Isolation and characterization of a single-stranded DNA virus infecting the marine diatom chaetoceros sp. Strain SS628-11 isolated from western japan

PLoS ONE

Volumn 8, Issue 12, 2013, Pages

  Kimura, Kei ^a,b   Tomaru, Yuji ^a  

^a FISHERIES RESEARCH AGENCY   (Japan)

^b JAPAN SOCIETY FOR THE PROMOTION OF SCIENCE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

SINGLE STRANDED DNA; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BACILLADNAVIRUS; CHAETOCEROS; CONTROLLED STUDY; DIATOM; DNA VIRUS; HOST RANGE; JAPAN; MOLECULAR PHYLOGENY; MONOPHYLY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; VIRUS CHARACTERIZATION; VIRUS GENOME; VIRUS ISOLATION; VIRUS MORPHOLOGY; VIRUS REPLICATION;

DIATOMS; DNA VIRUSES; DNA, SINGLE-STRANDED; DNA, VIRAL; JAPAN; SEAWATER;

EID: 84892988514     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0082013     Document Type: Article

References (27)

1. Ragueneau O, Schultes S, Bidle K, Claquin P, Moriceau B (2006) Si and C interactions in the world ocean: Importance of ecological processes and implications for the role of diatoms in the biological pump. Global Biogeochem Cy 20: GB4S02.
2. Armbrust EV (2009) The life of diatoms in the world's oceans. Nature 459: 185-192.
3. Booth BC, Laroucheb P, Belangerb S, Kleinc B, Amield D, et al. (2002) Dynamics of Chaetoceros socialis blooms in the North Water. Deep-Sea Res PT II 49: 5003-5025. (Pubitemid 35249655)
4. VanLandingham SL (1968) Catalogue of the Fossil and recent genera and species of diatoms and their synonyms: Part II. Bacteriastrum through Coscinodiscus. J Cramer, Vaduz: 494-1086.
5. Rines JBE, Hargraves PE (1988) The Chaetoceros Ehrenberg (Bacillariophyceae) flora of Narragansett Bay, Rhode Island, USA. Bibliotheca Phycologica 79: 196.
6. Bettarel Y, Kan J, Wang K, Williamson K, Cooney S, et al. (2005) Isolation and preliminary characterisation of a small nuclear inclusion virus infecting the diatom Chaetoceros c.f. gracilis. Aquat Microb Ecol 40: 103-114. (Pubitemid 41414977)
7. Tomaru Y, Fujii N, Oda S, Toyoda K, Nagasaki K (2011) Dynamics of diatom viruses on the western coast of Japan. Aquat Microb Ecol 63: 223-230.
8. Nagasaki K, Tomaru Y, Katanozaka N, Shirai Y, Nishida K, et al. (2004) Isolation and characterization of a novel single-stranded RNA virus infecting the bloom-forming diatom Rhizosolenia setigera. Appl Environ Microb 70: 704-711. (Pubitemid 38568191)
9. Shirai Y, Tomaru Y, Takao Y, Suzuki H, Nagumo T, et al. (2008) Isolation and characterization of a single-stranded RNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier. Appl Environ Microb 74: 4022-4027. (Pubitemid 351962427)
10. Tomaru Y, Takao Y, Suzuki H, Nagumo T, Nagasaki K (2009) Isolation and Characterization of a Single-Stranded RNA Virus Infecting the Bloom-Forming Diatom Chaetoceros socialis. Appl Environ Microb 75: 2375-2381.
11. Tomaru Y, Toyoda K, Kimura K, Hata N, Yoshida M, et al. (2012) First evidence for the existence of pennate diatom viruses. ISME J 6: 1445-1448.
12. Tomaru Y, Toyoda K, Kimura K, Takao Y, Sakurada K, et al. (2013) Isolation and characterization of a single-stranded RNA virus that infects the marine planktonic diatom Chaetoceros sp.(SS08-C03). Phycol Res 61: 27-36.
13. Nagasaki K, Tomaru Y, Takao Y, Nishida K, Shirai Y, et al. (2005) Previously unknown virus infects marine diatom. Appl Environ Microb 71: 3528-3535. (Pubitemid 40980517)
14. Tomaru Y, Shirai Y, Suzuki H, Nagumo T, Nagasaki K (2008) Isolation and characterization of a new single-stranded DNA virus infecting the cosmopolitan marine diatom Chaetoceros dehilis. Aquat Microb Ecol 50: 103-112. (Pubitemid 351300189)
15. Tomaru Y, Shirai Y, Toyoda K, Nagasaki K (2011) Isolation and characterisation of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus. Aquat Microb Ecol 64: 175-184.
16. Tomaru Y, Takao Y, Suzuki H, Nagumo T, Koike K, et al. (2011) Isolation and Characterization of a Single-Stranded DNA Virus Infecting Chaetoceros lorenzianus Grunow. Appl Environ Microb 77: 5285-5293.
17. Toyoda K, Kimura K, Hata N, Nakayama N, Nagasaki K, et al. (2012) Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros sp. (strain TG07-C28). Plankton Benthos Res 7: 20-28.
18. Eissler Y, Wang K, Chen F, Wommack E, Coats W (2009) Ultrastructural characterization of the lytic cycle of an intranuclear virus infecting the diatom Chaetoceros cf. wighamii (bacillariophyceae) from Chesapeake Bay, USA. J Phycol 45: 787-797.
19. Imai I, Itakura S, Matsuyama Y, Yamaguchi M (1996) Selenium requirement for growth of a novel red tide flagellate Chattonella verruculosa (Raphidophyceae) in culture. Fisheries Sci 62: 834-835. (Pubitemid 126417917)
20. Tomaru Y, Tarutani K, Yamaguchi M, Nagasaki K (2004) Quantitative and qualitative impacts of viral infection on Heterosigma akashiwo (Raphidophyceae) population during a bloom in Hiroshima Bay, Japan. Aquat Microb Ecol 34: 227-238. (Pubitemid 39098817)
21. Suttle CA (1993) Enumeration and isolation of viruses. In: Kemp PF, Sherr E, Cole JJ, editors. Handbook of methods in Aquat Microb Ecol. Boca Raton: Lewis Publishers. pp. 121-137.
22. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680. (Pubitemid 24354800)
23. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
24. Takano Y, Horiguchi T (2006) Acquiring scanning electron microscopical, light microscopical and multiple gene sequence data from a single dinoflagellate cell. J phycol 42: 251-256.
25. Nishihara T, Kurano N, Shinoda S (1986) Calculation of most probable number for enumeration of bacteria on microcomputer. Eisei Kagaku 32: 226-228.
26. Aasayama T (1975) Maturation process of the Granulosis virus of the Diamondback Moth, Plutella xylostella. Japanese Society of Applied Entomology and Zoology 19: 149-156.
27. Tomaru Y, Nagasaki K (2011) Diatom viruses. In: Seckbach J, Kociolek J, editors. The diatom world, celluar origin, life in extreme habitats and astrobiology. London: Springer. pp. 211-225.