메뉴 건너뛰기




Volumn 52, Issue 2, 2014, Pages 483-488

Development of a loop-mediated isothermal amplification method for detection of Histoplasma capsulatum DNA in clinical samples

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA;

EID: 84893101532     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.02739-13     Document Type: Article
Times cited : (58)

References (39)
  • 1
    • 74549143872 scopus 로고    scopus 로고
    • Validation and clinical application of a molecular method for identification of Histoplasma capsulatum in human specimens in Colombia, South America
    • Munoz C, Gomez BL, Tobon A, Arango K, Restrepo A, Correa MM, Muskus C, Cano LE, Gonzalez A. 2010. Validation and clinical application of a molecular method for identification of Histoplasma capsulatum in human specimens in Colombia, South America. Clin. Vaccine Immunol. 17:62-67. http://dx.doi.org/10. 1128/CVI.00332-09.
    • (2010) Clin. Vaccine Immunol. , vol.17 , pp. 62-67
    • Munoz, C.1    Gomez, B.L.2    Tobon, A.3    Arango, K.4    Restrepo, A.5    Correa, M.M.6    Muskus, C.7    Cano, L.E.8    Gonzalez, A.9
  • 2
    • 33748347475 scopus 로고    scopus 로고
    • American histoplasmosis in developing countries with a special focus on patients with HIV: Diagnosis, treatment, and prognosis
    • Couppie P, Aznar C, Carme B, Nacher M. 2006. American histoplasmosis in developing countries with a special focus on patients with HIV: diagnosis, treatment, and prognosis. Curr. Opin. Infect. Dis. 19:443-449. http://dx.doi.org/10.1097/01.qco.0000244049.15888.b9.
    • (2006) Curr. Opin. Infect. Dis. , vol.19 , pp. 443-449
    • Couppie, P.1    Aznar, C.2    Carme, B.3    Nacher, M.4
  • 3
    • 78649413541 scopus 로고    scopus 로고
    • Clinical and evolutionary characteristics of four patients with pulmonary histoplasmosis reported in the Paraiba Paulista Valley region
    • Zollner MS, Rezende KM, Birman S, Elias CP, Arisawa EA, Santos MA. 2010. Clinical and evolutionary characteristics of four patients with pulmonary histoplasmosis reported in the Paraiba Paulista Valley region. Rev. Soc. Bras. Med. Trop. 43:599-601. http://dx.doi.org/10.1590/S0037-86822010000500028.
    • (2010) Rev. Soc. Bras. Med. Trop. , vol.43 , pp. 599-601
    • Zollner, M.S.1    Rezende, K.M.2    Birman, S.3    Elias, C.P.4    Arisawa, E.A.5    Santos, M.A.6
  • 4
    • 80052212325 scopus 로고    scopus 로고
    • Detection of Blastomyces dermatitidis and Histoplasma capsulatum from culture isolates and clinical specimens by use of real-time PCR
    • Babady NE, Buckwalter SP, Hall L, Le Febre KM, Binnicker MJ, Wengenack NL. 2011. Detection of Blastomyces dermatitidis and Histoplasma capsulatum from culture isolates and clinical specimens by use of real-time PCR. J. Clin. Microbiol. 49:3204-3208. http://dx.doi.org/10.1128/JCM.00673-11.
    • (2011) J. Clin. Microbiol. , vol.49 , pp. 3204-3208
    • Babady, N.E.1    Buckwalter, S.P.2    Hall, L.3    Le Febre, K.M.4    Binnicker, M.J.5    Wengenack, N.L.6
  • 5
    • 77349101312 scopus 로고    scopus 로고
    • Detection of Histoplasma capsulatumDNAin human samples by real-time polymerase chain reaction
    • Simon S, Veron V, Boukhari R, Blanchet D, Aznar C. 2010. Detection of Histoplasma capsulatumDNAin human samples by real-time polymerase chain reaction. Diagn. Microbiol. Infect. Dis. 66:268-273. http://dx.doi.org/10.1016/ j.diagmicrobio.2009.10.010.
    • (2010) Diagn. Microbiol. Infect. Dis. , vol.66 , pp. 268-273
    • Simon, S.1    Veron, V.2    Boukhari, R.3    Blanchet, D.4    Aznar, C.5
  • 9
    • 0027137958 scopus 로고
    • Efficient DNA sequencing on microtiter plates using dried reagents and Bst DNA polymerase
    • Earley JJ, Kuivaniemi H, Prockop DJ, Tromp G. 1993. Efficient DNA sequencing on microtiter plates using dried reagents and Bst DNA polymerase. DNA Seq. 4:79-85.
