고
    • Ancient hybridization and an Irish origin for the modern polar bear matriline
    • Edwards CJ, Suchard MA, Lemey P, Welch JJ, Barnes I, et al. (2011) Ancient hybridization and an Irish origin for the modern polar bear matriline. Curr Biol 21: 1251-1258.
    • (2011) Curr Biol , vol.21 , pp. 1251-1258
    • Edwards, C.J.1    Suchard, M.A.2    Lemey, P.3    Welch, J.J.4    Barnes, I.5
  • 2
    • 0030162288 scopus 로고    scopus 로고
    • Phylogeography of brown bears (Ursus arctos) of Alaska and paraphyly within the Ursidae
    • DOI 10.1006/mpev.1996.0044
    • Talbot SL, Shields GF (1996) Phylogeography of brown bears (Ursus arctos) of Alaska and paraphyly within the Ursidae. Mol Phylogenet Evol 5: 477-494. (Pubitemid 126320895)
    • (1996) Molecular Phylogenetics and Evolution , vol.5 , Issue.3 , pp. 477-494
    • Talbot, S.L.1    Shields, G.F.2
  • 3
    • 84859994581 scopus 로고    scopus 로고
    • Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage
    • Hailer F, Kutschera VE, Hallstrom BM, Klassert D, Fain SR, et al. (2012) Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage. Science 336: 344-347.
    • (2012) Science , vol.336 , pp. 344-347
    • Hailer, F.1    Kutschera, V.E.2    Hallstrom, B.M.3    Klassert, D.4    Fain, S.R.5
  • 4
    • 84865964725 scopus 로고    scopus 로고
    • Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change
    • Miller W, Schuster SC, Welch AJ, Ratan A, Bedoya-Reina OC, et al. (2012) Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change. Proc Natl Acad Sci U S A 109: E2382-2390.
    • (2012) Proc Natl Acad Sci U S A , vol.109
    • Miller, W.1    Schuster, S.C.2    Welch, A.J.3    Ratan, A.4    Bedoya-Reina, O.C.5
  • 5
    • 84875501326 scopus 로고    scopus 로고
    • Comment on "Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage"
    • Nakagome S, Mano S, Hasegawa M (2013) Comment on "Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage". Science 339: 1522.
    • (2013) Science , vol.339 , pp. 1522
    • Nakagome, S.1    Mano, S.2    Hasegawa, M.3
  • 6
    • 0002556819 scopus 로고
    • On the genealogy of large populations
    • Kingman JFC (1982) On the genealogy of large populations. J Appl Prob 19A: 27-43.
    • (1982) J Appl Prob , vol.19 A , pp. 27-43
    • Kingman, J.F.C.1
  • 7
    • 65649131928 scopus 로고    scopus 로고
    • Gene tree discordance, phylogenetic inference and the multispecies coalescent
    • Degnan JH, Rosenberg NA (2009) Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol Evol 24: 332-340.
    • (2009) Trends Ecol Evol , vol.24 , pp. 332-340
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 8
    • 0034879361 scopus 로고    scopus 로고
    • Natal dispersal of grizzly bears
    • DOI 10.1139/cjz-79-5-838
    • McLellan BN, Hovey FW (2001) Natal dispersal of grizzly bears. Canadian Journal of Zoology-Revue Canadienne De Zoologie 79: 838-844. (Pubitemid 32752546)
    • (2001) Canadian Journal of Zoology , vol.79 , Issue.5 , pp. 838-844
    • McLellan, B.N.1    Hovey, F.W.2
  • 10
    • 45849091424 scopus 로고    scopus 로고
    • Unequal rates of Y chromosome gene divergence during speciation of the family Ursidae
    • DOI 10.1093/molbev/msn086
    • Nakagome S, Pecon-Slattery J, Masuda R (2008) Unequal rates of Y chromosome gene divergence during speciation of the family Ursidae. Mol Biol Evol 25: 1344-1356. (Pubitemid 351882016)
    • (2008) Molecular Biology and Evolution , vol.25 , Issue.7 , pp. 1344-1356
    • Nakagome, S.1    Pecon-Slattery, J.2    Masuda, R.3
  • 11
    • 75149155568 scopus 로고    scopus 로고
    • The sequence and de novo assembly of the giant panda genome
    • Li R, Fan W, Tian G, Zhu H, He L, et al. (2010) The sequence and de novo assembly of the giant panda genome. Nature 463: 311-317.
    • (2010) Nature , vol.463 , pp. 311-317
    • Li, R.1    Fan, W.2    Tian, G.3    Zhu, H.4    He, L.5
  • 12
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 13
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson RR, Kaplan NL (1985) Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164. (Pubitemid 16248827)
    • (1985) Genetics , vol.111 , Issue.1 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 14
    • 84872206570 scopus 로고    scopus 로고
    • version 9.0. Accessed 2012 Feb 12
    • Griffiths RC (2007) GENETREE version 9.0. http://wwwstatsoxacuk/~griff/ software.html Accessed 2012 Feb 12.
