-
1
-
-
77649190197
-
Sexual mating of Botrytis cinerea illustrates PRP8 intein HEG activity
-
Bokor A.A.M., Kan J.A.L.V., Poulter R.T.M. Sexual mating of Botrytis cinerea illustrates PRP8 intein HEG activity. Fungal Genet. Biol. 2010, 47:392-398.
-
(2010)
Fungal Genet. Biol.
, vol.47
, pp. 392-398
-
-
Bokor, A.A.M.1
Kan, J.A.L.V.2
Poulter, R.T.M.3
-
2
-
-
84857992923
-
PRP8 inteins in species of the genus Botrytis and other ascomycetes
-
Bokor A.A.M., Kohn L.M., Poulter R.T.M., Kan J.A.L.V., Burt A. PRP8 inteins in species of the genus Botrytis and other ascomycetes. Fungal Genet. Biol. 2012, 49:250-261.
-
(2012)
Fungal Genet. Biol.
, vol.49
, pp. 250-261
-
-
Bokor, A.A.M.1
Kohn, L.M.2
Poulter, R.T.M.3
Kan, J.A.L.V.4
Burt, A.5
-
3
-
-
8644255915
-
Homing endonuclease genes: the rise and fall and rise again of a selfish element
-
Koufopanou V. Homing endonuclease genes: the rise and fall and rise again of a selfish element. Curr. Opin. Gen. Dev. 2004, 14:609-615.
-
(2004)
Curr. Opin. Gen. Dev.
, vol.14
, pp. 609-615
-
-
Koufopanou, V.1
-
4
-
-
33745979535
-
The distribution and evolutionary history of the PRP8 intein
-
Butler M.I., Gray J., Goodwin T.J., Poulter R.T.M. The distribution and evolutionary history of the PRP8 intein. BMC Evol. Biol. 2006, 6:1-26.
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 1-26
-
-
Butler, M.I.1
Gray, J.2
Goodwin, T.J.3
Poulter, R.T.M.4
-
5
-
-
16244411379
-
The PRP8 inteins in Cryptococcus are a source of phylogenetic and epidemiological information
-
Butler M.I., Poulter R.T. The PRP8 inteins in Cryptococcus are a source of phylogenetic and epidemiological information. Fungal Genet. Biol. 2005, 42:452-463.
-
(2005)
Fungal Genet. Biol.
, vol.42
, pp. 452-463
-
-
Butler, M.I.1
Poulter, R.T.2
-
6
-
-
0029834656
-
Protein splicing involving the Saccharomyces cerevisiae VMA intein. The steps in the splicing pathway, side reactions leading to protein cleavage, and establishment of an in vitro splicing system
-
Chong S., Shao Y., Paulus H., Benner J., Perler F.B., Xu M.Q. Protein splicing involving the Saccharomyces cerevisiae VMA intein. The steps in the splicing pathway, side reactions leading to protein cleavage, and establishment of an in vitro splicing system. J. Biol. Chem. 1996, 271:22159-22168.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 22159-22168
-
-
Chong, S.1
Shao, Y.2
Paulus, H.3
Benner, J.4
Perler, F.B.5
Xu, M.Q.6
-
7
-
-
0344863884
-
A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora
-
Dettman J., Jacobson D., Taylor J.W. A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora. Evolution 2003, 57:2703-2720.
-
(2003)
Evolution
, vol.57
, pp. 2703-2720
-
-
Dettman, J.1
Jacobson, D.2
Taylor, J.W.3
-
8
-
-
0345295170
-
Reproductive isolation and phylogenetic divergence in Neurospora: comparing methods of species recognition in model eukaryote
-
Dettman J., Jacobson D., Turner E., Pringle A., Taylor J.W. Reproductive isolation and phylogenetic divergence in Neurospora: comparing methods of species recognition in model eukaryote. Evolution 2003, 57:2721-2741.
