메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines

Author keywords

Cytidine analogues; Cytosine arabinoside; Expression array; Functional genomics; Gemcitabine; Genome wide association study; Genome wide SNPs; Lymphoblastoid cell lines; Translational research

Indexed keywords

CYTARABINE; DEOXYCYTIDINE; GEMCITABINE; GENETIC MARKER; MANNOSYLTRANSFERASE; PIGB PROTEIN, HUMAN; SMALL INTERFERING RNA;

EID: 84893165119     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-93     Document Type: Article
Times cited : (22)

References (39)
  • 2
    • 0026571795 scopus 로고
    • Cellular elimination of 2′,2′-difluorodeoxycytidine 5′-triphosphate: a mechanism of self-potentiation
    • Heinemann V, Xu YZ, Chubb S, Sen A, Hertel LW, Grindey GB, Plunkett W. Cellular elimination of 2′,2′-difluorodeoxycytidine 5′-triphosphate: a mechanism of self-potentiation. Cancer Res 1992, 52:533-539.
    • (1992) Cancer Res , vol.52 , pp. 533-539
    • Heinemann, V.1    Xu, Y.Z.2    Chubb, S.3    Sen, A.4    Hertel, L.W.5    Grindey, G.B.6    Plunkett, W.7
  • 3
    • 0023783698 scopus 로고
    • Comparison of the cellular pharmacokinetics and toxicity of 2′,2′-difluorodeoxycytidine and 1-beta-D-arabinofuranosylcytosine
    • Heinemann V, Hertel LW, Grindey GB, Plunkett W. Comparison of the cellular pharmacokinetics and toxicity of 2′,2′-difluorodeoxycytidine and 1-beta-D-arabinofuranosylcytosine. Cancer Res 1988, 48:4024-4031.
    • (1988) Cancer Res , vol.48 , pp. 4024-4031
    • Heinemann, V.1    Hertel, L.W.2    Grindey, G.B.3    Plunkett, W.4
  • 4
    • 25844483748 scopus 로고    scopus 로고
    • In focus: advanced pancreatic cancer
    • Kindler HL. In focus: advanced pancreatic cancer. Clin Adv Hematol Oncol 2005, 3:420-422.
    • (2005) Clin Adv Hematol Oncol , vol.3 , pp. 420-422
    • Kindler, H.L.1
  • 5
    • 33745294373 scopus 로고    scopus 로고
    • High-dose cytosine arabinoside in the treatment of acute myeloid leukemia: Review of three randomized trials
    • 10.1002/cncr.21543, 16721819
    • Kern W, Estey EH. High-dose cytosine arabinoside in the treatment of acute myeloid leukemia: Review of three randomized trials. Cancer 2006, 107:116-124. 10.1002/cncr.21543, 16721819.
    • (2006) Cancer , vol.107 , pp. 116-124
    • Kern, W.1    Estey, E.H.2
  • 8
    • 55449120805 scopus 로고    scopus 로고
    • Genetic mapping in human disease
    • 10.1126/science.1156409, 2694957, 18988837
    • Altshuler D, Daly MJ, Lander ES. Genetic mapping in human disease. Science 2008, 322:881-888. 10.1126/science.1156409, 2694957, 18988837.
    • (2008) Science , vol.322 , pp. 881-888
    • Altshuler, D.1    Daly, M.J.2    Lander, E.S.3
  • 10
    • 79953174333 scopus 로고    scopus 로고
    • Genomics and drug response
    • 10.1056/NEJMra1010600, 3184612, 21428770
    • Wang L, McLeod HL, Weinshilboum RM. Genomics and drug response. N Engl J Med 2011, 364:1144-1153. 10.1056/NEJMra1010600, 3184612, 21428770.
    • (2011) N Engl J Med , vol.364 , pp. 1144-1153
    • Wang, L.1    McLeod, H.L.2    Weinshilboum, R.M.3
  • 11
    • 58149352685 scopus 로고    scopus 로고
    • Pharmacogenomics: candidate gene identification, functional validation and mechanisms
    • 10.1093/hmg/ddn270, 2574004,2574004, 18852207
    • Wang L, Weinshilboum RM. Pharmacogenomics: candidate gene identification, functional validation and mechanisms. Hum Mol Genet 2008, 17:R174-R179. 10.1093/hmg/ddn270, 2574004,2574004, 18852207.
