메뉴 건너뛰기




Volumn 69, Issue 1, 2013, Pages 66-70

Draft genome sequences of five recent human uropathogenic Escherichia coli isolates

Author keywords

Draft genomes; Type III secretion system; Uropathogenic Escherichia coli

Indexed keywords

CIPROFLOXACIN; COTRIMOXAZOLE; OUTER MEMBRANE PROTEIN; BACTERIAL DNA; ESCHERICHIA COLI PROTEIN; VIRULENCE FACTOR;

EID: 84893041671     PISSN: None     EISSN: 2049632X     Source Type: Journal    
DOI: 10.1111/2049-632X.12059     Document Type: Article
Times cited : (15)

References (28)
  • 1
    • 84856088937 scopus 로고    scopus 로고
    • Escherichia coli physiology and metabolism dictates adaptation to diverse host microenvironments
    • Alteri CJ & Mobley HL (2012) Escherichia coli physiology and metabolism dictates adaptation to diverse host microenvironments. Curr Opin Microbiol 15: 3-9.
    • (2012) Curr Opin Microbiol , vol.15 , pp. 3-9
    • Alteri, C.J.1    Mobley, H.L.2
  • 2
    • 79551599525 scopus 로고    scopus 로고
    • Mugsy: fast multiple alignment of closely related whole genomes
    • Angiuoli SV & Salzberg SL (2011) Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27: 334-342.
    • (2011) Bioinformatics , vol.27 , pp. 334-342
    • Angiuoli, S.V.1    Salzberg, S.L.2
  • 3
    • 84860668802 scopus 로고    scopus 로고
    • Lethal inflammasome activation by a multi-drug resistant pathobiont upon antibiotic disruption of the microbiota
    • Ayres JS, Trinidad NJ & Vance RE (2012) Lethal inflammasome activation by a multi-drug resistant pathobiont upon antibiotic disruption of the microbiota. Nat Med 18: 799-806.
    • (2012) Nat Med , vol.18 , pp. 799-806
    • Ayres, J.S.1    Trinidad, N.J.2    Vance, R.E.3
  • 4
    • 40549120596 scopus 로고    scopus 로고
    • The RAST Server: rapid annotations using subsystems technology
    • Aziz RK, Bartels D, Best AA et al. (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9: 75.
    • (2008) BMC Genomics , vol.9 , pp. 75
    • Aziz, R.K.1    Bartels, D.2    Best, A.A.3
  • 5
    • 84864917488 scopus 로고    scopus 로고
    • Preventing urinary tract infection: progress toward an effective Escherichia coli vaccine
    • Brumbaugh AR & Mobley HL (2012) Preventing urinary tract infection: progress toward an effective Escherichia coli vaccine. Expert Rev Vaccines 11: 663-676.
    • (2012) Expert Rev Vaccines , vol.11 , pp. 663-676
    • Brumbaugh, A.R.1    Mobley, H.L.2
  • 6
    • 33748082663 scopus 로고    scopus 로고
    • How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains
    • Brzuszkiewicz E, Bruggemann H, Liesegang H et al. (2006) How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains. P Natl Acad Sci USA 103: 12879-12884.
    • (2006) P Natl Acad Sci USA , vol.103 , pp. 12879-12884
    • Brzuszkiewicz, E.1    Bruggemann, H.2    Liesegang, H.3
  • 7
    • 77649289609 scopus 로고    scopus 로고
    • Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042
    • Chaudhuri RR, Sebaihia M, Hobman JL et al. (2010) Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042. PLoS ONE 5: e8801.
    • (2010) PLoS ONE , vol.5
    • Chaudhuri, R.R.1    Sebaihia, M.2    Hobman, J.L.3
  • 8
    • 79951831698 scopus 로고    scopus 로고
    • International clinical practice guidelines for the treatment of acute uncomplicated cystitis and pyelonephritis in women: a 2010 update by the Infectious Diseases Society of America and the European Society for Microbiology and Infectious Diseases
    • Gupta K, Hooton TM, Naber KG et al. (2011) International clinical practice guidelines for the treatment of acute uncomplicated cystitis and pyelonephritis in women: a 2010 update by the Infectious Diseases Society of America and the European Society for Microbiology and Infectious Diseases. Clin Infect Dis 52: e103-e120.