-
(2003)
Evolution
, vol.57
, pp. 2721-2741
-
-
Dettman, J.1
Jacobson, D.2
Turner, E.3
Pringle, A.4
Taylor, J.W.5
-
9
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32(5):1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
10
-
-
0003437302
-
PHYLIP (Phylogeny Inference Package) version 3.69. Distributed by the author. Seattle: Department of Genetics
-
University of Washington. Available from:
-
Felsenstein, J., 1993. PHYLIP (Phylogeny Inference Package) version 3.69. Distributed by the author. Seattle: Department of Genetics, University of Washington. Available from: http://evolution.genetics.washington.edu/phylip.html.
-
(1993)
-
-
Felsenstein, J.1
-
11
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
12
-
-
33751233858
-
Inteins, introns, and homing endonucleases: recent revelations about the life cycle of parasitic genetic elements
-
Gogarten J.P., Hilario E. Inteins, introns, and homing endonucleases: recent revelations about the life cycle of parasitic genetic elements. BMC Evol. Biol. 2006, 6:1-5.
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 1-5
-
-
Gogarten, J.P.1
Hilario, E.2
-
13
-
-
17844395704
-
Prp8 protein: at the heart of the spliceosome
-
Grainger R.J., Beggs J.D. Prp8 protein: at the heart of the spliceosome. RNA 2005, 11:533-557.
-
(2005)
RNA
, vol.11
, pp. 533-557
-
-
Grainger, R.J.1
Beggs, J.D.2
-
14
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59(3):307-321.
-
(2010)
Syst. Biol.
, vol.59
, Issue.3
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
15
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. 1999, 41:95-98.
-
(1999)
Nucleic Acids Symp.
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
16
-
-
0033041535
-
Phylogenetics relationships of variets and geographical groups of the human pathogenic fungus Histoplasma capsulatum darling
-
Kasuga T., Taylor J.W., White T.J. Phylogenetics relationships of variets and geographical groups of the human pathogenic fungus Histoplasma capsulatum darling. J. Clin. Microbiol. 1999, 37:653-663.
-
(1999)
J. Clin. Microbiol.
, vol.37
, pp. 653-663
-
-
Kasuga, T.1
Taylor, J.W.2
White, T.J.3
-
17
-
-
10744233839
-
Phylogeography of the fungal pathogen Histoplasma capsulatum
-
Kasuga T., White T.J., Koenig G., McEwen J., Restrepo A., Castañeda E., Lacaz C.S., Heins-Vaccari E.M., Freitas R.S., Zancopé-Oliveira R.M., Qin Z., Negroni R., Carter D.A., Mikami Y., Tamura M., Taylor M.L., Miller G.F., Poonwan N., Taylor J.W. Phylogeography of the fungal pathogen Histoplasma capsulatum. Mol. Ecol. 2003, 12:3383-3401.
-
(2003)
Mol. Ecol.
, vol.12
, pp. 3383-3401
-
-
Kasuga, T.1
White, T.J.2
Koenig, G.3
McEwen, J.4
Restrepo, A.5
Castañeda, E.6
Lacaz, C.S.7
Heins-Vaccari, E.M.8
Freitas, R.S.9
Zancopé-Oliveira, R.M.10
Qin, Z.11
Negroni, R.12
Carter, D.A.13
Mikami, Y.14
Tamura, M.15
Taylor, M.L.16
Miller, G.F.17
Poonwan, N.18
Taylor, J.W.19
-
18
-
-
0019296687
-
A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
-
Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
19
-
-
20444391629
-
Degeneration and domestication of a selfish gene in yeast: molecular evolution versus site-directed mutagenesis
-
Koufopanou V., Burt A. Degeneration and domestication of a selfish gene in yeast: molecular evolution versus site-directed mutagenesis. Mol. Biol. Evol. 2005, 22:1535-1538.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1535-1538
-
-
Koufopanou, V.1
Burt, A.2
-
21
-
-
0034511180
-
Protein-splicing intein: genetic mobility, origin and evolution
-
Liu X.Q. Protein-splicing intein: genetic mobility, origin and evolution. Annu. Rev. Genet. 2000, 34:61-76.
-
(2000)
Annu. Rev. Genet.
, vol.34
, pp. 61-76
-
-
Liu, X.Q.1
-
22
-
-
4143132304
-
Prp8 intein in fungal pathogens: target for potential antifungal drugs
-
Liu X.Q., Yang J. Prp8 intein in fungal pathogens: target for potential antifungal drugs. FEBS Lett. 2004, 572:46-50.