    • (2008) Hum Mol Genet , vol.17
    • Wang, L.1    Weinshilboum, R.M.2
  • 14
    • 33744486046 scopus 로고    scopus 로고
    • Ribonucleotide reductase M1 (RRM1) 2464GA polymorphism shows an association with gemcitabine chemosensitivity in cancer cell lines
    • 10.1097/01.fpc.0000204999.29924.da, 16708051
    • Kwon WS, Rha SY, Choi YH, Lee JO, Park KH, Jung JJ, Kim TS, Jeung HC, Chung HC. Ribonucleotide reductase M1 (RRM1) 2464GA polymorphism shows an association with gemcitabine chemosensitivity in cancer cell lines. Pharmacogenet Genomics 2006, 16:429-438. 10.1097/01.fpc.0000204999.29924.da, 16708051.
    • (2006) Pharmacogenet Genomics , vol.16 , pp. 429-438
    • Kwon, W.S.1    Rha, S.Y.2    Choi, Y.H.3    Lee, J.O.4    Park, K.H.5    Jung, J.J.6    Kim, T.S.7    Jeung, H.C.8    Chung, H.C.9
  • 17
    • 52049100798 scopus 로고    scopus 로고
    • Gemcitabine and cytosine arabinoside cytotoxicity: association with lymphoblastoid cell expression
    • 10.1158/0008-5472.CAN-08-0405, 2562356, 18757419
    • Li L, Fridley B, Kalari K, Jenkins G, Batzler A, Safgren S, Hildebrandt M, Ames M, Schaid D, Wang L. Gemcitabine and cytosine arabinoside cytotoxicity: association with lymphoblastoid cell expression. Cancer Res 2008, 68:7050-7058. 10.1158/0008-5472.CAN-08-0405, 2562356, 18757419.
    • (2008) Cancer Res , vol.68 , pp. 7050-7058
    • Li, L.1    Fridley, B.2    Kalari, K.3    Jenkins, G.4    Batzler, A.5    Safgren, S.6    Hildebrandt, M.7    Ames, M.8    Schaid, D.9    Wang, L.10
  • 18
    • 70450189297 scopus 로고    scopus 로고
    • Gemcitabine and arabinosylcytosin pharmacogenomics: genome-wide association and drug response biomarkers
    • 10.1371/journal.pone.0007765, 2770319, 19898621
    • Li L, Fridley BL, Kalari K, Jenkins G, Batzler A, Weinshilboum RM, Wang L. Gemcitabine and arabinosylcytosin pharmacogenomics: genome-wide association and drug response biomarkers. PLoS One 2009, 4:e7765. 10.1371/journal.pone.0007765, 2770319, 19898621.
    • (2009) PLoS One , vol.4
    • Li, L.1    Fridley, B.L.2    Kalari, K.3    Jenkins, G.4    Batzler, A.5    Weinshilboum, R.M.6    Wang, L.7
  • 23
    • 78649300012 scopus 로고    scopus 로고
    • Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines
    • 10.1101/gr.107672.110, 2963812, 20923822
    • Niu N, Qin Y, Fridley BL, Hou J, Kalari KR, Zhu M, Wu TY, Jenkins GD, Batzler A, Wang L. Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines. Genome Res 2010, 20:1482-1492. 10.1101/gr.107672.110, 2963812, 20923822.
    • (2010) Genome Res , vol.20 , pp. 1482-1492
    • Niu, N.1    Qin, Y.2    Fridley, B.L.3    Hou, J.4    Kalari, K.R.5    Zhu, M.6    Wu, T.Y.7    Jenkins, G.D.8    Batzler, A.9    Wang, L.10
  • 24
    • 35348817330 scopus 로고    scopus 로고
    • Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
    • 10.1086/521987, 2265661, 17924348
    • Browning SR, Browning BL. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am J Hum Genet 2007, 81:1084-1097. 10.1086/521987, 2265661, 17924348.
    • (2007) Am J Hum Genet , vol.81 , pp. 1084-1097
    • Browning, S.R.1    Browning, B.L.2
  • 25
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1,092 human genomes
    • 10.1038/nature11632, 3498066, 23128226, 1000 Genomes Project Consortium
    • Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA, 1000 Genomes Project Consortium An integrated map of genetic variation from 1,092 human genomes. Nature 2012, 491:56-65. 10.1038/nature11632, 3498066, 23128226, 1000 Genomes Project Consortium.
