메뉴 건너뛰기




Volumn 8, Issue 12, 2013, Pages

Impact of pelvic radiotherapy on gut microbiota of gynecological cancer patients revealed by massive pyrosequencing

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84893172969     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0082659     Document Type: Article
Times cited : (169)

References (44)
  • 1
    • 77149142291 scopus 로고    scopus 로고
    • Microbial influences on the small intestinal response to radiation injury
    • doi:10.1097/MOG.0b013e3283361927. PubMed: 20040865
    • Packey CD, Ciorba MA (2010) Microbial influences on the small intestinal response to radiation injury. Curr Opin Gastroenterol 26: 88-94. doi:10.1097/MOG.0b013e3283361927. PubMed: 20040865.
    • (2010) Curr Opin Gastroenterol , vol.26 , pp. 88-94
    • Packey, C.D.1    Ciorba, M.A.2
  • 2
    • 33644872232 scopus 로고    scopus 로고
    • Improving the morbidity of anorectal injury from pelvic radiotherapy
    • DOI 10.1111/j.1463-1318.2005.00851.x
    • Abbasakoor F, Vaizey CJ, Boulos PB (2006) Improving the morbidity of anorectal injury from pelvic radiotherapy. Colorectal Dis 8: 2-10. doi: 10.1111/j.1463-1318.2006.01082-6.x. PubMed: 16519631. (Pubitemid 43372252)
    • (2006) Colorectal Disease , vol.8 , Issue.1 , pp. 2-10
    • Abbasakoor, F.1    Vaizey, C.J.2    Boulos, P.B.3
  • 4
    • 45949090411 scopus 로고    scopus 로고
    • Effects of Probiotic Lactobacillus Casei DN-114 001 in Prevention of Radiation-Induced Diarrhea: Results From Multicenter, Randomized, Placebo-Controlled Nutritional Trial
    • Giralt J, Regadera JP, Verges R, Romero J, de la Fuente I, et al. (2008) Effects of Probiotic Lactobacillus Casei DN-114 001 in Prevention of Radiation-Induced Diarrhea: Results From Multicenter, Randomized, Placebo-Controlled Nutritional Trial. International Journal of Radiation Oncology Biology Physics 71: 1213-1219
    • (2008) International Journal of Radiation Oncology Biology Physics , vol.71 , pp. 1213-1219
    • Giralt, J.1    Regadera, J.P.2    Verges, R.3    Romero, J.4    De La Fuente, I.5
  • 6
    • 0029084615 scopus 로고
    • Abnormal intestinal motor patterns explain enteric colonization with gram-negative bacilli in late radiation enteropathy
    • doi:10.1016/0016-5085(95)90565-0. PubMed: 7557072
    • Husebye E, Skar V, Høverstad T, Iversen T, Melby K (1995) Abnormal intestinal motor patterns explain enteric colonization with gram-negative bacilli in late radiation enteropathy. Gastroenterology 109: 1078-1089. doi:10.1016/0016-5085(95)90565-0. PubMed: 7557072.
    • (1995) Gastroenterology , vol.109 , pp. 1078-1089
    • Husebye, E.1    Skar, V.2    Høverstad, T.3    Iversen, T.4    Melby, K.5
  • 7
    • 9144234364 scopus 로고    scopus 로고
    • Radiation enteropathy and leucocyte-endothelial cell reactions in a refined small bowel model
    • doi: 10.1186/1471-2482-4-10. PubMed: 15363103
    • Johnson LB, Riaz AA, Adawi D, Wittgren L, Bäck S et al. (2004) Radiation enteropathy and leucocyte-endothelial cell reactions in a refined small bowel model. BMC Surg 4: 10. doi: 10.1186/1471-2482-4-10. PubMed: 15363103.
    • (2004) BMC Surg , vol.4 , pp. 10
    • Johnson, L.B.1    Riaz, A.A.2    Adawi, D.3    Wittgren, L.4    Bäck, S.5
  • 9
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700. PubMed: 7683183. (Pubitemid 23072343)
    • (1993) Applied and Environmental Microbiology , vol.59 , Issue.3 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 10
    • 0024507744 scopus 로고
    • Phylogenetic stains: Ribosomal RNA-based probes for the identification of single cells
    • DeLong EF, Wickham GS, Pace NR (1989) Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. Science 243: 1360-1363. doi:10.1126/science.2466341. PubMed: 2466341. (Pubitemid 19085373)
    • (1989) Science , vol.243 , Issue.4896 , pp. 1360-1363
    • DeLong, E.F.1    Wickham, G.S.2    Pace, N.R.3
  • 11
    • 0002861821 scopus 로고
    • Analyzing natural microbial populations by rRNA sequences
    • Pace NR, Stahl DA, Lane DJ, Olsen GJ (1985) Analyzing natural microbial populations by rRNA sequences. ASM News 51: 4-12.
