-
1
-
-
33645376746
-
The subviral RNA database: A toolbox for viroids, the hepatitis delta virus and satellite RNAs research
-
Rocheleau, L.; Pelchat, M. The subviral RNA database: A toolbox for viroids, the hepatitis delta virus and satellite RNAs research. BMC Microbiol. 2006, 6, 24.
-
(2006)
BMC Microbiol
, vol.6
, pp. 24
-
-
Rocheleau, L.1
Pelchat, M.2
-
2
-
-
33845723170
-
Viroid: A useful model for studying the basic principles of infection and RNA biology
-
Ding, B.; Itaya, A. Viroid: A useful model for studying the basic principles of infection and RNA biology. Mol. Plant Microbe Interact. 2007, 20, 7-20.
-
(2007)
Mol. Plant Microbe Interact
, vol.20
, pp. 7-20
-
-
Ding, B.1
Itaya, A.2
-
3
-
-
70350220614
-
The biology of viroid-host interactions
-
Ding, B. The biology of viroid-host interactions. Annu. Rev. Phytopathol. 2009, 47, 105-131.
-
(2009)
Annu. Rev. Phytopathol
, vol.47
, pp. 105-131
-
-
Ding, B.1
-
4
-
-
0031982168
-
A proposed scheme for viroid classification and nomenclature
-
Flores, R.; Randles, J.W.; Bar-Joseph, M.; Diener, T.O. A proposed scheme for viroid classification and nomenclature. Arch. Virol. 1998, 143, 623-629.
-
(1998)
Arch. Virol
, vol.143
, pp. 623-629
-
-
Flores, R.1
Randles, J.W.2
Bar-Joseph, M.3
Diener, T.O.4
-
5
-
-
54049098797
-
Viroids
-
Tsagris, E.M.; Martinez de Alba, A.E.; Gozmanova, M.; Kalantidis, K. Viroids. Cell. Microbiol. 2008, 10, 2168-2179.
-
(2008)
Cell. Microbiol
, vol.10
, pp. 2168-2179
-
-
Tsagris, E.M.1
Martinez de Alba, A.E.2
Gozmanova, M.3
Kalantidis, K.4
-
6
-
-
0242468044
-
Structural characterization of the 69 nucleotide potato spindle tuber viroid left-terminal domain by NMR and thermodynamic analysis
-
Dingley, A.J.; Steger, G.; Esters, B.; Riesner, D.; Grzesiek, S. Structural characterization of the 69 nucleotide potato spindle tuber viroid left-terminal domain by NMR and thermodynamic analysis. J. Mol. Biol. 2003, 334, 751-767.
-
(2003)
J. Mol. Biol
, vol.334
, pp. 751-767
-
-
Dingley, A.J.1
Steger, G.2
Esters, B.3
Riesner, D.4
Grzesiek, S.5
-
7
-
-
0017821271
-
Nucleotide sequence and secondary structure of potato spindle tuber viroid
-
Gross, H.J.; Domdey, H.; Lossow, C.; Jank, P.; Raba, M.; Alberty, H.; Sanger, H.L. Nucleotide sequence and secondary structure of potato spindle tuber viroid. Nature 1978, 273, 203-208.
-
(1978)
Nature
, vol.273
, pp. 203-208
-
-
Gross, H.J.1
Domdey, H.2
Lossow, C.3
Jank, P.4
Raba, M.5
Alberty, H.6
Sanger, H.L.7
-
8
-
-
34548125369
-
Potato spindle tuber viroid: The simplicity paradox resolved?
-
Owens, R.A. Potato spindle tuber viroid: The simplicity paradox resolved? Mol. Plant Pathol. 2007, 8, 549-560.
-
(2007)
Mol. Plant Pathol
, vol.8
, pp. 549-560
-
-
Owens, R.A.1
-
9
-
-
0017180370
-
Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures
-
Sanger, H.L.; Klotz, G.; Riesner, D.; Gross, H.J.; Kleinschmidt, A.K. Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures. Proc. Natl. Acad. Sci. USA 1976, 73, 3852-3856.
