-
1
-
-
84872008477
-
Base damage within single-strand DNA underlies in vivo hypermutability induced by a ubiquitous environmental agent
-
K. Chan, J.F. Sterling, S.A. Roberts, A.S. Bhagwat, M.A. Resnick, and D.A. Gordenin Base damage within single-strand DNA underlies in vivo hypermutability induced by a ubiquitous environmental agent PLoS Genet. 8 2012 e1003149
-
(2012)
PLoS Genet.
, vol.8
, pp. 1003149
-
-
Chan, K.1
Sterling, J.F.2
Roberts, S.A.3
Bhagwat, A.S.4
Resnick, M.A.5
Gordenin, D.A.6
-
2
-
-
84861460657
-
Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions
-
S.A. Roberts, J. Sterling, C. Thompson, S. Harris, D. Mav, and R. Shah et al. Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions Mol. Cell 46 2012 424 435
-
(2012)
Mol. Cell
, vol.46
, pp. 424-435
-
-
Roberts, S.A.1
Sterling, J.2
Thompson, C.3
Harris, S.4
Mav, D.5
Shah, R.6
-
3
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
DOI 10.1038/362709a0
-
T. Lindahl Instability and decay of the primary structure of DNA Nature 362 1993 709 715 (Pubitemid 23125973)
-
(1993)
Nature
, vol.362
, Issue.6422
, pp. 709-715
-
-
Lindahl, T.1
-
4
-
-
0036948433
-
Toward maintaining the genome: DNA damage and replication checkpoints
-
DOI 10.1146/annurev.genet.36.060402.113540
-
K.A. Nyberg, R.J. Michelson, C.W. Putnam, and T.A. Weinert Toward maintaining the genome: DNA damage and replication checkpoints Annu. Rev. Genet. 36 2002 617 656 (Pubitemid 36109200)
-
(2002)
Annual Review of Genetics
, vol.36
, pp. 617-656
-
-
Nyberg, K.A.1
Michelson, R.J.2
Putnam, C.W.3
Weinert, T.A.4
-
5
-
-
84984087761
-
Determination of stability of the DNA double helix in an aqueous medium
-
P.L. Privalov, O.B. Ptitsyn, and T.M. Birshtein Determination of stability of the DNA double helix in an aqueous medium Biopolymers 8 1969 559 571
-
(1969)
Biopolymers
, vol.8
, pp. 559-571
-
-
Privalov, P.L.1
Ptitsyn, O.B.2
Birshtein, T.M.3
-
6
-
-
0028138549
-
Theoretical and experimental study of DNA helix-coil transition in acidic and alkaline medium
-
D.Y. Lando, S.G. Haroutiunian, A.M. Kul'ba, E.B. Dalian, P. Orioli, and S. Mangani et al. Theoretical and experimental study of DNA helix-coil transition in acidic and alkaline medium J. Biomol. Struct. Dyn. 12 1994 355 366 (Pubitemid 24373424)
-
(1994)
Journal of Biomolecular Structure and Dynamics
, vol.12
, Issue.2
, pp. 355-366
-
-
Lando, D.Y.1
Haroutiunian, S.G.2
Kul'ba, A.M.3
Dalian, E.B.4
Orioli, P.5
Mangani, S.6
Akhrem, A.A.7
-
7
-
-
84866327731
-
Single-molecule study of the DNA denaturation phase transition in the force-torsion space
-
D. Salerno, A. Tempestini, I. Mai, D. Brogioli, R. Ziano, and V. Cassina et al. Single-molecule study of the DNA denaturation phase transition in the force-torsion space Phys. Rev. Lett. 109 2012 118303
-
(2012)
Phys. Rev. Lett.
, vol.109
, pp. 118303
-
-
Salerno, D.1
Tempestini, A.2
Mai, I.3
Brogioli, D.4
Ziano, R.5
Cassina, V.6
-
8
-
-
84873670792
-
Magnetic tweezers measurements of the nanomechanical stability of DNA against denaturation at various conditions of pH and ionic strength
-
A. Tempestini, V. Cassina, D. Brogioli, R. Ziano, S. Erba, and R. Giovannoni et al. Magnetic tweezers measurements of the nanomechanical stability of DNA against denaturation at various conditions of pH and ionic strength Nucleic Acids Res. 41 2013 2009 2019
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 2009-2019
-
-
Tempestini, A.1
Cassina, V.2
Brogioli, D.3
Ziano, R.4
Erba, S.5
Giovannoni, R.6
-
9
-
-
0344564137
-
DNA supercoiling and temperature adaptation: A clue to early diversification of life?