    • (1993) DNA Seq. , vol.4 , pp. 79-85
    • Earley, J.J.1    Kuivaniemi, H.2    Prockop, D.J.3    Tromp, G.4
  • 10
    • 0033608216 scopus 로고    scopus 로고
    • An homologue of the human 100-kDa protein (p100) is differentially expressed by Histoplasma capsulatum during infection of murine macrophages
    • Porta A, Colonna-Romano S, Callebaut I, Franco A, Marzullo L, Kobayashi GS, Maresca B. 1999. An homologue of the human 100-kDa protein (p100) is differentially expressed by Histoplasma capsulatum during infection of murine macrophages. Biochem. Biophys. Res. Commun. 254:605-613. http://dx.doi.org/10. 1006/bbrc.1998.9894.
    • (1999) Biochem. Biophys. Res. Commun. , vol.254 , pp. 605-613
    • Porta, A.1    Colonna-Romano, S.2    Callebaut, I.3    Franco, A.4    Marzullo, L.5    Kobayashi, G.S.6    Maresca, B.7
  • 12
    • 84879387815 scopus 로고    scopus 로고
    • PRP8 intein in cryptic species of Histoplasma capsulatum: Evolution and phylogeny
    • Theodoro RC, Scheel CM, Brandt ME, Kasuga T, Bagagli E. 2013. PRP8 intein in cryptic species of Histoplasma capsulatum: evolution and phylogeny. Infect. Genet. Evol. 18:174-182. http://dx.doi.org/10.1016/j.meegid.2013.05.001.
    • (2013) Infect. Genet. Evol. , vol.18 , pp. 174-182
    • Theodoro, R.C.1    Scheel, C.M.2    Brandt, M.E.3    Kasuga, T.4    Bagagli, E.5
  • 13
    • 84893152766 scopus 로고    scopus 로고
    • Qiagen, Valencia, CA
    • Qiagen. 2010. QIAmp DNA Micro handbook, 2nd ed, p 31-32. Qiagen, Valencia, CA.
    • (2010) QIAmp DNA Micro Handbook, 2nd Ed , pp. 31-32
  • 14
    • 0036246564 scopus 로고    scopus 로고
    • Evaluation of two nested PCR assays for detection of Histoplasma capsulatum DNA in human tissue
    • Bialek R, Feucht A, Aepinus C, Just-Nubling G, Robertson VJ, Knobloch J, Hohle R. 2002. Evaluation of two nested PCR assays for detection of Histoplasma capsulatum DNA in human tissue. J. Clin. Microbiol. 40: 1644-1647. http://dx.doi.org/10.1128/JCM.40.5.1644-1647.2002.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 1644-1647
    • Bialek, R.1    Feucht, A.2    Aepinus, C.3    Just-Nubling, G.4    Robertson, V.J.5    Knobloch, J.6    Hohle, R.7
  • 15
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797. http://dx.doi.org/10.1093/ nar/gkh340.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 16
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739. http://dx.doi.org/10.1093/molbev/msr121.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 19
    • 43149084823 scopus 로고    scopus 로고
    • Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products
    • Tomita N, Mori Y, Kanda H, Notomi T. 2008. Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat. Protoc. 3:877-882. http://dx.doi.org/10.1038/nprot.2008.57.
    • (2008) Nat. Protoc. , vol.3 , pp. 877-882
    • Tomita, N.1    Mori, Y.2    Kanda, H.3    Notomi, T.4
  • 20
    • 31044436928 scopus 로고    scopus 로고
    • Laboratory medicine in Africa: A barrier to effective health care
    • Petti CA, Polage CR, Quinn TC, Ronald AR, Sande MA. 2006. Laboratory medicine in Africa: a barrier to effective health care. Clin. Infect. Dis. 42:377-382. http://dx.doi.org/10.1086/499363.
    • (2006) Clin. Infect. Dis. , vol.42 , pp. 377-382
    • Petti, C.A.1    Polage, C.R.2    Quinn, T.C.3    Ronald, A.R.4    Sande, M.A.5
  • 22
    • 77950951302 scopus 로고    scopus 로고
    • Clinical and evolutionary characteristics of 134 patients with disseminated histoplasmosis associated with AIDS in the State of Ceara
    • Pontes LB, Leitao Tdo M, Lima GG, Gerhard ES, Fernandes TA. 2010. Clinical and evolutionary characteristics of 134 patients with disseminated histoplasmosis associated with AIDS in the State of Ceara. Rev. Soc. Bras. Med. Trop. 43:27-31. http://dx.doi.org/10.1590/S0037-86822010000100007.