-
(1976)
Proc. Natl. Acad. Sci. USA
, vol.73
, pp. 3852-3856
-
-
Sanger, H.L.1
Klotz, G.2
Riesner, D.3
Gross, H.J.4
Kleinschmidt, A.K.5
-
10
-
-
0034575895
-
Avsunviroidae family: Viroids containing hammerhead ribozymes
-
Flores, R.; Daros, J.A.; Hernandez, C. Avsunviroidae family: Viroids containing hammerhead ribozymes. Adv. Virus Res. 2000, 55, 271-323.
-
(2000)
Adv. Virus Res
, vol.55
, pp. 271-323
-
-
Flores, R.1
Daros, J.A.2
Hernandez, C.3
-
11
-
-
24944468730
-
Viroids and viroid-host interactions
-
Flores, R.; Hernandez, C.; Martinez de Alba, A.E.; Daros, J.A.; Di Serio, F. Viroids and viroid-host interactions. Annu. Rev. Phytopathol. 2005, 43, 117-139.
-
(2005)
Annu. Rev. Phytopathol
, vol.43
, pp. 117-139
-
-
Flores, R.1
Hernandez, C.2
Martinez de Alba, A.E.3
Daros, J.A.4
Di Serio, F.5
-
12
-
-
77149142888
-
The RNA strands of the plus and minus polarities of Peach latent mosaic viroid fold into different structures
-
Dube, A.; Baumstark, T.; Bisaillon, M.; Perreault, J.P. The RNA strands of the plus and minus polarities of Peach latent mosaic viroid fold into different structures. RNA 2010, 16, 463-473.
-
(2010)
RNA
, vol.16
, pp. 463-473
-
-
Dube, A.1
Baumstark, T.2
Bisaillon, M.3
Perreault, J.P.4
-
13
-
-
0242674276
-
Mapping in solution shows the Peach latent mosaic viroid to possess a new pseudoknot in a complex, branched secondary structure
-
Bussiere, F.; Ouellet, J.; Cote, F.; Levesque, D.; Perreault, J.P. Mapping in solution shows the Peach latent mosaic viroid to possess a new pseudoknot in a complex, branched secondary structure. J. Virol. 2000, 74, 2647-2654.
-
(2000)
J. Virol
, vol.74
, pp. 2647-2654
-
-
Bussiere, F.1
Ouellet, J.2
Cote, F.3
Levesque, D.4
Perreault, J.P.5
-
14
-
-
79960439622
-
Mapping studies of the Peach latent mosaic viroid reveal novel structural features
-
Dube, A.; Bolduc, F.; Bisaillon, M.; Perreault, J.P. Mapping studies of the Peach latent mosaic viroid reveal novel structural features. Mol. Plant Pathol. 2011, 12, 688-701.
-
(2011)
Mol. Plant Pathol
, vol.12
, pp. 688-701
-
-
Dube, A.1
Bolduc, F.2
Bisaillon, M.3
Perreault, J.P.4
-
15
-
-
22244451704
-
A kissing-loop interaction in a hammerhead viroid RNA critical for its in vitro folding and in vivo viability
-
Gago, S.; de la Pena, M.; Flores, R. A kissing-loop interaction in a hammerhead viroid RNA critical for its in vitro folding and in vivo viability. RNA 2005, 11, 1073-1083.
