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Volumn 118, Issue 4, 2014, Pages 951-965

Photochemical reaction mechanism of UV-B-induced monomerization of UVR8 dimers as the first signaling event in UV-B-regulated gene expression in plants

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CHEMICAL BONDS; FREE RADICAL REACTIONS; GENE EXPRESSION; IRRADIATION; MOLECULAR DYNAMICS; MONOMERS; PHOTOCHEMICAL REACTIONS; PROTEINS; QUANTUM CHEMISTRY;

EID: 84893504425     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp4104118     Document Type: Article
Times cited : (26)

References (53)
  • 1
    • 50849146117 scopus 로고
    • Target Sites of UV-B Radiation in Photosynthesis of Higher Plants
    • Bornman, J. F. Target Sites of UV-B Radiation in Photosynthesis of Higher Plants J. Photochem. Photobiol. B: Biol. 1989, 4, 145-158
    • (1989) J. Photochem. Photobiol. B: Biol. , vol.4 , pp. 145-158
    • Bornman, J.F.1
  • 2
    • 0001130048 scopus 로고
    • UV-B Damage and Protection at the Molecular Level in Plants
    • Strid, Å.; Chow, W. S.; Anderson, J. M. UV-B Damage and Protection at the Molecular Level in Plants Photosynth. Res. 1994, 39, 475-489
    • (1994) Photosynth. Res. , vol.39 , pp. 475-489
    • Strid, Å.1    Chow, W.S.2    Anderson, J.M.3
  • 3
    • 81555200690 scopus 로고    scopus 로고
    • Theoretical Study of Pyridoxine (Vitamin B6) Photolysis
    • Wu, M.; Xu, Q.; Strid, Å.; Martell, J. M.; Eriksson, L. A. Theoretical Study of Pyridoxine (Vitamin B6) Photolysis J. Phys. Chem. A 2011, 115, 13556-13563
    • (2011) J. Phys. Chem. A , vol.115 , pp. 13556-13563
    • Wu, M.1    Xu, Q.2    Strid, Å.3    Martell, J.M.4    Eriksson, L.A.5
  • 4
    • 0030905419 scopus 로고    scopus 로고
    • UV-B-Induced Synthesis of Photoprotective Pigments and Extracellular Polysaccharides in the Terrestrial Cyanobacterium Nostoc Commune
    • Ehling-Schulz, M.; Bilger, W.; Scherer, S. UV-B-Induced Synthesis of Photoprotective Pigments and Extracellular Polysaccharides in the Terrestrial Cyanobacterium Nostoc Commune J. Bacteriol. 1997, 179, 1940-5
    • (1997) J. Bacteriol. , vol.179 , pp. 1940-1945
    • Ehling-Schulz, M.1    Bilger, W.2    Scherer, S.3
  • 5
    • 84873104912 scopus 로고    scopus 로고
    • UV-B Exposure, ROS and Stress: Inseparable Companions or Loosely Linked Associates?
    • Hideg, é.; Jansen, M. A. K.; Strid, Å. UV-B Exposure, ROS and Stress: Inseparable Companions or Loosely Linked Associates? Trends Plant Sci. 2012, 18, 107-115
    • (2012) Trends Plant Sci. , vol.18 , pp. 107-115
    • Hideg, E.1    Jansen, M.A.K.2    Strid, Å.3
  • 9
    • 84859646883 scopus 로고    scopus 로고
    • UV-B Photoreceptor-Mediated Signalling in Plants
    • Heijde, M.; Ulm, R. UV-B Photoreceptor-Mediated Signalling in Plants Trends Plant Sci. 2012, 17, 230-237
    • (2012) Trends Plant Sci. , vol.17 , pp. 230-237
    • Heijde, M.1    Ulm, R.2
  • 10
    • 66449126361 scopus 로고    scopus 로고
    • Signal Transduction in Responses to UV-B Radiation
    • Jenkins, G. I. Signal Transduction in Responses to UV-B Radiation Annu. Rev. Plant Biol. 2009, 60, 407-31