    • (2010) Rev. Soc. Bras. Med. Trop. , vol.43 , pp. 27-31
    • Pontes, L.B.1    Leitao Tdo, M.2    Lima, G.G.3    Gerhard, E.S.4    Fernandes, T.A.5
  • 26
    • 51649094222 scopus 로고    scopus 로고
    • Histoplasmosis in HIV-infected patients in a southern regional medical center: Poor prognosis in the era of highly active antiretroviral therapy
    • Baddley JW, Sankara IR, Rodriquez JM, Pappas PG, Many WJ, Jr. 2008. Histoplasmosis in HIV-infected patients in a southern regional medical center: poor prognosis in the era of highly active antiretroviral therapy. Diagn. Microbiol. Infect. Dis. 62:151-156. http://dx.doi.org/10.1016/j.diagmicrobio. 2008.05.006.
    • (2008) Diagn. Microbiol. Infect. Dis. , vol.62 , pp. 151-156
    • Baddley, J.W.1    Sankara, I.R.2    Rodriquez, J.M.3    Pappas, P.G.4    Many Jr., W.J.5
  • 29
    • 77949363828 scopus 로고    scopus 로고
    • Development and evaluation of loop-mediated isothermal amplification (LAMP) for the rapid diagnosis of Penicillium marneffei in archived tissue samples
    • Sun J, Li X, Zeng H, Xie Z, Lu C, Xi L, de Hoog GS. 2010. Development and evaluation of loop-mediated isothermal amplification (LAMP) for the rapid diagnosis of Penicillium marneffei in archived tissue samples. FEMS Immunol. Med. Microbiol. 58:381-388. http://dx.doi.org/10.1111/j.1574-695X.2010.00647.x.
    • (2010) FEMS Immunol. Med. Microbiol. , vol.58 , pp. 381-388
    • Sun, J.1    Li, X.2    Zeng, H.3    Xie, Z.4    Lu, C.5    Xi, L.6    De Hoog, G.S.7
  • 30
    • 0031891002 scopus 로고    scopus 로고
    • DNA extraction fromhumanurinary sediment
    • Yokota M, Tatsumi N, Tsuda I, Takubo T, Hiyoshi M. 1998. DNA extraction fromhumanurinary sediment. J. Clin. Lab. Anal. 12:88-91. http://dx.doi.org/10. 1002/(SICI)1098-2825(1998)12:2-88::AID-JCLA3 3.0.CO;2-F.
    • (1998) J. Clin. Lab. Anal. , vol.12 , pp. 88-91
    • Yokota, M.1    Tatsumi, N.2    Tsuda, I.3    Takubo, T.4    Hiyoshi, M.5
  • 31
    • 84863692804 scopus 로고    scopus 로고
    • Extracellular superoxide dismutase protects Histoplasma yeast cells from hostderived oxidative stress
    • Youseff BH, Holbrook ED, Smolnycki KA, Rappleye CA. 2012. Extracellular superoxide dismutase protects Histoplasma yeast cells from hostderived oxidative stress. PLoS Pathog. 8:e1002713. http://dx.doi.org/10.1371/journal.ppat. 1002713.
    • (2012) PLoS Pathog. , vol.8
    • Youseff, B.H.1    Holbrook, E.D.2    Smolnycki, K.A.3    Rappleye, C.A.4
  • 33
    • 84862176639 scopus 로고    scopus 로고
    • Diagnostic accuracy and applicability of a PCR system for the detection of Schistosoma mansoni DNA in human urine samples from an endemic area
    • Enk MJ, Oliveira e Silva G, Rodrigues NB. 2012. Diagnostic accuracy and applicability of a PCR system for the detection of Schistosoma mansoni DNA in human urine samples from an endemic area. PLoS One 7:e38947. http://dx.doi.org/10.1371/journal.pone.0038947.
    • (2012) PLoS One , vol.7
    • Enk, M.J.1    Oliveira Silva, E.G.2    Rodrigues, N.B.3
  • 34
    • 33751249302 scopus 로고    scopus 로고
    • PCR detection of Plasmodium falciparum in human urine and saliva samples
    • Mharakurwa S, Simoloka C, Thuma PE, Shiff CJ, Sullivan DJ. 2006. PCR detection of Plasmodium falciparum in human urine and saliva samples. Malar. J. 5:103. http://dx.doi.org/10.1186/1475-2875-5-103.