    • (2007) GENETREE
    • Griffiths, R.C.1
  • 15
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson GA (1975) On the number of segregating sites in genetical models without recombination. Theor Popul Biol 7: 256-276.
    • (1975) Theor Popul Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 17
    • 85162423079 scopus 로고    scopus 로고
    • Kernel Bayes' rule
    • edited by J Shawe-Taylor and RS Zemel and P Bartlett and F Pereira and KQ Weinberger
    • Fukumizu K, Song L, Gretton A (2011) Kernel Bayes' rule. Advances in Neural Information Processing Systems 24 edited by J Shawe-Taylor and RS Zemel and P Bartlett and F Pereira and KQ Weinberger: 1549-1557.
    • (2011) Advances in Neural Information Processing Systems , vol.24 , pp. 1549-1557
    • Fukumizu, K.1    Song, L.2    Gretton, A.3
  • 18
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • DOI 10.1073/pnas.76.10.5269
    • Nei M, Li WH (1979) Mathematical-Model for Studying Genetic-Variation in Terms of Restriction Endonucleases. Proceedings of the National Academy of Sciences of the United States of America 76: 5269-5273. (Pubitemid 10236121)
    • (1979) Proceedings of the National Academy of Sciences of the United States of America , vol.76 , Issue.10 , pp. 5269-5273
    • Nei, M.1    Li, W.H.2
  • 19
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 20
    • 50049087042 scopus 로고    scopus 로고
    • Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary
    • Krause J, Unger T, Nocon A, Malaspinas AS, Kolokotronis SO, et al. (2008) Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. BMC Evol Biol 8: 220.
    • (2008) BMC Evol Biol , vol.8 , pp. 220
    • Krause, J.1    Unger, T.2    Nocon, A.3    Malaspinas, A.S.4    Kolokotronis, S.O.5
  • 21
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson RR (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 24
    • 0021716351 scopus 로고
    • Estimation of evolutionary distance between nucleotide sequences
    • Tajima F, Nei M (1984) Estimation of evolutionary distance between nucleotide sequences. Mol Biol Evol 1: 269-285. (Pubitemid 15218644)
    • (1984) Molecular Biology and Evolution , vol.1 , Issue.3 , pp. 269-285
    • Tajima, F.1    Nei, M.2
  • 25
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu YX, Li WH (1993) Statistical tests of neutrality of mutations. Genetics 133: 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 26
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay JC, Wu CI (2000) Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413. (Pubitemid 30463447)
    • (2000) Genetics , vol.155 , Issue.3 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.-I.2
  • 27
    • 0029909630 scopus 로고    scopus 로고
    • Effective sizes and dynamics of uniparentally and diparentally inherited genes
    • Chesser RK, Baker RJ (1996) Effective sizes and dynamics of uniparentally and diparentally inherited genes. Genetics 144: 1225-1235. (Pubitemid 26378262)
    • (1996) Genetics , vol.144 , Issue.3 , pp. 1225-1235
    • Chesser, R.K.1    Baker, R.J.2
  • 28
    • 0036742524 scopus 로고    scopus 로고
    • Effective population size and population subdivision in demographically structured populations
    • Laporte V, Charlesworth B (2002) Effective population size and population subdivision in demographically structured populations. Genetics 162: 501-519.
    • (2002) Genetics , vol.162 , pp. 501-519
    • Laporte, V.1    Charlesworth, B.2
  • 29
    • 77950400446 scopus 로고    scopus 로고
    • Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear
    • Lindqvist C, Schuster SC, Sun Y, Talbot SL, Qi J, et al. (2010) Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear. Proc Natl Acad Sci U S A 107: 5053-5057.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 5053-5057
    • Lindqvist, C.1    Schuster, S.C.2    Sun, Y.3    Talbot, S.L.4    Qi, J.5
  • 30
    • 0034863508 scopus 로고    scopus 로고
    • Human mtDNA and Y-chromosome variation is correlated with matrilocal versus patrilocal residence
    • DOI 10.1038/ng711
    • Oota H, Settheetham-Ishida W, Tiwawech D, Ishida T, Stoneking M (2001) Human mtDNA and Y-chromosome variation is correlated with matrilocal versus patrilocal residence. Nat Genet 29: 20-21. (Pubitemid 32801801)
    • (2001) Nature Genetics , vol.29 , Issue.1 , pp. 20-21
    • Oota, H.1    Settheetham-Ishida, W.2    Tiwawech, D.3    Ishida, T.4    Stoneking, M.5
  • 31
    • 77953086802 scopus 로고    scopus 로고
    • Can a sex-biased human demography account for the reduced effective population size of chromosome X in non-Africans?
    • Keinan A, Reich D (2010) Can a sex-biased human demography account for the reduced effective population size of chromosome X in non-Africans? Mol Biol Evol 27: 2312-2321.
    • (2010) Mol Biol Evol , vol.27 , pp. 2312-2321
    • Keinan, A.1    Reich, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.