Agreements and misunderstandings among three scientific fields: Paleogenomics, archaeology, and human paleontology

Current Anthropology

Volumn 54, Issue SUPPL8., 2013, Pages

  Lalueza Fox, Carles ^a  

^a CSIC   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84893303176     PISSN: 00113204     EISSN: None     Source Type: Journal    
DOI: 10.1086/673387     Document Type: Conference Paper

References (33)

1. Abi-Rached, Laurent, Matthew J. Jobin, Subhash Kulkarni, Alasdair Mc-Whinnie, Klara Dalva, Loren Gragert, Farbod Babrzadeh, et al. 2011. The shaping of modern human immune systems by multiregional admixture with archaic humans. Science 334(6052):89-94.
2. Aiello, Leslie C., and Christopher M. Dean. 1990. The microanatomy and development of teeth. In An introduction to human evolutionary anatomy. Pp. 106-132. London: Academic Press.
3. Balloux, François. 2010. Mitochondrial phylogeography: the worm in the fruit of the mitochondrial DNA tree. Heredity 104:419-420.
4. Barbujani, Guido, Giorgio Bertorelle, and Lounès Chikhi. 1998. Evidence for Paleolithic and Neolithic gene flow in Europe. American Journal of Human Genetics 62(2):488-491.
5. Briggs, Adrian W., Jeffrey M. Good, Richard E. Green, Johannes Krause, Tomislav Maricic, Udo Stenzel, Carles Lalueza-Fox, et al. 2009. Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science 325:318-321.
6. Briggs, Adrian W., Udo Stenzel, Philip L. F. Johnson, Richard E. Green, Janet Kelso, Kay Prufer, Matthias Meyer, et al. 2007. Patterns of damage in genomic DNA sequences from a Neandertal. Proceedings of the National Academy of Sciences of the USA 104(37):14616-14621.
7. Burbano, Hernán A., Emily Hodges, Richard E. Green, Adrian W. Briggs, Johannes Krause, Matthias Meyer, Jeffrey M. Good, et al. 2010. Targeted investigation of the Neandertal Genome by array-based sequence capture. Science 328:723-725.
8. Carroll, Sean B. 2008. Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 134(1):25-36.
9. Green, Richard E., Johannes Krause, AdrianW. Briggs, Tomislav Maricic, Udo Stenzel, Martin Kircher, Nick Patterson, et al. 2010. A draft sequence of the Neandertal genome. Science 328:710-722.
10. Green, Richard E., Johannes Krause, Susan E. Ptak, AdrianW. Briggs, Michael T. Ronan, Jan F. Simons, et al. 2006. Analysis of one million base pairs of Neanderthal DNA. Nature 444:330-336.
11. Hammer, Michael F., August E. Woerner, Fernando L. Mendez, Joseph C. Watkins, and Jeffrey D. Wall. 2011. Genetic evidence for archaic admixture in Africa. Proceedings of the National Academy of Sciences of the USA 108(37): 15123-15128.
12. Hofreiter, Michael, Viviane Jaenicke, David Serre, Arndt von Haeseler, and Svante Pääbo. 2001. DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Research 29:4793-4799.
13. Krause, J., Q. Fu, J. M. Good, B. Viola, M. V. Shunkov, A. P. Derevianko, and S. Pääbo. 2010. The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature 464(7290):894-897.
14. Krings, Matthias, Anne Stone, RalfW. Schmitz, Heike Krainitzki, Mark Stoneking, and Svante Pääbo. 1997. Neandertal DNA sequences and the origin of modern humans. Cell 90:19-30.
15. Lalueza-Fox, Carles, Elena Gigli, Marco de la Rasilla, Javier Fortea, and Antonio Rosas. 2009. Bitter-taste perception in Neandertals through the analysis of TAS2R38 gene. Biology Letters 5:809-811.
16. Lalueza-Fox, Carles, Elena Gigli, Marco de la Rasilla, Javier Fortea, Antonio Rosas, Jaume Bertranpetit, and Johannes Krause. 2008. Neandertal paleogenomics in the ABO blood group gene. BMC Evolutionary Biology 8:342.
17. Lalueza-Fox, Carles, and M. Thomas P. Gilbert. 2011. Paleogenomics of archaic hominins. Current Biology 21(24):R1002-R1009.
18. Lalueza-Fox, Carles, Holger Römpler, David Caramelli, Claudia Stäubert, Giulio Catalano, David Hughes, Nadine Rohland, et al. 2007. A melanocortin 1 receptor allele suggests varying pigmentation among Neanderthals. Science 318:1453-1455.