-
(2005)
RNA
, vol.11
, pp. 1073-1083
-
-
Gago, S.1
De la Pena, M.2
Flores, R.3
-
16
-
-
0019878340
-
Avocado sunblotch viroid: Primary sequence and proposed secondary structure
-
Symons, R.H. Avocado sunblotch viroid: Primary sequence and proposed secondary structure. Nucleic Acids Res. 1981, 9, 6527-6537.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 6527-6537
-
-
Symons, R.H.1
-
17
-
-
0025765142
-
Alternative hammerhead structures in the self-cleavage of Avocado sunblotch viroid RNAs
-
Davies, C.; Sheldon, C.C.; Symons, R.H. Alternative hammerhead structures in the self-cleavage of Avocado sunblotch viroid RNAs. Nucleic Acids Res. 1991, 19, 1893-1898.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 1893-1898
-
-
Davies, C.1
Sheldon, C.C.2
Symons, R.H.3
-
18
-
-
0028558693
-
Replication of avocado sunblotch viroid: Evidence for a symmetric pathway with two rolling circles and hammerhead ribozyme processing
-
Daros, J.A.; Marcos, J.F.; Hernandez, C.; Flores, R. Replication of avocado sunblotch viroid: Evidence for a symmetric pathway with two rolling circles and hammerhead ribozyme processing. Proc. Natl. Acad. Sci. USA 1994, 91, 12813-12817.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 12813-12817
-
-
Daros, J.A.1
Marcos, J.F.2
Hernandez, C.3
Flores, R.4
-
19
-
-
0000815505
-
Comparison of multimeric plus and minus forms of viroids and virusoids
-
Hutchins, C.J.; Keese, P.; Visvader, J.E.; Rathjen, P.D.; McInnes, J.L.; Symons, R.H. Comparison of multimeric plus and minus forms of viroids and virusoids. Plant Mol. Biol. 1985, 4, 293-304.
-
(1985)
Plant Mol. Biol
, vol.4
, pp. 293-304
-
-
Hutchins, C.J.1
Keese, P.2
Visvader, J.E.3
Rathjen, P.D.4
McInnes, J.L.5
Symons, R.H.6
-
20
-
-
34247162792
-
A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry
-
Mortimer, S.A.; Weeks, K.M. A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry. J. Am. Chem. Soc. 2007, 129, 4144-4145.
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 4144-4145
-
-
Mortimer, S.A.1
Weeks, K.M.2
-
21
-
-
77957139491
-
SHAPE-directed RNA secondary structure prediction
-
Low, J.T.; Weeks, K.M. SHAPE-directed RNA secondary structure prediction. Methods 2010, 52, 150-158.
-
(2010)
Methods
, vol.52
, pp. 150-158
-
-
Low, J.T.1
Weeks, K.M.2
-
22
-
-
80051778062
-
Activity of the human immunodeficiency virus type 1 cell cycle-dependent internal ribosomal entry site is modulated by ires trans-acting factors
-
Vallejos, M.; Deforges, J.; Plank, T.D.; Letelier, A.; Ramdohr, P.; Abraham, C.G.; Valiente-Echeverria, F.; Kieft, J.S.; Sargueil, B.; Lopez-Lastra, M. Activity of the human immunodeficiency virus type 1 cell cycle-dependent internal ribosomal entry site is modulated by ires trans-acting factors. Nucleic Acids Res. 2011, 39, 6186-6200.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6186-6200
-
-
Vallejos, M.1
Deforges, J.2
Plank, T.D.3
Letelier, A.4
Ramdohr, P.5
Abraham, C.G.6
Valiente-Echeverria, F.7
Kieft, J.S.8
Sargueil, B.9
Lopez-Lastra, M.10
-
23
-
-
0142105383
-
Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity
-
De la Pena, M.; Gago, S.; Flores, R. Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity. EMBO J. 2003, 22, 5561-5570.
-
(2003)
EMBO J
, vol.22
, pp. 5561-5570
-
-
De la Pena, M.1
Gago, S.2
Flores, R.3
-
24
-
-
0043009734
-
Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
-
Khvorova, A.; Lescoute, A.; Westhof, E.; Jayasena, S.D. Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity. Nat. Struct. Biol. 2003, 10, 708-712.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 708-712
-
-
Khvorova, A.1
Lescoute, A.2
Westhof, E.3
Jayasena, S.D.4
-
25
-
-
84863205849
-
NIH Image to ImageJ: 25 years of image analysis
-
Schneider, C.A.; Rasband, W.S.; Eliceiri, K.W. NIH Image to ImageJ: 25 years of image analysis. Nat. Methods 2012, 9, 671-675.
-
(2012)
Nat. Methods
, vol.9
, pp. 671-675
-
-
Schneider, C.A.1
Rasband, W.S.2
Eliceiri, K.W.3
-
26
-
-
84893316292
-
Temperature-gradient gel electrophoresis of RNA
-
Wiley-VCH: Weinheim, Germany
-
Riesner, D.; Steger, G. Temperature-gradient gel electrophoresis of RNA. In Handbook of RNA Biochemistry; Wiley-VCH: Weinheim, Germany, 2005.