    • (1985) ASM News , vol.51 , pp. 4-12
    • Pace, N.R.1    Stahl, D.A.2    Lane, D.J.3    Olsen, G.J.4
  • 12
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • doi:10.1126/science.1177486. PubMed: 19892944
    • Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI et al. (2009) Bacterial community variation in human body habitats across space and time. Science 326: 1694-1697. doi:10.1126/science.1177486. PubMed: 19892944.
    • (2009) Science , vol.326 , pp. 1694-1697
    • Costello, E.K.1    Lauber, C.L.2    Hamady, M.3    Fierer, N.4    Gordon, J.I.5
  • 13
    • 74949134895 scopus 로고    scopus 로고
    • Defining the healthy "core microbiome" of oral microbial communities
    • doi:10.1186/1471-2180-9-259. PubMed: 20003481
    • Zaura E, Keijser BJ, Huse SM, Crielaard W (2009) Defining the healthy "core microbiome" of oral microbial communities. BMC Microbiol 9: 259. doi:10.1186/1471-2180-9-259. PubMed: 20003481.
    • (2009) BMC Microbiol , vol.9 , pp. 259
    • Zaura, E.1    Keijser, B.J.2    Huse, S.M.3    Crielaard, W.4
  • 14
    • 65549089957 scopus 로고    scopus 로고
    • Pyrosequencing of the chaperonin-60 universal target as a tool for determining microbial community composition
    • doi:10.1128/AEM.01640-08. PubMed: 19270139
    • Schellenberg J, Links MG, Hill JE, Dumonceaux TJ, Peters GA et al. (2009) Pyrosequencing of the chaperonin-60 universal target as a tool for determining microbial community composition. Appl Environ Microbiol 75: 2889-2898. doi:10.1128/AEM.01640-08. PubMed: 19270139.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2889-2898
    • Schellenberg, J.1    Links, M.G.2    Hill, J.E.3    Dumonceaux, T.J.4    Peters, G.A.5
  • 15
    • 79960904343 scopus 로고    scopus 로고
    • Comparative Analysis of Korean Human Gut Microbiota by Barcoded Pyrosequencing
    • doi:10.1371/journal.pone.0022109. PubMed: 21829445
    • Nam Y-D, Jung M-J, Roh SW, Kim M-S, Bae J-W (2011) Comparative Analysis of Korean Human Gut Microbiota by Barcoded Pyrosequencing. PLOS ONE 6: e22109. doi:10.1371/journal.pone.0022109. PubMed: 21829445.
    • (2011) PLOS ONE , vol.6
    • Nam, Y.-D.1    Jung, M.-J.2    Roh, S.W.3    Kim, M.-S.4    Bae, J.-W.5
  • 16
    • 50949131523 scopus 로고    scopus 로고
    • Comparative analysis of human gut microbiota by barcoded pyrosequencing
    • doi:10.1371/journal.pone.0002836. PubMed: 18665274
    • Andersson AF, Lindberg M, Jakobsson H, Bäckhed F, Nyrén P et al. (2008) Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLOS ONE 3: e2836. doi:10.1371/journal.pone.0002836. PubMed: 18665274.
