Characterization of a canine tetranucleotide microsatellite marker located in the first intron of the tumor necrosis factor alpha gene

Journal of Veterinary Medical Science

Volumn 76, Issue 1, 2014, Pages 119-122

  Watanabe, Masashi ^a   Tanaka, Kazuaki ^a   Takizawa, Tatsuya ^a   Segawa, Kazuhito ^a   Neo, Sakurako ^a   Tsuchiya, Ryo ^a   Murata, Michiko ^a   Murakami, Masaru ^a   Hisasue, Masaharu ^a  

^a AZABU UNIVERSITY   (Japan)

Author keywords

Canine TNFA gene; Tetranucleotide microsatellite

Indexed keywords

DNA; MICROSATELLITE DNA; TUMOR NECROSIS FACTOR ALPHA;

ANIMAL; ANIMAL DISEASE; CHEMISTRY; DNA SEQUENCE; DOG; GENETICS; INTRON; MOLECULAR GENETICS; NOTE; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; BASE SEQUENCE; DNA; DOGS; INTRONS; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TUMOR NECROSIS FACTOR-ALPHA;

EID: 84893503897     PISSN: 09167250     EISSN: 13477439     Source Type: Journal    
DOI: 10.1292/jvms.13-0316     Document Type: Note

References (19)

1. Aoki, T., Koch, K. S. and Leffert, H. L. 1997. Attenuation of gene expression by a trinucleotide repeat-rich tract from the terminal exon of the rat hepatic polymeric immunoglobulin receptor gene. J. Mol. Biol. 267: 229-236. [Medline] [CrossRef]
2. Botstein, D., White, R. L., Skolnick, M. and Davis, R. W. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32: 314-331. [Medline]
3. Buranawuti, K., Boyle, M. P., Cheng, S., Steiner, L. L., McDougal, K., Fallin, M. D., Merlo, C., Zeitlin, P. L., Rosenstein, B. J., Mogayzel, P. J. Jr., Wang, X. and Cutting, G. R. 2007. Variants in mannose-binding lectin and tumour necrosis factor alpha affect survival in cystic fibrosis. J. Med. Genet. 44: 209-214. [Medline] [CrossRef]
4. Excoffier, L., Laval, G. and Schneider, S. 2005. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50.
5. Gardezi, A. Z., Ziaei, Y. Z. and Marashi, S. M. 2008. Microsatellite polymorphism of the human leptin gene and risk of obesity. J. Crit. Care 23: 440-444. [Medline] [CrossRef]
6. Guedes, P. M., Veloso, V. M., Afonso, L. C., Caliari, M. V., Carneiro, C. M., Diniz, L. F., Marques-da-Silva, E. A., Caldas, I. S., Do Valle Matta, M. A., Souza, S. M., Lana, M., Chiari, E., Galvão, L. M. and Bahia, M. T. 2009. Development of chronic cardiomyopathy in canine Chagas disease correlates with high IFN-gamma, TNF-alpha, and low IL-10 production during the acute infection phase. Vet. Immunol. Immunopathol. 130: 43-52. [Medline] [CrossRef]
7. Hearne, C. M., Ghosh, S. and Todd, J. A. 1992. Microsatellites for linkage analysis of genetic traits. Trends Genet. 8: 288-294. [Medline]
8. Ishii, T., Hirose, H., Saito, I., Nishikai, K., Maruyama, H. and Saruta, T. 2000. Tumor necrosis factor alpha gene G-308A polymorphism, insulin resistance, and fasting plasma glucose in young, older, and diabetic Japanese men. Metabolism 49: 1616-1618. [Medline] [CrossRef]
9. Kashi, Y., King, D. and Soller, M. 1997. Simple sequence repeats as a source of quantitative genetic variation. Trends Genet. 13: 74-78. [Medline] [CrossRef]
10. Klesert, T. R., Otten, A. D., Bird, T. D. and Tapscott, S. J. 1997. Trinucleotide repeat expansion at the myotonic dystrophy locus reduces expression of DMAHP. Nature Genet. 16: 402-406. [Medline] [CrossRef]
11. Koss, K., Satsangi, J., Fanning, G. C., Welsh, K. I. and Jewell, D. P. 2000. Cytokine (TNF-alpha, LT-alpha, and IL-10) polymorphisms in inflammatory bowel diseases and normal controls: differential effects on production and allele frequencies. Genes Immun. 1: 185-190. [Medline] [CrossRef]
12. Meloni, R., Albanèse, V., Ravassard, P., Treilhou, F. and Mallet, J. 1998. A tetranucleotide polymorphic microsatellite, located in the first intron of the tyrosine hydroxylase gene, acts as a transcription regulatory element in vitro. Hum. Mol. Genet. 7: 423-428. [Medline] [CrossRef]
13. Menezes-Souza, D., Corrêa-Oliveira, R., Guerra-Sá, R., Giunchetti, R. C., Teixeira-Carvalho, A., Martins-Filho, O. A., Oliveira, G. C. and Reis, A. B. 2011. Cytokine and transcription factor profiles in the skin of dogs naturally infected by Leishmania (Leishmania) chagasi presenting distinct cutaneous parasite density and clinical status. Vet. Parasitol. 177: 39-49. [Medline] [CrossRef]
14. Mira, J.P., Cariou, A., Grall, F., Delclaux, C., Losser, M.R., Heshmati, F., Cheval, C., Monchi, M., Teboul, J.L., Riche, F., Leleu, G., Arbibe, L., Mignon, A., Delpech, M. and Dhainaut, J.F. 1999. Association of TNF2, a TNF-alpha promoter polymorphism, with septic shock susceptibility and mortality: a multicenter study. JAMA 282: 561-568. [Medline] [CrossRef]
15. Mulcahy, B., Waldron-Lynch, F., McDermott, M. F., Adams, C., Amos, C. I., Zhu, D. K., Ward, R. H., Clegg, D. O., Shanahan, F., Molloy, M. G. and O'Gara, F. 1996. Genetic variability in the tumor necrosis factor-lymphotoxin region influences susceptibility to rheumatoid arthritis. Am. J. Hum. Genet. 59: 676-683. [Medline]
16. Ridyard, A. E., Nuttall, T. J., Else, R. W., Simpson, J. W. and Miller, H. R. P. 2002. Evaluation of Th1, Th2 and immunosuppressive cytokine mRNA expression within the colonic mucosa of dogs with idiopathic lymphocytic-plasmacytic colitis. Vet. Immunol. Immunopathol. 86: 205-214. [Medline] [CrossRef]
17. Song, R., Kim, J., Yu, D., Park, C. and Park, J. 2012. Kinetics of IL-6 and TNF-α changes in a canine model of sepsis induced by endotoxin. Vet. Immunol. Immunopathol. 146: 143-149. [Medline] [CrossRef]
18. Weber, J. L. and May, P. E. 1989. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44: 388-396. [Medline]
19. Wei, J., Ramchand, C. N. and Hemmings, G. P. 1995. Association of polymorphic VNTR region in the first intron of the human TH gene with disturbances of the catecholamine pathway in schizophrenia. Psychiatr. Genet. 5: 83-88. [Medline] [CrossRef]