-
(2005)
Handbook of RNA Biochemistry
-
-
Riesner, D.1
Steger, G.2
-
27
-
-
84859942952
-
The mechanisms of RNA SHAPE chemistry
-
McGinnis, J.L.; Dunkle, J.A.; Cate, J.H.; Weeks, K.M. The mechanisms of RNA SHAPE chemistry. J. Am. Chem. Soc. 2012, 134, 6617-6624.
-
(2012)
J. Am. Chem. Soc
, vol.134
, pp. 6617-6624
-
-
McGinnis, J.L.1
Dunkle, J.A.2
Cate, J.H.3
Weeks, K.M.4
-
28
-
-
84864377848
-
The use of a combination of computer-assisted structure prediction and shape probing to elucidate the secondary structures of five viroids
-
Xu, W.; Bolduc, F.; Hong, N.; Perreault, J.P. The use of a combination of computer-assisted structure prediction and shape probing to elucidate the secondary structures of five viroids. Mol. Plant Pathol. 2012, 13, 666-676.
-
(2012)
Mol. Plant Pathol
, vol.13
, pp. 666-676
-
-
Xu, W.1
Bolduc, F.2
Hong, N.3
Perreault, J.P.4
-
29
-
-
52949152433
-
Shapefinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis
-
Vasa, S.M.; Guex, N.; Wilkinson, K.A.; Weeks, K.M.; Giddings, M.C. Shapefinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis. RNA 2008, 14, 1979-1990.
-
(2008)
RNA
, vol.14
, pp. 1979-1990
-
-
Vasa, S.M.1
Guex, N.2
Wilkinson, K.A.3
Weeks, K.M.4
Giddings, M.C.5
-
30
-
-
77949447172
-
RNAstructure: Software for RNA secondary structure prediction and analysis
-
Reuter, J.S.; Mathews, D.H. RNAstructure: Software for RNA secondary structure prediction and analysis. BMC Bioinformatics 2010, 11, 129.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 129
-
-
Reuter, J.S.1
Mathews, D.H.2
-
31
-
-
67650727366
-
VaRNA: Interactive drawing and editing of the RNA secondary structure
-
Darty, K.; Denise, A.; Ponty, Y. VaRNA: Interactive drawing and editing of the RNA secondary structure. Bioinformatics 2009, 25, 1974-1975.
-
(2009)
Bioinformatics
, vol.25
, pp. 1974-1975
-
-
Darty, K.1
Denise, A.2
Ponty, Y.3
-
32
-
-
0034214286
-
Characterization of the initiation sites of both polarity strands of a viroid RNA reveals a motif conserved in sequence and structure
-
Navarro, J.A.; Flores, R. Characterization of the initiation sites of both polarity strands of a viroid RNA reveals a motif conserved in sequence and structure. EMBO J. 2000, 19, 2662-2670.
-
(2000)
EMBO J
, vol.19
, pp. 2662-2670
-
-
Navarro, J.A.1
Flores, R.2
-
33
-
-
2342572422
-
Arabidopsis thaliana has the enzymatic machinery for replicating representative viroid species of the family pospiviroidae
-
Daros, J.A.; Flores, R. Arabidopsis thaliana has the enzymatic machinery for replicating representative viroid species of the family pospiviroidae. Proc. Natl. Acad. Sci. USA 2004, 101, 6792-6797.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6792-6797
-
-
Daros, J.A.1
Flores, R.2
-
34
-
-
0028945966
-
The RNA of both polarities of the Peach latent mosaic viroid self-cleaves in vitro solely by single hammerhead structures
-
Beaudry, D.; Busiere, F.; Lareau, F.; Lessard, C.; Perreault, J.P. The RNA of both polarities of the Peach latent mosaic viroid self-cleaves in vitro solely by single hammerhead structures. Nucleic Acids Res. 1995, 23, 745-752.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 745-752
-
-
Beaudry, D.1
Busiere, F.2
Lareau, F.3
Lessard, C.4
Perreault, J.P.5
|