-
(2004)
FEBS Lett.
, vol.572
, pp. 46-50
-
-
Liu, X.Q.1
Yang, J.2
-
23
-
-
28944448746
-
Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies
-
Matute D.R., McEwen J.G., Montes B.A., San-Blas G., Bagagli E., Rauscher J.T., Restrepo A., Morais F., Nino-Veja G., Taylor J.W. Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol. Biol. Evol. 2006, 23:65-73.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 65-73
-
-
Matute, D.R.1
McEwen, J.G.2
Montes, B.A.3
San-Blas, G.4
Bagagli, E.5
Rauscher, J.T.6
Restrepo, A.7
Morais, F.8
Nino-Veja, G.9
Taylor, J.W.10
-
24
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M., Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 1986, 3:418-426.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
25
-
-
3042840324
-
Inteins as targets for potential antimycobacterial drugs
-
Paulus H. Inteins as targets for potential antimycobacterial drugs. Front. Biosci. 2003, 8:1157-1165.
-
(2003)
Front. Biosci.
, vol.8
, pp. 1157-1165
-
-
Paulus, H.1
-
26
-
-
0033963173
-
InBase, the intein database
-
Perler F.B. InBase, the intein database. Nucleic Acids Res. 2000, 28:344-345.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 344-345
-
-
Perler, F.B.1
-
27
-
-
0032505062
-
Identification of a virus intein and a possible variation in the protein-splicing reaction
-
Pietrokovski S. Identification of a virus intein and a possible variation in the protein-splicing reaction. Curr. Biol. 1998, 8:634-635.
-
(1998)
Curr. Biol.
, vol.8
, pp. 634-635
-
-
Pietrokovski, S.1
-
28
-
-
3242738386
-
Evolution of divergent DNA recognition specificities in VDE homing endonucleases from two yeast species
-
Posey K.L., Koufopanou V., Burt A., Gimble F.S. Evolution of divergent DNA recognition specificities in VDE homing endonucleases from two yeast species. Nucleic Acids Res. 2004, 32:3947-3956.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3947-3956
-
-
Posey, K.L.1
Koufopanou, V.2
Burt, A.3
Gimble, F.S.4
-
30
-
-
53049110115
-
Figtree: Tree figure drawing tool, version 1.3.1. Distributed by the author. Edinburgh, Scotland
-
United Kingdom: Institute of Evolutionary Biology, University of Edinburgh; 2006-2009. Available from:
-
Rambaut, A., 2006. Figtree: Tree figure drawing tool, version 1.3.1. Distributed by the author. Edinburgh, Scotland, United Kingdom: Institute of Evolutionary Biology, University of Edinburgh; 2006-2009. Available from: http://tree.bio.ed.ac.uk/software/figtree/.
-
(2006)
-
-
Rambaut, A.1
-
32
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
33
-
-
0034500354
-
Phylogenetic species recognition and species concepts in fungi
-
Taylor J.W., Jacobson D.J., Kroken S., Kasuga T., Gêiser D.M., Hibbett D.S., Fisher M.C. Phylogenetic species recognition and species concepts in fungi. Fungal Genet. Biol. 2000, 31(1):21-32.
-
(2000)
Fungal Genet. Biol.
, vol.31
, Issue.1
, pp. 21-32
-
-
Taylor, J.W.1
Jacobson, D.J.2
Kroken, S.3
Kasuga, T.4
Gêiser, D.M.5
Hibbett, D.S.6
Fisher, M.C.7
-
34
-
-
65649128923
-
Phylogenetic analysis reveals a high level of speciation in the Paracoccidioides genus
-
Teixeira M.M., Theodoro R.C., de Carvalho M.J., Fernandes L., Paes H.C., Hahn R.C., Mendoza L., Bagagli E., San-Blas G., Felipe M.S. Phylogenetic analysis reveals a high level of speciation in the Paracoccidioides genus. Mol. Phylogenet. Evol. 2009, 52:273-283.