    • (2012) Nature , vol.491 , pp. 56-65
    • Abecasis, G.R.1    Auton, A.2    Brooks, L.D.3    DePristo, M.A.4    Durbin, R.M.5    Handsaker, R.E.6    Kang, H.M.7    Marth, G.T.8    McVean, G.A.9
  • 26
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • 10.1073/pnas.1530509100, 170937, 12883005
    • Storey JD, Tibshirani R. Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 2003, 100:9440-9445. 10.1073/pnas.1530509100, 170937, 12883005.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 27
    • 69249228672 scopus 로고    scopus 로고
    • FKBP51 affects cancer cell response to chemotherapy by negatively regulating Akt
    • 10.1016/j.ccr.2009.07.016, 2755578, 19732725
    • Pei H, Li L, Fridley BL, Jenkins GD, Kalari KR, Lingle W, Petersen G, Lou Z, Wang L. FKBP51 affects cancer cell response to chemotherapy by negatively regulating Akt. Cancer Cell 2009, 16:259-266. 10.1016/j.ccr.2009.07.016, 2755578, 19732725.
    • (2009) Cancer Cell , vol.16 , pp. 259-266
    • Pei, H.1    Li, L.2    Fridley, B.L.3    Jenkins, G.D.4    Kalari, K.R.5    Lingle, W.6    Petersen, G.7    Lou, Z.8    Wang, L.9
  • 29
    • 0029782178 scopus 로고    scopus 로고
    • PIG-B, a membrane protein of the endoplasmic reticulum with a large lumenal domain, is involved in transferring the third mannose of the GPI anchor
    • 452151, 8861954
    • Takahashi M, Inoue N, Ohishi K, Maeda Y, Nakamura N, Endo Y, Fujita T, Takeda J, Kinoshita T. PIG-B, a membrane protein of the endoplasmic reticulum with a large lumenal domain, is involved in transferring the third mannose of the GPI anchor. EMBO J 1996, 15:4254-4261. 452151, 8861954.
    • (1996) EMBO J , vol.15 , pp. 4254-4261
    • Takahashi, M.1    Inoue, N.2    Ohishi, K.3    Maeda, Y.4    Nakamura, N.5    Endo, Y.6    Fujita, T.7    Takeda, J.8    Kinoshita, T.9
  • 30
    • 0024515848 scopus 로고
    • A novel pathway for glycan assembly: biosynthesis of the glycosyl-phosphatidylinositol anchor of the trypanosome variant surface glycoprotein
    • 10.1016/0092-8674(89)90684-3, 2924349
    • Masterson WJ, Doering TL, Hart GW, Englund PT. A novel pathway for glycan assembly: biosynthesis of the glycosyl-phosphatidylinositol anchor of the trypanosome variant surface glycoprotein. Cell 1989, 56:793-800. 10.1016/0092-8674(89)90684-3, 2924349.
    • (1989) Cell , vol.56 , pp. 793-800
    • Masterson, W.J.1    Doering, T.L.2    Hart, G.W.3    Englund, P.T.4
  • 31
  • 32
    • 0032524569 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae GPI10, the functional homologue of human PIG-B, is required for glycosylphosphatidylinositol-anchor synthesis
    • 1219463, 9576863
    • Sutterlin C, Escribano MV, Gerold P, Maeda Y, Mazon MJ, Kinoshita T, Schwarz RT, Riezman H. Saccharomyces cerevisiae GPI10, the functional homologue of human PIG-B, is required for glycosylphosphatidylinositol-anchor synthesis. Biochem J 1998, 332(Pt 1):153-159. 1219463, 9576863.
    • (1998) Biochem J , vol.332 , Issue.PART 1 , pp. 153-159
    • Sutterlin, C.1    Escribano, M.V.2    Gerold, P.3    Maeda, Y.4    Mazon, M.J.5    Kinoshita, T.6    Schwarz, R.T.7    Riezman, H.8
  • 34
    • 33750574579 scopus 로고    scopus 로고
    • Overexpression of glycosylphosphatidylinositol (GPI) transamidase subunits phosphatidylinositol glycan class T and/or GPI anchor attachment 1 induces tumorigenesis and contributes to invasion in human breast cancer
    • 10.1158/0008-5472.CAN-06-0506, 17047043
    • Wu G, Guo Z, Chatterjee A, Huang X, Rubin E, Wu F, Mambo E, Chang X, Osada M, Sook Kim M, Moon C, Califano JA, Ratovitski EA, Gollin SM, Sukumar S, Sidransky D, Trink B. Overexpression of glycosylphosphatidylinositol (GPI) transamidase subunits phosphatidylinositol glycan class T and/or GPI anchor attachment 1 induces tumorigenesis and contributes to invasion in human breast cancer. Cancer Res 2006, 66:9829-9836. 10.1158/0008-5472.CAN-06-0506, 17047043.