    • (2006) Malar. J. , vol.5 , pp. 103
    • Mharakurwa, S.1    Simoloka, C.2    Thuma, P.E.3    Shiff, C.J.4    Sullivan, D.J.5
  • 35
    • 19944430102 scopus 로고    scopus 로고
    • PCR-based detection of the Mycobacterium tuberculosis complex in urine of HIV-infected and uninfected pulmonary and extrapulmonary tuberculosis patients in Burkina Faso
    • Torrea G, Van de Perre P, Ouedraogo M, Zougba A, Sawadogo A, Dingtoumda B, Diallo B, Defer MC, Sombie I, Zanetti S, Sechi LA. 2005. PCR-based detection of the Mycobacterium tuberculosis complex in urine of HIV-infected and uninfected pulmonary and extrapulmonary tuberculosis patients in Burkina Faso. J. Med. Microbiol. 54:39-44. http://dx.doi.org/10.1099/jmm.0.45688-0.
    • (2005) J. Med. Microbiol. , vol.54 , pp. 39-44
    • Torrea, G.1    Van De Perre, P.2    Ouedraogo, M.3    Zougba, A.4    Sawadogo, A.5    Dingtoumda, B.6    Diallo, B.7    Defer, M.C.8    Sombie, I.9    Zanetti, S.10    Sechi, L.A.11
  • 36
    • 0041424865 scopus 로고    scopus 로고
    • Isolation and detection of Borrelia burgdorferi DNA from cerebral spinal fluid, synovial fluid, blood, urine, and ticks using the Roche MagNA Pure system and real-time PCR
    • Exner MM, Lewinski MA. 2003. Isolation and detection of Borrelia burgdorferi DNA from cerebral spinal fluid, synovial fluid, blood, urine, and ticks using the Roche MagNA Pure system and real-time PCR. Diagn. Microbiol. Infect. Dis. 46:235-240. http://dx.doi.org/10.1016/S0732-8893(03)00080-4.
    • (2003) Diagn. Microbiol. Infect. Dis. , vol.46 , pp. 235-240
    • Exner, M.M.1    Lewinski, M.A.2
  • 37
    • 33645854343 scopus 로고    scopus 로고
    • Urine polymerase chain reaction is not as sensitive as urine antigen for the diagnosis of disseminated histoplasmosis
    • Tang YW, Li H, Durkin MM, Sefers SE, Meng S, Connolly PA, Stratton CW, Wheat LJ. 2006. Urine polymerase chain reaction is not as sensitive as urine antigen for the diagnosis of disseminated histoplasmosis. Diagn. Microbiol. Infect. Dis. 54:283-287. http://dx.doi.org/10.1016/j.diagmicrobio.2005.10.008.
    • (2006) Diagn. Microbiol. Infect. Dis. , vol.54 , pp. 283-287
    • Tang, Y.W.1    Li, H.2    Durkin, M.M.3    Sefers, S.E.4    Meng, S.5    Connolly, P.A.6    Stratton, C.W.7    Wheat, L.J.8
  • 38
    • 77952907574 scopus 로고    scopus 로고
    • Improving molecular detection of fungal DNA in formalin-fixed paraffin-embedded tissues: Comparison of five tissue DNA extraction methods using panfungal PCR
    • Munoz-Cadavid C, Rudd S, Zaki SR, Patel M, Moser SA, Brandt ME, Gomez BL. 2010. Improving molecular detection of fungal DNA in formalin-fixed paraffin-embedded tissues: comparison of five tissue DNA extraction methods using panfungal PCR. J. Clin. Microbiol. 48:2147-2153. http://dx.doi.org/10. 1128/JCM.00459-10.
    • (2010) J. Clin. Microbiol. , vol.48 , pp. 2147-2153
    • Munoz-Cadavid, C.1    Rudd, S.2    Zaki, S.R.3    Patel, M.4    Moser, S.A.5    Brandt, M.E.6    Gomez, B.L.7
  • 39
    • 84856259511 scopus 로고    scopus 로고
    • DNA extraction from formalin-fixed material
    • Campos PF, Gilbert TM. 2012. DNA extraction from formalin-fixed material. Methods Mol. Biol. 840:81-85. http://dx.doi.org/10.1007/978-1-61779-516-9-11.
    • (2012) Methods Mol. Biol. , vol.840 , pp. 81-85
    • Campos, P.F.1    Gilbert, T.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.