19. Lalueza-Fox, Carles, Antonio Rosas, Almudena Estalrrich, Elena Gigli, Paula F. Campos, Antonio García-Tabernero, Samuel García-Vargas, et al. 2011. Genetic evidence for patrilocal mating behaviour among Neandertal groups. Proceedings of the National Academy of Sciences of the USA 108(1):250-253.
20. Lopez-Valenzuela, María, Oscar Ramírez, Antonio Rosas, Samuel García-Vargas, Marco de la Rasilla, Carles Lalueza-Fox, and Yolanda Espinosa-Parrilla. 2012. An ancestral allele of miR-1304 present in Neanderthals regulates genes involved in enamel formation and could explain dental differences with modern humans. Molecular Biology and Evolution 29(7):1797-1806.
21. Macchiarelli, Roberto, Luca Bondioli, André Debénath, Arnaud Mazurier, Jean-François Tournepiche, Wendy Birch, and M. Christopher Dean. 2006. How Neanderthal molar teeth grew. Nature 444:748-751.
22. McGary, Kriston L., Tae Joo Park, John O. Woods, Hye Ji Cha, John B. Wallingford, and Edward M. Marcotte. 2010. Systematic discovery of nonobvious human disease models through orthologous phenotypes. Proceedings of the National Academy of Sciences of the USA 107(14):6544-6549.
23. Meyer, Matthias, Martin Kircher, Marie-Theres Gansauge, Heng Li, Fernando Racimo, Swapan Mallick, Joshua G. Schraiber, et al. 2012. A high-coverage genome sequence from an archaic Denisovan individual. Science 338:222-226.
24. Miller, Webb, Stephan C. Schuster, Andreanna J. Welch, Aakrosh Ratan, Oscar C. Bedoya-Reina, Fangqing Zhao, Hie Lim Kim, et al. 2012. Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change. Proceedings of the National Academy of Sciences of the USA 109(36):E2382-E2390.
25. Peresani, Marco, Ivana Fiore, Monica Gala, Matteo Romandini, and Antonio Tagliacozzo. 2011. Late Neandertals and the intentional removal of feathers as evidenced from bird bone taphonomy at Fumane Cave 44 ky B.P., Italy. Proceedings of the National Academy of Sciences of the USA 108(10):3888-3893.
26. Reich, David, Richard E. Green, Martin Kircher, Johannes Krause, Nick Patterson, Eric Y. Durand, Bence Viola, et al. 2010. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature 468(7327): 1053-1060.
27. Reich, David, Nick Patterson, Martin Kircher, Frederick Delfin, Madhusudan R. Nandineni, Irina Pugach, Albert Min-Shan Ko, et al. 2011. Denisova admixture and the first modern human dispersals into southeast Asia and Oceania. American Journal of Human Genetics 89(4):516-528.
28. Sánchez-Quinto, Federico, Laura R. Botigué, Sergi Civit, Conchita Arenas, María Carmen Avila-Arcos, Carlos D. Bustamante, David Comas, and Carles Lalueza-Fox. 2012. North African populations carry the signature of admixture with Neandertals. PLoS ONE 7(10):e47765.
29. Serre, David, André Langaney, Mario Chech, Maria Teschler-Nicola, Maja Paunovic, Philippe Mennecier, Michael Hofreiter, Göran Possnert, and Svante Pääbo. 2004. No evidence of Neandertal mtDNA contribution to early modern humans. PLoS Biology 2(3):1-5.
30. Smith, Tanya M., Paul Tafforeau, Donald J. Reid, Joane Pouech, Vincent Lazzari, John P. Zermeno, Debbie Guatelli-Steinberg, et al. 2010. Dental evidence for ontogenetic differences between modern humans and Neanderthals. Proceedings of the National Academy of Sciences of the USA 107: 20923-20928.
31. Wall, Jeffrey D., and Sung K. Kim. 2007. Inconsistencies in the Neanderthal genomic DNA sequences. PLoS Genetics 3(10):e175.
32. Weaver, Timothy D. 2012. Did a discrete event 200,000-100,000 years ago produce modern humans? Journal of Human Evolution 63:121-126.
33. Zilhão, João, Diego E. Angelucci, Ernestina Badal-García, Francesco d'Errico, Floréal Daniel, Laure Dayet, Katerina Douka, et al. 2010. Symbolic use of marine shells and mineral pigments by Iberian Neandertals. Proceedings of the National Academy of Sciences of the USA 107(3):1023-1028.