    • (2006) Cancer Res , vol.66 , pp. 9829-9836
    • Wu, G.1    Guo, Z.2    Chatterjee, A.3    Huang, X.4    Rubin, E.5    Wu, F.6    Mambo, E.7    Chang, X.8    Osada, M.9    Sook Kim, M.10    Moon, C.11    Califano, J.A.12    Ratovitski, E.A.13    Gollin, S.M.14    Sukumar, S.15    Sidransky, D.16    Trink, B.17
  • 35
    • 33750618232 scopus 로고    scopus 로고
    • FCGR3A gene polymorphisms may correlate with response to frontline R-CHOP therapy for diffuse large B-cell lymphoma
    • 10.1182/blood-2006-01-009480, 16609067
    • Kim DH, Jung HD, Kim JG, Lee J-J, Yang D-H, Park YH, Do YR, Shin HJ, Kim MK, Hyun MS, Sohn SK. FCGR3A gene polymorphisms may correlate with response to frontline R-CHOP therapy for diffuse large B-cell lymphoma. Blood 2006, 108:2720-2725. 10.1182/blood-2006-01-009480, 16609067.
    • (2006) Blood , vol.108 , pp. 2720-2725
    • Kim, D.H.1    Jung, H.D.2    Kim, J.G.3    Lee, J.J.4    Yang, D.H.5    Park, Y.H.6    Do, Y.R.7    Shin, H.J.8    Kim, M.K.9    Hyun, M.S.10    Sohn, S.K.11
  • 36
    • 77952918274 scopus 로고    scopus 로고
    • Genetic variation in microRNA networks: the implications for cancer research
    • 10.1038/nrc2867, 2950312, 20495573
    • Ryan BM, Robles AI, Harris CC. Genetic variation in microRNA networks: the implications for cancer research. Nat Rev Cancer 2010, 10:389-402. 10.1038/nrc2867, 2950312, 20495573.
    • (2010) Nat Rev Cancer , vol.10 , pp. 389-402
    • Ryan, B.M.1    Robles, A.I.2    Harris, C.C.3
  • 37
    • 79957840356 scopus 로고    scopus 로고
    • Long noncoding RNAs and human disease
    • 10.1016/j.tcb.2011.04.001, 21550244
    • Wapinski O, Chang HY. Long noncoding RNAs and human disease. Trends Cell Biol 2011, 21:354-361. 10.1016/j.tcb.2011.04.001, 21550244.
    • (2011) Trends Cell Biol , vol.21 , pp. 354-361
    • Wapinski, O.1    Chang, H.Y.2
  • 38
    • 0842326026 scopus 로고    scopus 로고
    • Lytic induction therapy for Epstein-Barr virus-positive B-cell lymphomas
    • 10.1128/JVI.78.4.1893-1902.2004, 369434, 14747554
    • Feng WH, Hong G, Delecluse HJ, Kenney SC. Lytic induction therapy for Epstein-Barr virus-positive B-cell lymphomas. J Virol 2004, 78:1893-1902. 10.1128/JVI.78.4.1893-1902.2004, 369434, 14747554.
    • (2004) J Virol , vol.78 , pp. 1893-1902
    • Feng, W.H.1    Hong, G.2    Delecluse, H.J.3    Kenney, S.C.4
  • 39
    • 0037086080 scopus 로고    scopus 로고
    • Chemotherapy induces lytic EBV replication and confers ganciclovir susceptibility to EBV-positive epithelial cell tumors
    • Feng WH, Israel B, Raab-Traub N, Busson P, Kenney SC. Chemotherapy induces lytic EBV replication and confers ganciclovir susceptibility to EBV-positive epithelial cell tumors. Cancer Res 2002, 62:1920-1926.
    • (2002) Cancer Res , vol.62 , pp. 1920-1926
    • Feng, W.H.1    Israel, B.2    Raab-Traub, N.3    Busson, P.4    Kenney, S.C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.