-
DOI 10.1007/PL00006567
-
P. López-García DNA supercoiling and temperature adaptation: a clue to early diversification of life? J. Mol. Evol. 49 1999 439 452 (Pubitemid 29463387)
-
(1999)
Journal of Molecular Evolution
, vol.49
, Issue.4
, pp. 439-452
-
-
Lopez-Garcia, P.1
-
10
-
-
0028345358
-
Comparison of plasmid DNA topology among mesophilic and thermophilic eubacteria and archaebacteria
-
F. Charbonnier, and P. Forterre Comparison of plasmid DNA topology among mesophilic and thermophilic eubacteria and archaebacteria J. Bacteriol. 176 1994 1251 1259 (Pubitemid 24080037)
-
(1994)
Journal of Bacteriology
, vol.176
, Issue.5
, pp. 1251-1259
-
-
Charbonnier, F.1
Forterre, P.2
-
11
-
-
0026775677
-
Evidence that a plasmid from a hyperthermophilic archaebacterium is relaxed at physiological temperatures
-
F. Charbonnier, G. Erauso, T. Barbeyron, D. Prieur, and P. Forterre Evidence that a plasmid from a hyperthermophilic archaebacterium is relaxed at physiological temperatures J. Bacteriol. 174 1992 6103 6108
-
(1992)
J. Bacteriol.
, vol.174
, pp. 6103-6108
-
-
Charbonnier, F.1
Erauso, G.2
Barbeyron, T.3
Prieur, D.4
Forterre, P.5
-
12
-
-
0030956537
-
DNA topology in hyperthermophilic archaea: Reference states and their variation with growth phase, growth temperature, and temperature stresses
-
DOI 10.1046/j.1365-2958.1997.3051668.x
-
P. Lopez-Garcia, and P. Forterre DNA topology in hyperthermophilic archaea: reference states and their variation with growth phase, growth temperature, and temperature stresses Mol. Microbiol. 23 1997 1267 1279 (Pubitemid 27122211)
-
(1997)
Molecular Microbiology
, vol.23
, Issue.6
, pp. 1267-1279
-
-
Lopez-Garcia, P.1
Forterre, P.2
-
13
-
-
0036111913
-
Magnetic tweezers: Micromanipulation and force measurement at the molecular level
-
C. Gosse, and V. Croquette Magnetic tweezers: micromanipulation and force measurement at the molecular level Biophys. J. 82 2002 3314 3329 (Pubitemid 34547674)
-
(2002)
Biophysical Journal
, vol.82
, Issue.6
, pp. 3314-3329
-
-
Gosse, C.1
Croquette, V.2
-
14
-
-
80054730808
-
Magnetic tweezers for single-molecule manipulation
-
Y. Seol, and K.C. Neuman Magnetic tweezers for single-molecule manipulation Methods Mol. Biol. 783 2011 265 293
-
(2011)
Methods Mol. Biol.
, vol.783
, pp. 265-293
-
-
Seol, Y.1
Neuman, K.C.2
-
15
-
-
84861401482
-
Recent advances in magnetic tweezers
-
I. De Vlaminck, and C. Dekker Recent advances in magnetic tweezers Annu. Rev. Biophys. 41 2012 453 472
-
(2012)
Annu. Rev. Biophys.
, vol.41
, pp. 453-472
-
-
De Vlaminck, I.1
Dekker, C.2
-
16
-
-
0029937922
-
The elasticity of a single supercoiled DNA molecule
-
T.R. Strick, J.F. Allemand, D. Bensimon, A. Bensimon, and V. Croquette The elasticity of a single supercoiled DNA molecule Science 271 1996 1835 1837 (Pubitemid 26112307)
-
(1996)
Science
, vol.271
, Issue.5257
, pp. 1835-1837
-
-
Strick, T.R.1
Allemand, J.-F.2
Bensimon, D.3
Bensimon, A.4
Croquette, V.5
-
17
-
-
0031895463
-
Behavior of supercoiled DNA
-
T.R. Strick, J.F. Allemand, D. Bensimon, and V. Croquette Behavior of supercoiled DNA Biophys. J. 74 1998 2016 2028 (Pubitemid 28157936)
-
(1998)
Biophysical Journal
, vol.74
, Issue.4
, pp. 2016-2028
-
-
Strick, T.R.1
Allemand, J.-F.2
Bensimon, D.3
Croquette, V.4
-
19
-
-
41949110996
-
Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules
-
S. Forth, C. Deufel, M. Sheinin, B. Daniels, J. Sethna, and M. Wang Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules Phys. Rev. Lett. 100 2008 148301
-
(2008)
Phys. Rev. Lett.