    • (2008) PLOS ONE , vol.3
    • Andersson, A.F.1    Lindberg, M.2    Jakobsson, H.3    Bäckhed, F.4    Nyrén, P.5
  • 17
    • 0242384034 scopus 로고    scopus 로고
    • Review and re-analysis of domain-specific 16S primers
    • DOI 10.1016/j.mimet.2003.08.009
    • Baker GC, Smith JJ, Cowan DA (2003) Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 55: 541-555. doi: 10.1016/j.mimet.2003.08.009. PubMed: 14607398. (Pubitemid 37357207)
    • (2003) Journal of Microbiological Methods , vol.55 , Issue.3 , pp. 541-555
    • Baker, G.C.1    Smith, J.J.2    Cowan, D.A.3
  • 18
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • DOI 10.1038/nmeth.1184, PII NMETH.1184
    • Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5: 235-237. doi:10.1038/nmeth.1184. PubMed: 18264105. (Pubitemid 351325646)
    • (2008) Nature Methods , vol.5 , Issue.3 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 21
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • doi:10.1128/AEM.01541-09. PubMed: 19801464
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M et al. (2009) Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541. doi:10.1128/AEM.01541-09. PubMed: 19801464.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5
  • 22
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
    • doi:10.1093/nar/gkp353. PubMed: 19004872
    • Cole JR, Wang Q, Cardenas E, Fish J, Chai B et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145. doi:10.1093/nar/gkp353. PubMed: 19004872.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5
  • 23
    • 0037057627 scopus 로고    scopus 로고
    • Ecology: Biodiversity in the scales
    • doi:10.1038/419575a. PubMed: 12374963
    • Gotelli NJ (2002) Ecology: Biodiversity in the scales. Nature 419: 575-576. doi:10.1038/419575a. PubMed: 12374963.
    • (2002) Nature , vol.419 , pp. 575-576
    • Gotelli, N.J.1
  • 24
    • 0036712327 scopus 로고    scopus 로고
    • Estimating the number of species in a stochastic abundance model
    • Chao A, Bunge J (2002) Estimating the number of species in a stochastic abundance model. Biometrics 58: 531-539. doi:10.1111/j.0006-341X.2002.00531.x. PubMed: 12229987. (Pubitemid 35001470)
    • (2002) Biometrics , vol.58 , Issue.3 , pp. 531-539
    • Chao, A.1    Bunge, J.2
  • 25
    • 0028782130 scopus 로고
    • Estimating terrestrial biodiversity through extrapolation
    • doi:10.1098/rstb.1994.0091. PubMed: 7972351
    • Colwell RK, Coddington JA (1994) Estimating terrestrial biodiversity through extrapolation. Philos Trans R Soc Lond B Biol Sci 345: 101-118. doi:10.1098/rstb.1994.0091. PubMed: 7972351.
    • (1994) Philos Trans R Soc Lond B Biol Sci , vol.345 , pp. 101-118
    • Colwell, R.K.1    Coddington, J.A.2
  • 27
    • 0036324293 scopus 로고    scopus 로고
    • Phylogenetic approaches for describing and comparing the diversity of microbial communities
    • doi:10.1128/AEM.68.8.3673-3682.2002. PubMed: 12147459
    • Martin AP (2002) Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Environ Microbiol 68: 3673-3682. doi:10.1128/AEM.68.8.3673-3682.2002. PubMed: 12147459.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3673-3682
    • Martin, A.P.1
  • 28
    • 66249145772 scopus 로고    scopus 로고
    • Statistical methods for detecting differentially abundant features in clinical metagenomic samples
    • PubMed: 19360128
    • White JR, Nagarajan N, Pop M (2009) Statistical methods for detecting differentially abundant features in clinical metagenomic samples. PLoS Comput Biol 5: e1000352. PubMed: 19360128.
    • (2009) PLoS Comput Biol , vol.5
    • White, J.R.1    Nagarajan, N.2    Pop, M.3
  • 29
    • 70350666634 scopus 로고    scopus 로고
    • Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43
    • doi:10.1038/nature08530. PubMed: 19865172
    • Maslowski KM, Vieira AT, Ng A, Kranich J, Sierro F et al. (2009) Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43. Nature 461: 1282-1286. doi:10.1038/nature08530. PubMed: 19865172.
    • (2009) Nature , vol.461 , pp. 1282-1286
    • Maslowski, K.M.1    Vieira, A.T.2    Ng, A.3    Kranich, J.4    Sierro, F.5
  • 30
    • 36549075219 scopus 로고    scopus 로고
    • Nutrition and colonic health: The critical role of the microbiota
    • doi:10.1097/MOG. 0b013e3282f323f3. PubMed: 18043233
    • O'Keefe SJD (2008) Nutrition and colonic health: The critical role of the microbiota. Curr Opin Gastroenterol 24: 51-58. doi:10.1097/MOG. 0b013e3282f323f3. PubMed: 18043233.