    • (2009) Annu. Rev. Plant Biol. , vol.60 , pp. 407-431
    • Jenkins, G.I.1
  • 12
    • 38949188735 scopus 로고    scopus 로고
    • UV-B Signaling Pathways with Different Fluence-Rate Response Profiles are Distinguished in Mature Arabidopsis Leaf Tissue by Requirement for UVR8, HY5, and HYH
    • Brown, B. A.; Jenkins, G. I. UV-B Signaling Pathways with Different Fluence-Rate Response Profiles are Distinguished in Mature Arabidopsis Leaf Tissue by Requirement for UVR8, HY5, and HYH Plant Physiol. 2008, 146, 576-588
    • (2008) Plant Physiol. , vol.146 , pp. 576-588
    • Brown, B.A.1    Jenkins, G.I.2
  • 14
    • 35348841586 scopus 로고    scopus 로고
    • UV-B Promotes Rapid Nuclear Translocation of the Arabidopsis UV-B Specific Signaling Component UVR8 and Activates its Function in the Nucleus
    • Kaiserli, E.; Jenkins, G. I. UV-B Promotes Rapid Nuclear Translocation of the Arabidopsis UV-B Specific Signaling Component UVR8 and Activates its Function in the Nucleus Plant Cell 2007, 19, 2662-2673
    • (2007) Plant Cell , vol.19 , pp. 2662-2673
    • Kaiserli, E.1    Jenkins, G.I.2
  • 16
    • 69649088670 scopus 로고    scopus 로고
    • UV-B Action Spectrum for UVR8-Mediated HY5 Transcript Accumulation in Arabidopsis
    • Brown, B. A.; Headland, L. R.; Jenkins, G. I. UV-B Action Spectrum for UVR8-Mediated HY5 Transcript Accumulation in Arabidopsis Photochem. Photobiol. 2009, 85, 1147-1155
    • (2009) Photochem. Photobiol. , vol.85 , pp. 1147-1155
    • Brown, B.A.1    Headland, L.R.2    Jenkins, G.I.3
  • 17
    • 84871751252 scopus 로고    scopus 로고
    • Rapid Reversion from Monomer to Dimer Regenerates the Ultraviolet-B Photoreceptor UV RESISTANCE LOCUS8 in Intact Arabidopsis Plants
    • Heilmann, M.; Jenkins, G. I. Rapid Reversion from Monomer to Dimer Regenerates the Ultraviolet-B Photoreceptor UV RESISTANCE LOCUS8 in Intact Arabidopsis Plants Plant Physiol. 2013, 161, 547-55
    • (2013) Plant Physiol. , vol.161 , pp. 547-555
    • Heilmann, M.1    Jenkins, G.I.2
  • 18
    • 79959769246 scopus 로고    scopus 로고
    • Computational Evidence for the Role of Arabidopsis Thaliana UVR8 as UV-B Photoreceptor and Identificantion of its Chromophore Amino Acids
    • Wu, M.; Grahn, E.; Eriksson, L. A.; Strid, Å. Computational Evidence for the Role of Arabidopsis Thaliana UVR8 as UV-B Photoreceptor and Identificantion of its Chromophore Amino Acids J. Chem. Inf. Model 2011, 51, 1287-1285
    • (2011) J. Chem. Inf. Model , vol.51 , pp. 1287-1285
    • Wu, M.1    Grahn, E.2    Eriksson, L.A.3    Strid, Å.4
  • 19
    • 0034214080 scopus 로고    scopus 로고
    • Intraprotein Radical Transfer during Photoactivation of DNA Photolyase
    • Aubert, C.; Vos, M. H.; Mathis, P.; Eker, A. P.; Brettel, K. Intraprotein Radical Transfer During Photoactivation of DNA Photolyase Nature 2000, 405, 586-590
    • (2000) Nature , vol.405 , pp. 586-590
    • Aubert, C.1    Vos, M.H.2    Mathis, P.3    Eker, A.P.4    Brettel, K.5
  • 20
    • 0038208381 scopus 로고    scopus 로고
    • Radical Initiation in the Class i Ribonucleotide Reductase: Long-Range Proton-Coupled Electron Transfer?