    • (2011) Clin Infect Dis , vol.52
    • Gupta, K.1    Hooton, T.M.2    Naber, K.G.3
  • 9
    • 79251526849 scopus 로고    scopus 로고
    • Escherichia coli global gene expression in urine from women with urinary tract infection
    • Hagan EC, Lloyd AL, Rasko DA, Faerber GJ & Mobley HL (2010) Escherichia coli global gene expression in urine from women with urinary tract infection. PLoS Pathog 6: e1001187.
    • (2010) PLoS Pathog , vol.6
    • Hagan, E.C.1    Lloyd, A.L.2    Rasko, D.A.3    Faerber, G.J.4    Mobley, H.L.5
  • 10
    • 43149085041 scopus 로고    scopus 로고
    • De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer
    • Hernandez D, Francois P, Farinelli L, Osteras M & Schrenzel J (2008) De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome Res 18: 802-809.
    • (2008) Genome Res , vol.18 , pp. 802-809
    • Hernandez, D.1    Francois, P.2    Farinelli, L.3    Osteras, M.4    Schrenzel, J.5
  • 11
    • 84858227303 scopus 로고    scopus 로고
    • Clinical practice. Uncomplicated urinary tract infection
    • Hooton TM (2012) Clinical practice. Uncomplicated urinary tract infection. N Engl J Med 366: 1028-1037.
    • (2012) N Engl J Med , vol.366 , pp. 1028-1037
    • Hooton, T.M.1
  • 12
    • 28044453495 scopus 로고    scopus 로고
    • A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis
    • Ideses D, Gophna U, Paitan Y, Chaudhuri RR, Pallen MJ & Ron EZ (2005) A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis. J Bacteriol 187: 8164-8171.
    • (2005) J Bacteriol , vol.187 , pp. 8164-8171
    • Ideses, D.1    Gophna, U.2    Paitan, Y.3    Chaudhuri, R.R.4    Pallen, M.J.5    Ron, E.Z.6
  • 13
    • 67049133080 scopus 로고    scopus 로고
    • A module located at a chromosomal integration hot spot is responsible for the multidrug resistance of a reference strain from Escherichia coli clonal group A
    • Lescat M, Calteau A, Hoede C et al. (2009) A module located at a chromosomal integration hot spot is responsible for the multidrug resistance of a reference strain from Escherichia coli clonal group A. Antimicrob Agents Chemother 53: 2283-2288.
    • (2009) Antimicrob Agents Chemother , vol.53 , pp. 2283-2288
    • Lescat, M.1    Calteau, A.2    Hoede, C.3
  • 14
    • 34247601641 scopus 로고    scopus 로고
    • Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli
    • Lloyd AL, Rasko DA & Mobley HL (2007) Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli. J Bacteriol 189: 3532-3546.
    • (2007) J Bacteriol , vol.189 , pp. 3532-3546
    • Lloyd, A.L.1    Rasko, D.A.2    Mobley, H.L.3
  • 15
    • 66149083657 scopus 로고    scopus 로고
    • Genomic islands of uropathogenic Escherichia coli contribute to virulence
    • Lloyd AL, Henderson TA, Vigil PD & Mobley HL (2009) Genomic islands of uropathogenic Escherichia coli contribute to virulence. J Bacteriol 191: 3469-3481.
    • (2009) J Bacteriol , vol.191 , pp. 3469-3481
    • Lloyd, A.L.1    Henderson, T.A.2    Vigil, P.D.3    Mobley, H.L.4
  • 16
    • 0037008115 scopus 로고    scopus 로고
    • Identification of a type III secretion system in uropathogenic Escherichia coli
    • Miyazaki J, Ba-Thein W, Kumao T, Akaza H & Hayashi H (2002) Identification of a type III secretion system in uropathogenic Escherichia coli. FEMS Microbiol Lett 212: 221-228.
    • (2002) FEMS Microbiol Lett , vol.212 , pp. 221-228
    • Miyazaki, J.1    Ba-Thein, W.2    Kumao, T.3    Akaza, H.4    Hayashi, H.5
  • 17
    • 13244252316 scopus 로고    scopus 로고
    • Visualization of comparative genomic analyses by BLAST score ratio