    • (2008) Curr Opin Gastroenterol , vol.24 , pp. 51-58
    • O'Keefe, S.J.D.1
  • 31
    • 85047691456 scopus 로고    scopus 로고
    • Helicobacter pylori persistence: Biology and disease
    • DOI 10.1172/JCI200420925
    • Blaser MJ, Atherton JC (2004) Helicobacter pylori persistence: Biology and disease. J Clin Invest 113: 321-333. doi:10.1172/JCI20925. PubMed: 14755326. (Pubitemid 38544173)
    • (2004) Journal of Clinical Investigation , vol.113 , Issue.3 , pp. 321-333
    • Blaser, M.J.1    Atherton, J.C.2
  • 32
    • 54549122338 scopus 로고    scopus 로고
    • Innate immunity and intestinal microbiota in the development of Type 1 diabetes
    • doi:10.1038/nature07336. PubMed: 18806780
    • Wen L, Ley RE, Volchkov PY, Stranges PB, Avanesyan L et al. (2008) Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature 455: 1109-1113. doi:10.1038/nature07336. PubMed: 18806780.
    • (2008) Nature , vol.455 , pp. 1109-1113
    • Wen, L.1    Ley, R.E.2    Volchkov, P.Y.3    Stranges, P.B.4    Avanesyan, L.5
  • 33
    • 84897965358 scopus 로고    scopus 로고
    • An increase in the Akkermansia spp. Population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice
    • ([MedlinePgn:]) PubMed: 23804561
    • Shin NR, Lee JC, Lee HY, Kim MS, Whon TW et al. (2013) An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice. Gut: ([MedlinePgn:]) PubMed: 23804561.
    • (2013) Gut
    • Shin, N.R.1    Lee, J.C.2    Lee, H.Y.3    Kim, M.S.4    Whon, T.W.5
  • 34
    • 77955647582 scopus 로고    scopus 로고
    • Gut microbiota in health and disease
    • doi:10.1152/physrev.00045.2009. PubMed: 20664075
    • Sekirov I, Russell SL, Antunes LC, Finlay BB (2010) Gut microbiota in health and disease. Physiol Rev 90: 859-904. doi:10.1152/physrev.00045.2009. PubMed: 20664075.
    • (2010) Physiol Rev , vol.90 , pp. 859-904
    • Sekirov, I.1    Russell, S.L.2    Antunes, L.C.3    Finlay, B.B.4
  • 35
    • 3042712911 scopus 로고    scopus 로고
    • Commensal bacteria, redox stress, and colorectal cancer: Mechanisms and models
    • Huycke MM, Gaskins HR (2004) Commensal bacteria, redox stress, and colorectal cancer: mechanisms and models. Exp Biol Med (Maywood) 229: 586-597. PubMed: 15229352. (Pubitemid 38885671)
    • (2004) Experimental Biology and Medicine , vol.229 , Issue.7 , pp. 586-597
    • Huycke, M.M.1    Gaskin, H.R.2
  • 36
    • 0034074390 scopus 로고    scopus 로고
    • Microbially produced acetaldehyde from ethanol may increase the risk of colon cancer via folate deficiency
    • DOI 10.1002/(SICI)1097-0215(20000415)86:2<169::AID
    • Homann N, Tillonen J, Salaspuro M (2000) Microbially produced acetaldehyde from ethanol may increase the risk of colon cancer via folate deficiency. Int J Cancer 86: 169-173. doi:10.1002/(SICI)1097-0215(20000415)86:2. PubMed: 10738242. (Pubitemid 30180810)
    • (2000) International Journal of Cancer , vol.86 , Issue.2 , pp. 169-173
    • Homann, N.1    Tillonen, J.2    Salaspuro, M.3
  • 37
    • 58149469954 scopus 로고    scopus 로고
    • Association between Fecal Bile Acids and Colorectal Cancer: A Meta-analysis of Observational
    • doi:10.3349/ymj.2008.49.5.792
    • Tong JL, Ran ZH, Shen J, Fan GQ, Xiao SD (2008) Association between Fecal Bile Acids and Colorectal Cancer: A Meta-analysis of Observational. Studies - Yonsei Med J 49: 792-803. doi:10.3349/ymj.2008.49.5.792.