, vol.100
, pp. 148301
-
-
Forth, S.1
Deufel, C.2
Sheinin, M.3
Daniels, B.4
Sethna, J.5
Wang, M.6
-
21
-
-
84867314444
-
Topological characterization of the DnaA-oriC complex using single-molecule nanomanipuation
-
S. Zorman, H. Seitz, B. Sclavi, and T.R. Strick Topological characterization of the DnaA-oriC complex using single-molecule nanomanipuation Nucleic Acids Res. 40 2012 7375 7383
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 7375-7383
-
-
Zorman, S.1
Seitz, H.2
Sclavi, B.3
Strick, T.R.4
-
22
-
-
23644449865
-
Single-molecule DNA nanomanipulation: Improved resolution through use of shorter DNA fragments
-
DOI 10.1038/nmeth0205-127
-
A. Revyakin, R.H. Ebright, and T.R. Strick Single-molecule DNA nanomanipulation: improved resolution through use of shorter DNA fragments Nat. Methods 2 2005 127 138 (Pubitemid 41131034)
-
(2005)
Nature Methods
, vol.2
, Issue.2
, pp. 127-138
-
-
Revyakin, A.1
Ebright, R.H.2
Strick, T.R.3
-
23
-
-
0034528817
-
Twisting and stretching single DNA molecules
-
DOI 10.1016/S0079-6107(00)00018-3, PII S0079610700000183
-
T. Strick, J. Allemand, V. Croquette, and D. Bensimon Twisting and stretching single DNA molecules Prog. Biophys. Mol. Biol. 74 2000 115 140 (Pubitemid 32011691)
-
(2000)
Progress in Biophysics and Molecular Biology
, vol.74
, Issue.1-2
, pp. 115-140
-
-
Strick, T.1
Allemand, J.-F.2
Croquette, V.3
Bensimon, D.4
-
24
-
-
84255189907
-
Magnetic trap construction
-
T. Lionnet, J.-F. Allemand, A. Revyakin, T.R. Strick, O.A. Saleh, and D. Bensimon et al. Magnetic trap construction Cold Spring Harb. Protoc. 2012 2012 133 138
-
(2012)
Cold Spring Harb. Protoc.
, vol.2012
, pp. 133-138
-
-
Lionnet, T.1
Allemand, J.-F.2
Revyakin, A.3
Strick, T.R.4
Saleh, O.A.5
Bensimon, D.6
-
25
-
-
68949105584
-
Quantitative modeling and optimization of magnetic tweezers
-
J. Lipfert, X. Hao, and N.H. Dekker Quantitative modeling and optimization of magnetic tweezers Biophys. J. 96 2009 5040 5049
-
(2009)
Biophys. J.
, vol.96
, pp. 5040-5049
-
-
Lipfert, J.1
Hao, X.2
Dekker, N.H.3
-
26
-
-
84861134836
-
Non-bias-limited tracking of spherical particles, enabling nanometer resolution at low magnification
-
M.T.J. van Loenhout, J.W.J. Kerssemakers, I. De Vlaminck, and C. Dekker Non-bias-limited tracking of spherical particles, enabling nanometer resolution at low magnification Biophys. J. 102 2012 2362 2371
-
(2012)
Biophys. J.
, vol.102
, pp. 2362-2371
-
-
Van Loenhout, M.T.J.1
Kerssemakers, J.W.J.2
De Vlaminck, I.3
Dekker, C.4
-
27
-
-
46849090298
-
Temperature dependence of DNA elasticity and cisplatin activity studied with a temperature-controlled magnetic tweezers system
-
J.-S. Park, K.J. Lee, S.-C. Hong, and J.-Y. Hyon Temperature dependence of DNA elasticity and cisplatin activity studied with a temperature-controlled magnetic tweezers system J. Korean Phys. Soc. 52 2008 1927 1931
-
(2008)