-
(2009)
Mol. Phylogenet. Evol.
, vol.52
, pp. 273-283
-
-
Teixeira, M.M.1
Theodoro, R.C.2
de Carvalho, M.J.3
Fernandes, L.4
Paes, H.C.5
Hahn, R.C.6
Mendoza, L.7
Bagagli, E.8
San-Blas, G.9
Felipe, M.S.10
-
35
-
-
67649512596
-
Inteins in pathogenic fungi: a phylogenetic tool and perspectives for therapeutic applications
-
Theodoro R.C., Bagagli E. Inteins in pathogenic fungi: a phylogenetic tool and perspectives for therapeutic applications. Mem. Inst. Oswaldo Cruz 2009, 104:497-504.
-
(2009)
Mem. Inst. Oswaldo Cruz
, vol.104
, pp. 497-504
-
-
Theodoro, R.C.1
Bagagli, E.2
-
36
-
-
50349094667
-
Phylogenetic analysis of PRP8 intein in Paracoccidioides brasiliensis species complex
-
Theodoro R.C., Bagagli E., Oliveira C. Phylogenetic analysis of PRP8 intein in Paracoccidioides brasiliensis species complex. Fungal Genet. Biol. 2008, 45:1284-1291.
-
(2008)
Fungal Genet. Biol.
, vol.45
, pp. 1284-1291
-
-
Theodoro, R.C.1
Bagagli, E.2
Oliveira, C.3
-
37
-
-
78649960166
-
PRP8 intein in Ajellomycetaceae family pathogens: sequence analysis, splicing evaluation and homing endonuclease activity
-
Theodoro R.C., Volkmann G., Liu X.Q., Bagagli E. PRP8 intein in Ajellomycetaceae family pathogens: sequence analysis, splicing evaluation and homing endonuclease activity. Fungal Genet. Biol. 2011, 48:80-91.
-
(2011)
Fungal Genet. Biol.
, vol.48
, pp. 80-91
-
-
Theodoro, R.C.1
Volkmann, G.2
Liu, X.Q.3
Bagagli, E.4
-
38
-
-
4444240536
-
The Ajellomycetaceae, a new family of vertebrate-associate Onygenales
-
Untereiner W.A., Scott J.A., Naveau F.A., Sigler L., Bachewish J., Angus A. The Ajellomycetaceae, a new family of vertebrate-associate Onygenales. Mycologia 2004, 96:812-821.
-
(2004)
Mycologia
, vol.96
, pp. 812-821
-
-
Untereiner, W.A.1
Scott, J.A.2
Naveau, F.A.3
Sigler, L.4
Bachewish, J.5
Angus, A.6
-
39
-
-
0034848170
-
DAMBE: Data analysis in molecular biology and evolution
-
Xia X., Xie Z. DAMBE: Data analysis in molecular biology and evolution. J. Hered. 2001, 92:371-373.
-
(2001)
J. Hered.
, vol.92
, pp. 371-373
-
-
Xia, X.1
Xie, Z.2
-
40
-
-
0027753790
-
In vitro protein splicing of purified precursor and the identification of a branched intermediate
-
Xu M., Southworth M.W., Mersha F.B., Hornstra L.J., Perler F.B. In vitro protein splicing of purified precursor and the identification of a branched intermediate. Cell 1993, 75:1371-1377.
-
(1993)
Cell
, vol.75
, pp. 1371-1377
-
-
Xu, M.1
Southworth, M.W.2
Mersha, F.B.3
Hornstra, L.J.4
Perler, F.B.5
-
41
-
-
78651401666
-
Cisplatin inhibits protein splicing, suggesting inteins as therapeutic targets in mycobacteria
-
Zhang L., Zheng Y., Callahan B., Belfort M., Liu Y. Cisplatin inhibits protein splicing, suggesting inteins as therapeutic targets in mycobacteria. J. Biol. Chem. 2010, 286(2):1277-1282.
-
(2010)
J. Biol. Chem.
, vol.286
, Issue.2
, pp. 1277-1282
-
-
Zhang, L.1
Zheng, Y.2
Callahan, B.3
Belfort, M.4
Liu, Y.5
|