    • Stubbe, J.; Nocera, D. G.; Yee, C. S.; Chang, M. C. Radical Initiation in the Class I Ribonucleotide Reductase: Long-Range Proton-Coupled Electron Transfer? Chem. Rev. 2003, 103, 2167-2201
    • (2003) Chem. Rev. , vol.103 , pp. 2167-2201
    • Stubbe, J.1    Nocera, D.G.2    Yee, C.S.3    Chang, M.C.4
  • 21
    • 61749091925 scopus 로고    scopus 로고
    • Resonance Raman Characterization of a Stable Tryptophan Radical in an Azurin Mutant
    • Shafaat, H. S.; Leigh, B. S.; Tauber, M. J.; Kim, J. E. Resonance Raman Characterization of a Stable Tryptophan Radical in an Azurin Mutant J. Phys. Chem. B 2009, 113, 382-388
    • (2009) J. Phys. Chem. B , vol.113 , pp. 382-388
    • Shafaat, H.S.1    Leigh, B.S.2    Tauber, M.J.3    Kim, J.E.4
  • 22
    • 35348841586 scopus 로고    scopus 로고
    • UV-B Promotes Rapid Nuclear Translocation of the Arabidopsis UV-B Specific Signaling Component UVR8 and Activates its Function in the Nucleus
    • Kaiserli, E.; Jenkins, G. I. UV-B Promotes Rapid Nuclear Translocation of the Arabidopsis UV-B Specific Signaling Component UVR8 and Activates its Function in the Nucleus Plant Cell 2007, 19, 2662-2673
    • (2007) Plant Cell , vol.19 , pp. 2662-2673
    • Kaiserli, E.1    Jenkins, G.I.2
  • 24
    • 27744474619 scopus 로고    scopus 로고
    • COP1 - From Plant Photomorphogenesis to Mammalian Tumorigenesis
    • Yi, C.; Deng, X. W. COP1-from Plant Photomorphogenesis to Mammalian Tumorigenesis Trends Cell Biol. 2005, 15, 618-625
    • (2005) Trends Cell Biol. , vol.15 , pp. 618-625
    • Yi, C.1    Deng, X.W.2
  • 26
    • 84877088330 scopus 로고    scopus 로고
    • Theoretical Prediction of the Protein-Protein Interaction between Arabidopsis Thaliana COP1 and UVR8
    • Wu, M.; Eriksson, L. A.; Strid, Å. Theoretical Prediction of the Protein-Protein Interaction between Arabidopsis Thaliana COP1 and UVR8 Theor. Chem. Acc. 2013, 132, 11
    • (2013) Theor. Chem. Acc. , vol.132 , pp. 11
    • Wu, M.1    Eriksson, L.A.2    Strid, Å.3
  • 27
    • 84868159269 scopus 로고    scopus 로고
    • In Vivo Function of Tryptophans in the Arabidopsis UV-B Photoreceptor UVR8
    • O'Hara, A.; Jenkins, G. I. In Vivo Function of Tryptophans in the Arabidopsis UV-B Photoreceptor UVR8 Plant Cell 2012, 24, 3755-3766
    • (2012) Plant Cell , vol.24 , pp. 3755-3766
    • O'Hara, A.1    Jenkins, G.I.2
  • 28
    • 84880534992 scopus 로고    scopus 로고
    • Interactions and Stabilities of the UV RESISTANCE LOCUS8 (UVR8) Protein Dimer and its key Mutants
    • Wu, M.; Strid, Å.; Eriksson, L. A. Interactions and Stabilities of the UV RESISTANCE LOCUS8 (UVR8) Protein Dimer and its key Mutants J. Chem. Inf. Model 2013, 53, 1736-1746
    • (2013) J. Chem. Inf. Model , vol.53 , pp. 1736-1746
    • Wu, M.1    Strid, Å.2    Eriksson, L.A.3
  • 29
    • 84855757480 scopus 로고    scopus 로고
    • version 2011.10; Chemical Computing Group Inc. Montreal, Canada.
    • Molecular Operating Enviroment, version 2011.10; Chemical Computing Group Inc.: Montreal, Canada, 2011.