    • (2008) Studies - Yonsei Med J , vol.49 , pp. 792-803
    • Tong, J.L.1    Ran, Z.H.2    Shen, J.3    Fan, G.Q.4    Xiao, S.D.5
  • 38
    • 46049111834 scopus 로고    scopus 로고
    • Maladaptive intestinal epithelial responses to life stress may predispose healthy women to gut mucosal inflammation
    • Alonso C, Guilarte M, Vicario M, Ramos L, Ramadan Z, et al. (2008) Maladaptive intestinal epithelial responses to life stress may predispose healthy women to gut mucosal inflammation. Gastroenterology 135: 163-172 e161
    • (2008) Gastroenterology , vol.135
    • Alonso, C.1    Guilarte, M.2    Vicario, M.3    Ramos, L.4    Ramadan, Z.5
  • 39
    • 34249313567 scopus 로고    scopus 로고
    • Paneth cells, defensins, and the commensal microbiota: A hypothesis on intimate interplay at the intestinal mucosa
    • DOI 10.1016/j.smim.2007.04.002, PII S1044532307000322, The armed truce between the intestinal microflora and host mucosal immunity
    • Salzman NH, Underwood MA, Bevins CL (2007) Paneth cells, defensins, and the commensal microbiota: a hypothesis on intimate interplay at the intestinal mucosa. Semin Immunol 19: 70-83. doi: 10.1016/j.smim.2007.04.002. PubMed: 17485224. (Pubitemid 46824070)
    • (2007) Seminars in Immunology , vol.19 , Issue.2 , pp. 70-83
    • Salzman, N.H.1    Underwood, M.A.2    Bevins, C.L.3
  • 40
    • 50649101119 scopus 로고    scopus 로고
    • The Gut Microbiota Predispose to the Pathophysiology of Acute Postradiotherapy Diarrhea
    • doi: 10.1111/j.1572-0241.2008.01868.x. PubMed: 18564125
    • Manichanh C, Varela E, Martinez C, Antolin M, Llopis M et al. (2008) The Gut Microbiota Predispose to the Pathophysiology of Acute Postradiotherapy Diarrhea. Am J Gastroenterol 103: 1754-1761. doi: 10.1111/j.1572-0241.2008. 01868.x. PubMed: 18564125.
    • (2008) Am J Gastroenterol , vol.103 , pp. 1754-1761
    • Manichanh, C.1    Varela, E.2    Martinez, C.3    Antolin, M.4    Llopis, M.5
  • 41
    • 0036781195 scopus 로고    scopus 로고
    • Radiation enteritis
    • doi:10.1007/s11894-002-0005-3. PubMed: 12228037
    • Bismar MM, Sinicrope FA (2002) Radiation enteritis. Curr Gastroenterol Rep 4: 361-365. doi:10.1007/s11894-002-0005-3. PubMed: 12228037.
    • (2002) Curr Gastroenterol Rep , vol.4 , pp. 361-365
    • Bismar, M.M.1    Sinicrope, F.A.2
  • 42
    • 0036044091 scopus 로고    scopus 로고
    • The biologic role of nuclear factor-[kappa]B in disease and its potential involvement in mucosal injury associated with antineoplastic therapy
    • doi: 10.1177/154411130201300502. PubMed: 12393757
    • Sonis ST (2002) The biologic role of nuclear factor-[kappa]B in disease and its potential involvement in mucosal injury associated with antineoplastic therapy. Crit Rev Oral Biol Med 13: 380-389. doi: 10.1177/154411130201300502. PubMed: 12393757.
    • (2002) Crit Rev Oral Biol Med , vol.13 , pp. 380-389
    • Sonis, S.T.1
  • 43
    • 33846485621 scopus 로고    scopus 로고
    • The relationship between microbiota and polyamine concentration in the human intestine: A pilot study
    • Matsumoto M, Benno Y (2007) The relationship between microbiota and polyamine concentration in the human intestine: a pilot study. Microbiol Immunol 51: 25-35. doi:10.1111/j.1348-0421.2007.tb03887.x. PubMed: 17237596. (Pubitemid 46155183)
    • (2007) Microbiology and Immunology , vol.51 , Issue.1 , pp. 25-35
    • Matsumoto, M.1    Benno, Y.2
  • 44
    • 0347126369 scopus 로고    scopus 로고
    • ComPPARtmentalizing NF-kappaB in the gut
    • doi:10.1038/ni0104-14. PubMed: 14699401
    • Beg AA (2004) ComPPARtmentalizing NF-kappaB in the gut. Nat Immunol 5: 14-16. doi:10.1038/ni0104-14. PubMed: 14699401.
    • (2004) Nat Immunol , vol.5 , pp. 14-16
    • Beg, A.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.