J. Korean Phys. Soc.
, vol.52
, pp. 1927-1931
-
-
Park, J.-S.1
Lee, K.J.2
Hong, S.-C.3
Hyon, J.-Y.4
-
28
-
-
23244438737
-
Temperature control methods in a laser tweezers system
-
DOI 10.1529/biophysj.104.054536
-
H. Mao, J.R. Arias-Gonzalez, S.B. Smith, I. Tinoco, and C. Bustamante Temperature control methods in a laser tweezers system Biophys. J. 89 2005 1308 1316 (Pubitemid 41099012)
-
(2005)
Biophysical Journal
, vol.89
, Issue.2
, pp. 1308-1316
-
-
Mao, H.1
Arias-Gonzalez, J.R.2
Smith, S.B.3
Tinoco Jr., I.4
Bustamante, C.5
-
29
-
-
0035072057
-
Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching
-
M.C. Williams, J.R. Wenner, I. Rouzina, and V.A. Bloomfield Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching Biophys. J. 80 2001 1932 1939 (Pubitemid 32281008)
-
(2001)
Biophysical Journal
, vol.80
, Issue.4
, pp. 1932-1939
-
-
Williams, M.C.1
Wenner, J.R.2
Rouzina, I.3
Bloomfield, V.A.4
-
31
-
-
0036953237
-
DNA topology-mediated control of global gene expression in Escherichia coli
-
DOI 10.1146/annurev.genet.36.032902.111815
-
G.W. Hatfield, and C.J. Benham DNA topology-mediated control of global gene expression in Escherichia coli Annu. Rev. Genet. 36 2002 175 203 (Pubitemid 36109188)
-
(2002)
Annual Review of Genetics
, vol.36
, pp. 175-203
-
-
Hatfield, G.W.1
Benham, C.J.2
-
33
-
-
0025608738
-
Reverse gyrase, a hallmark of the hyperthermophilic archaebacteria
-
C. Bouthier de la Tour, C. Portemer, M. Nadal, K.O. Stetter, P. Forterre, and M. Duguet Reverse gyrase, a hallmark of the hyperthermophilic archaebacteria J. Bacteriol. 172 1990 6803 6808
-
(1990)
J. Bacteriol.
, vol.172
, pp. 6803-6808
-
-
Bouthier De La Tour, C.1
Portemer, C.2
Nadal, M.3
Stetter, K.O.4
Forterre, P.5
Duguet, M.6
-
34
-
-
0032582494
-
Force and velocity measured for single molecules of RNA polymerase
-
DOI 10.1126/science.282.5390.902
-
M.D. Wang, M.J. Schnitzer, H. Yin, R. Landick, J. Gelles, and S.M. Block Force and velocity measured for single molecules of RNA polymerase Science 282 1998 902 907 (Pubitemid 28507515)
-
(1998)
Science
, vol.282
, Issue.5390
, pp. 902-907
-
-
Wang, M.D.1
Schnitzer, M.J.2
Yin, H.3
Landick, R.4
Gelles, J.5
Block, S.M.6
-
35
-
-
70349213246
-
Proofreading dynamics of a processive DNA polymerase
-
B. Ibarra, Y.R. Chemla, S. Plyasunov, S.B. Smith, J.M. Lázaro, and M. Salas et al. Proofreading dynamics of a processive DNA polymerase EMBO J. 28 2009 2794 2802
-
(2009)
EMBO J.
, vol.28
, pp. 2794-2802
-
-
Ibarra, B.1
Chemla, Y.R.2
Plyasunov, S.3
Smith, S.B.4
Lázaro, J.M.5
Salas, M.6
-
36
-
-
12844282326
-
Sequence-directed DNA translocation by purified FtsK
-
DOI 10.1126/science.1104885
-
P.J. Pease, O. Levy, G.J. Cost, J. Gore, J.L. Ptacin, and D. Sherratt et al. Sequence-directed DNA translocation by purified FtsK Science 307 2005 586 590 (Pubitemid 40165682)
-
(2005)
Science
, vol.307
, Issue.5709
, pp. 586-590
-
-
Pease, P.J.1
Levy, O.2
Cost, G.J.3
Gore, J.4
Piacin, J.L.5
Sherratt, D.6
Bustamante, C.7
Cozzarelli, N.R.8
-
37
-
-
30144434477
-
Mechanochemical analysis of DNA gyrase using rotor bead tracking
-
DOI 10.1038/nature04319
-
J. Gore, Z. Bryant, M.D. Stone, M. Nöllmann, N.R. Cozzarelli, and C. Bustamante Mechanochemical analysis of DNA gyrase using rotor bead tracking Nature 439 2006 100 104 (Pubitemid 43053636)
-
(2006)
Nature
, vol.439
, Issue.7072
, pp. 100-104
-
-
Gore, J.1
Bryant, Z.2
Stone, M.D.3
Nollmann, M.4
Cozzarelli, N.R.5
Bustamante, C.6
-
38
-
-
34247185768
-
Multiple modes of Escherichia coli DNA gyrase activity revealed by force and torque
-
DOI 10.1038/nsmb1213, PII NSMB1213
-
M. Nöllmann, M.D. Stone, Z. Bryant, J. Gore, N.J. Crisona, and S.-C. Hong et al. Multiple modes of Escherichia coli DNA gyrase activity revealed by force and torque Nat. Struct. Mol. Biol. 14 2007 264 271 (Pubitemid 46608338)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.4
, pp. 264-271
-
-
Nollmann, M.1
Stone, M.D.2
Bryant, Z.3
Gore, J.4
Crisona, N.J.5
Hong, S.-C.6
Mitelheiser, S.7
Maxwell, A.8
Bustamante, C.9
Cozzarelli, N.R.10
|