    • (2011) Molecular Operating Enviroment
  • 30
    • 0000189651 scopus 로고
    • Density-Functional Thermochemistry. III. The Role of Exact Exchange
    • Becke, A. D. Density-Functional Thermochemistry. III. The Role of Exact Exchange J. Chem. Phys. 1993, 98, 5648-5652
    • (1993) J. Chem. Phys. , vol.98 , pp. 5648-5652
    • Becke, A.D.1
  • 31
    • 33751157732 scopus 로고
    • Ab Initio Calculations of Vibrational Absorption and Circular Dichroism Spectra using Density Functional Force Fields
    • Stephens, P. J.; Devlin, F. J.; Chabalowski, C. F.; Frisch, M. J. Ab Initio Calculations of Vibrational Absorption and Circular Dichroism Spectra using Density Functional Force Fields J. Chem. Phys. 1994, 98, 11623-11627
    • (1994) J. Chem. Phys. , vol.98 , pp. 11623-11627
    • Stephens, P.J.1    Devlin, F.J.2    Chabalowski, C.F.3    Frisch, M.J.4
  • 32
    • 78651064594 scopus 로고    scopus 로고
    • Mechanism of Tungsten-Dependent Acetylene Hydratase from Quantum Chemical Calculations
    • Liao, R. Z.; Yu, J. G.; Himo, F. Mechanism of Tungsten-Dependent Acetylene Hydratase from Quantum Chemical Calculations Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 22523-22527
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 22523-22527
    • Liao, R.Z.1    Yu, J.G.2    Himo, F.3
  • 33
    • 55849117399 scopus 로고    scopus 로고
    • Long-Range Corrected Hybrid Density Functionals with Damped Atom-Atom Dispersion Corrections
    • Chai, J. D.; Head-Gordon, M. Long-Range Corrected Hybrid Density Functionals with Damped Atom-Atom Dispersion Corrections Phys. Chem. Chem. Phys. 2008, 10, 6615-6620
    • (2008) Phys. Chem. Chem. Phys. , vol.10 , pp. 6615-6620
    • Chai, J.D.1    Head-Gordon, M.2
  • 34
    • 40149109196 scopus 로고    scopus 로고
    • Systematic Optimization of Long-Range Corrected Hybrid Density Functionals
    • Chai, J. D.; Head-Gordon, M. Systematic Optimization of Long-Range Corrected Hybrid Density Functionals J. Chem. Phys. 2008, 128, 084106
    • (2008) J. Chem. Phys. , vol.128 , pp. 084106
    • Chai, J.D.1    Head-Gordon, M.2
  • 35
    • 79251642266 scopus 로고    scopus 로고
    • Can Range-Separated and Hybrid DFT Functionals Predict Low-Lying Excitations? A Tookad Case Study
    • Tian, B. X.; Eriksson, E. S. E.; Eriksson, L. A. Can Range-Separated and Hybrid DFT Functionals Predict Low-Lying Excitations? A Tookad Case Study J. Chem. Theory Comput. 2010, 6, 2086-2094
    • (2010) J. Chem. Theory Comput. , vol.6 , pp. 2086-2094
    • Tian, B.X.1    Eriksson, E.S.E.2    Eriksson, L.A.3
  • 38
    • 46249092554 scopus 로고    scopus 로고
    • Gromacs 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
    • Hess, B.; Kutzner, C.; Van der Spoel, D.; Lindahl, E. Gromacs 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation J. Chem. Theory Comput. 2008, 4, 435-447
    • (2008) J. Chem. Theory Comput. , vol.4 , pp. 435-447
    • Hess, B.1    Kutzner, C.2    Van Der Spoel, D.3    Lindahl, E.4
  • 39
    • 84893476066 scopus 로고    scopus 로고
    • (accessed date May 27)
    • GROMACS. http//www. gromacs.org/ (accessed date May 27 2013)
    • (2013) GROMACS
  • 40
    • 0242663237 scopus 로고    scopus 로고
    • Point-Charge Force Field for Molecular Mechanics Simulations of Proteins Based on Condensed-Phase Quantum Mechanical Calculations
    • Duan, Y.; Wu, C.; Chowdhury, S.; Lee, M. C.; Xiong, G.; Zhang, W.; Yang, R.; Cieplak, P.; Luo, R.; Lee, T. Point-Charge Force Field for Molecular Mechanics Simulations of Proteins Based on Condensed-Phase Quantum Mechanical Calculations J. Comput. Chem. 2003, 24, 1999-2012