    • Rasko DA, Myers GS & Ravel J (2005) Visualization of comparative genomic analyses by BLAST score ratio. BMC Bioinformatics 6: 2.
    • (2005) BMC Bioinformatics , vol.6 , pp. 2
    • Rasko, D.A.1    Myers, G.S.2    Ravel, J.3
  • 18
    • 2442646490 scopus 로고    scopus 로고
    • The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition
    • Ren CP, Chaudhuri RR, Fivian A, Bailey CM, Antonio M, Barnes WM & Pallen MJ (2004) The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition. J Bacteriol 186: 3547-3560.
    • (2004) J Bacteriol , vol.186 , pp. 3547-3560
    • Ren, C.P.1    Chaudhuri, R.R.2    Fivian, A.3    Bailey, C.M.4    Antonio, M.5    Barnes, W.M.6    Pallen, M.J.7
  • 19
    • 0034041230 scopus 로고    scopus 로고
    • Proposal for a new inclusive designation for extraintestinal pathogenic isolates of Escherichia coli: ExPEC
    • Russo TA & Johnson JR (2000) Proposal for a new inclusive designation for extraintestinal pathogenic isolates of Escherichia coli: ExPEC. J Infect Dis 181: 1753-1754.
    • (2000) J Infect Dis , vol.181 , pp. 1753-1754
    • Russo, T.A.1    Johnson, J.R.2
  • 20
    • 0038076041 scopus 로고    scopus 로고
    • Medical and economic impact of extraintestinal infections due to Escherichia coli: focus on an increasingly important endemic problem
    • Russo TA & Johnson JR (2003) Medical and economic impact of extraintestinal infections due to Escherichia coli: focus on an increasingly important endemic problem. Microbes Infect 5: 449-456.
    • (2003) Microbes Infect , vol.5 , pp. 449-456
    • Russo, T.A.1    Johnson, J.R.2
  • 21
    • 79251525497 scopus 로고    scopus 로고
    • A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation
    • Sahl JW, Steinsland H, Redman JC, Angiuoli SV, Nataro JP, Sommerfelt H & Rasko DA (2011) A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation. Infect Immun 79: 950-960.
    • (2011) Infect Immun , vol.79 , pp. 950-960
    • Sahl, J.W.1    Steinsland, H.2    Redman, J.C.3    Angiuoli, S.V.4    Nataro, J.P.5    Sommerfelt, H.6    Rasko, D.A.7
  • 24
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 25
    • 0029821432 scopus 로고    scopus 로고
    • Hemolytic-uremic syndrome in a six-year-old girl after a urinary tract infection with shiga-toxin-producing Escherichia coli O103:H2
    • Tarr PI, Fouser LS, Stapleton AE, Wilson RA, Kim HH, Vary JC Jr & Clausen CR (1996) Hemolytic-uremic syndrome in a six-year-old girl after a urinary tract infection with shiga-toxin-producing Escherichia coli O103:H2. N Engl J Med 335: 635-638.
    • (1996) N Engl J Med , vol.335 , pp. 635-638
    • Tarr, P.I.1    Fouser, L.S.2    Stapleton, A.E.3    Wilson, R.A.4    Kim, H.H.5    Vary Jr., J.C.6    Clausen, C.R.7
  • 26
    • 0037168538 scopus 로고    scopus 로고
    • Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
    • Welch RA, Burland V, Plunkett G 3rd et al. (2002) Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. P Natl Acad Sci USA 99: 17020-17024.
    • (2002) P Natl Acad Sci USA , vol.99 , pp. 17020-17024
    • Welch, R.A.1    Burland, V.2    Plunkett III, G.3
  • 27
    • 79958804398 scopus 로고    scopus 로고
    • Enteropathogenic and enterohaemorrhagic Escherichia coli: even more subversive elements
    • Wong AR, Pearson JS, Bright MD et al. (2011) Enteropathogenic and enterohaemorrhagic Escherichia coli: even more subversive elements. Mol Microbiol 80: 1420-1438.
    • (2011) Mol Microbiol , vol.80 , pp. 1420-1438
    • Wong, A.R.1    Pearson, J.S.2    Bright, M.D.3
  • 28
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR & Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.