    • (2003) J. Comput. Chem. , vol.24 , pp. 1999-2012
    • Duan, Y.1    Wu, C.2    Chowdhury, S.3    Lee, M.C.4    Xiong, G.5    Zhang, W.6    Yang, R.7    Cieplak, P.8    Luo, R.9    Lee, T.10
  • 42
    • 84884814598 scopus 로고    scopus 로고
    • Development of Nonstandard Arginine Residue Parameters for Use with the Amber Force Field
    • Wu, M.; Eriksson, L. A.; Strid, Å. Development of Nonstandard Arginine Residue Parameters for Use with the Amber Force Field Chem. Phys. Lett. 2013, 584, 188-194
    • (2013) Chem. Phys. Lett. , vol.584 , pp. 188-194
    • Wu, M.1    Eriksson, L.A.2    Strid, Å.3
  • 43
    • 33846823909 scopus 로고
    • Particle Mesh Ewald: An N-log(N) Method for Ewald Sums in Large Systems
    • Darden, T.; York, D.; Pedersen, L. Particle Mesh Ewald: An N-log(N) Method for Ewald Sums in Large Systems J. Chem. Phys. 1993, 98, 10089-10092
    • (1993) J. Chem. Phys. , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 46
    • 0001538909 scopus 로고
    • Canonical Dynamics: Equilibrium Phase-Space Distributions
    • Hoover, W. G. Canonical Dynamics: Equilibrium Phase-Space Distributions Phys. Rev. A 1985, 31, 1695-1697
    • (1985) Phys. Rev. A , vol.31 , pp. 1695-1697
    • Hoover, W.G.1
  • 47
    • 34547809547 scopus 로고
    • A Unified Formulation of the Constant Temperature Molecular Dynamics Methods
    • Nosé, S. J. A Unified Formulation of the Constant Temperature Molecular Dynamics Methods J. Chem. Phys. 1984, 81, 511-519
    • (1984) J. Chem. Phys. , vol.81 , pp. 511-519
    • Nosé, S.J.1
  • 48
    • 0000397037 scopus 로고
    • A Study of Solid and Liquid Carbon Tetrafluoride using the Constant Pressure Molecular Dynamics Technique
    • Nosé, S.; Klein, M. L. A Study of Solid and Liquid Carbon Tetrafluoride using the Constant Pressure Molecular Dynamics Technique J. Chem. Phys. 1983, 78, 6928-6939
    • (1983) J. Chem. Phys. , vol.78 , pp. 6928-6939
    • Nosé, S.1    Klein, M.L.2
  • 49
    • 0019707626 scopus 로고
    • Polymorphic Transitions in Single Crystals: A New Molecular Dynamics Method
    • Parrinello, M.; Rahman, A. Polymorphic Transitions in Single Crystals: A New Molecular Dynamics Method J. Appl. Phys. 1981, 52, 7182-7190
    • (1981) J. Appl. Phys. , vol.52 , pp. 7182-7190
    • Parrinello, M.1    Rahman, A.2
  • 50
    • 17144385534 scopus 로고    scopus 로고
    • Virtual Screening Workflow Development Guided by the "receiver Operating Characteristic" Curve Approach. Application to High-Throughput Docking on Metabotropic Glutamate Receptor Subtype 4
    • Triballeau, N.; Acher, F.; Brabet, I.; Pin, J. P.; Bertrand, H. O. Virtual Screening Workflow Development Guided by the "Receiver Operating Characteristic" Curve Approach. Application to High-Throughput Docking on Metabotropic Glutamate Receptor Subtype 4 J. Med. Chem. 2005, 48, 2534-2547
    • (2005) J. Med. Chem. , vol.48 , pp. 2534-2547
    • Triballeau, N.1    Acher, F.2    Brabet, I.3    Pin, J.P.4    Bertrand, H.O.5
  • 51
    • 33845190850 scopus 로고    scopus 로고
    • Isotopic Effects in the Electronic Spectra of Tryptophan
    • Yu, A. Z.; Yu, A. B.; Dadayan, A. K.; Myasoedov, N. F. Isotopic Effects in the Electronic Spectra of Tryptophan Amino Acids 2006, 31, 403-407
    • (2006) Amino Acids , vol.31 , pp. 403-407
    • Yu, A.Z.1    Yu, A.B.2    Dadayan, A.K.3    Myasoedov, N.F.4
  • 53
    • 84893487100 scopus 로고    scopus 로고
    • (accessed May 27).
    • YASARA. http//www.yasara.org (accessed May 27, 2013).
    • (2013) YASARA


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